Rw7G016770

Protein of unknown function (DUF1442)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0013984
Physical Location & Seq
Reverse (-)
17289416 .. 17290538
1123 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G016770.1

Sequence Viewer

Length: 657 bp
ATGAAGCTAATTTGGTCCCCTGAAACAGCCACTAAAGCCTACATCGACACCGTTCGATCTTGCCAAGTTTTTAATGAATCCGGGGTAGCAGAGCTTGTTTCAGCCATGGCAGCAGGCTGGAATGCTAAGTTGATAGTCGAGACATGGTCACAAGGAGGAGCCATTGCCACCAGCATTGGCCTCGAAATCGCCAGCCGGCACACCTGCGGACGGCACGTGTGTGTAGTCGCGGACGAGAACGCAAGGTCAGAGTTCATCACAGCCATGAAAGAAGCAGCAGACATGAACCCAGAAGTGCTTGTAGGTGAGCCAGAGGAGGTCATGTCTGAGCTTGCGGGAATAGATTTCATGGTTGTGGATTGCAAGCGTAAAGACTATGCTAGGGTTCTAAGGCAGGCGAGGTTGAATCAGAGTGGTGCGGTTTTGGTTTGCAAGAATGCCAATTCAAAAAGCGATTCTAGTTTCAGATGGAGGAGTGTCATTGATTCTGGATCAAGAAAGGTGGTTCGGACTGTGTTCTTGCCTGTAGGAAAAGGTTTAGATATGGCTCATGTATCCTGCAGTGGAGGGAATTTGGGGTCAAGCAAGGTAGAGAAGAAGAGATGGATCAAACATTTCGATCAACGATCTGGGGAGGAACATGTTATCAGAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1442

Protein Analysis

218

Amino Acids

23.92

Weight (kDa)

8.74

Isoelectric Point (pI)

49.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1442 PF07279 1 - 218 9.3e-96 Protein of unknown function (DUF1442)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013984)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12320 AT1G62840
fragaria_vesca FvH4_5g00680
prunus_persica Prupe.5G079600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0337631 RchiOBHm_Chr7g0201531
rosa_laevigata RLG00000003664 RLG00000033501
rosa_multiflora Rmu_sc0013887.1_g000001
rosa_roxburghii Rroxscaffold_3G00255240
rosa_rugosa Rorug07G0064700
rosa_samantha Rh6AG501400 Rh7AG191300 Rh7BG193600 Rh7CG202500 Rh7DG196500
rosa_wichuraiana Rw7G016770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 212
Acc36I ACCTGC 1 cut(s) 212
AccII CGCG 1 cut(s) 230
AciI CCGC 4 cut(s) 207, 230, 335, 419
AclWI GGATC 2 cut(s) 499, 614
AcsI RAATTY 1 cut(s) 571
AcvI CACGTG 1 cut(s) 217
AfiI CCNNNNNNNGG 1 cut(s) 210
AflIII ACRYGT 2 cut(s) 216, 640
AgsI TTSAA 2 cut(s) 406, 447
AleI CACNNNNGTG 1 cut(s) 219
AluBI AGCT 3 cut(s) 7, 94, 331
AluI AGCT 3 cut(s) 7, 94, 331
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 2 cut(s) 499, 614
AoxI GGCC 1 cut(s) 178
ApeKI GCWGC 2 cut(s) 110, 275
ApoI RAATTY 1 cut(s) 571
AspS9I GGNCC 1 cut(s) 15
AsuC2I CCSGG 1 cut(s) 82
AsuHPI GGTGA 1 cut(s) 317
AvaII GGWCC 1 cut(s) 15
BbrPI CACGTG 1 cut(s) 217
BbvI GCAGC 2 cut(s) 122, 287
BccI CCATC 2 cut(s) 462, 597
BceAI ACGGC 1 cut(s) 227
BcgI CGANNNNNNTGC 2 cut(s) 163, 197
BciVI GTATCC 1 cut(s) 565
BcnI CCSGG 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 2 cut(s) 381, 459
BfmI CTRYAG 2 cut(s) 525, 559
BfuAI ACCTGC 1 cut(s) 212
BfuI GTATCC 1 cut(s) 565
BisI GCNGC 2 cut(s) 111, 276
BlsI GCNGC 2 cut(s) 112, 277
Bme1390I CCNGG 1 cut(s) 82
Bme18I GGWCC 1 cut(s) 15
BmgT120I GGNCC 1 cut(s) 15
BmiI GGNNCC 2 cut(s) 17, 160
BmrFI CCNGG 1 cut(s) 82
BpuMI CCSGG 1 cut(s) 82
BsaAI YACGTR 1 cut(s) 217
BsaJI CCNNGG 2 cut(s) 81, 105
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse118I RCCGGY 1 cut(s) 195
Bse3DI GCAATG 1 cut(s) 162
BseDI CCNNGG 2 cut(s) 81, 105
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMI GCAATG 1 cut(s) 162
BseMII CTCAG 1 cut(s) 318
BseRI GAGGAG 3 cut(s) 171, 329, 487
BseXI GCAGC 2 cut(s) 122, 287
Bsh1236I CGCG 1 cut(s) 230
BshFI GGCC 1 cut(s) 180
BsiSI CCGG 2 cut(s) 81, 196
BslI CCNNNNNNNGG 1 cut(s) 210
BsmAI GTCTC 1 cut(s) 134
BsmI GAATGC 2 cut(s) 127, 442
BsnI GGCC 1 cut(s) 180
Bsp143I GATC 5 cut(s) 56, 491, 606, 619, 626
Bsp19I CCATGG 1 cut(s) 105
BspACI CCGC 4 cut(s) 207, 230, 335, 419
BspANI GGCC 1 cut(s) 180
BspCNI CTCAG 1 cut(s) 319
BspFNI CGCG 1 cut(s) 230
BspLI GGNNCC 2 cut(s) 17, 160
BspMAI CTGCAG 1 cut(s) 563
BspMI ACCTGC 1 cut(s) 212
BspPI GGATC 2 cut(s) 499, 614
BsrDI GCAATG 1 cut(s) 162
BsrFI RCCGGY 1 cut(s) 195
BssAI RCCGGY 1 cut(s) 195
BssECI CCNNGG 2 cut(s) 81, 105
BssMI GATC 5 cut(s) 56, 491, 606, 619, 626
BssT1I CCWWGG 1 cut(s) 105
Bst4CI ACNGT 2 cut(s) 52, 514
Bst6I CTCTTC 1 cut(s) 593
BstBAI YACGTR 1 cut(s) 217
BstC8I GCNNGC 6 cut(s) 115, 193, 197, 333, 365, 396
BstDEI CTNAG 3 cut(s) 126, 327, 389
BstDSI CCRYGG 1 cut(s) 105
BstFNI CGCG 1 cut(s) 230
BstKTI GATC 5 cut(s) 59, 494, 609, 622, 629
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 5 cut(s) 56, 491, 606, 619, 626
BstMWI GCNNNNNNNGC 2 cut(s) 35, 110
BstNSI RCATGY 1 cut(s) 644
BstSCI CCNGG 1 cut(s) 80
BstSFI CTRYAG 2 cut(s) 525, 559
BstUI CGCG 1 cut(s) 230
BstV1I GCAGC 2 cut(s) 122, 287
BsuI GTATCC 1 cut(s) 565
BsuRI GGCC 1 cut(s) 180
BtgI CCRYGG 1 cut(s) 105
BtsI GCAGTG 1 cut(s) 568
BtsIMutI CAGTG 1 cut(s) 568
BveI ACCTGC 1 cut(s) 212
Cac8I GCNNGC 6 cut(s) 115, 193, 197, 333, 365, 396
Cfr10I RCCGGY 1 cut(s) 195
Cfr13I GGNCC 1 cut(s) 15
CspCI CAANNNNNGTGG 4 cut(s) 157, 192, 483, 518
CviAII CATG 8 cut(s) 106, 144, 265, 283, 322, 349, 551, 641
DdeI CTNAG 3 cut(s) 126, 327, 389
DpnI GATC 5 cut(s) 58, 493, 608, 621, 628
DpnII GATC 5 cut(s) 56, 491, 606, 619, 626
Eam1104I CTCTTC 1 cut(s) 593
EarI CTCTTC 1 cut(s) 593
Eco130I CCWWGG 1 cut(s) 105
Eco47I GGWCC 1 cut(s) 15
Eco72I CACGTG 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 8 cut(s) 109, 147, 268, 286, 325, 352, 554, 644
FatI CATG 8 cut(s) 105, 143, 264, 282, 321, 348, 550, 640
FauI CCCGC 1 cut(s) 328
Fnu4HI GCNGC 2 cut(s) 111, 276
Fsp4HI GCNGC 2 cut(s) 111, 276
FspBI CTAG 2 cut(s) 381, 459
GluI GCNGC 2 cut(s) 111, 276
HaeIII GGCC 1 cut(s) 180
HapII CCGG 2 cut(s) 81, 196
Hin1II CATG 8 cut(s) 109, 147, 268, 286, 325, 352, 554, 644
HinfI GANTC 4 cut(s) 77, 406, 455, 485
HpaII CCGG 2 cut(s) 81, 196
HphI GGTGA 1 cut(s) 317
Hpy188I TCNGA 6 cut(s) 250, 328, 411, 467, 510, 650
Hpy188III TCNNGA 3 cut(s) 139, 489, 495
HpyCH4III ACNGT 2 cut(s) 52, 514
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 3 cut(s) 363, 432, 561
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 110
HpyF3I CTNAG 3 cut(s) 126, 327, 389
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 8 cut(s) 109, 147, 268, 286, 325, 352, 554, 644
KroI GCCGGC 1 cut(s) 195
KroNI GCCGGC 1 cut(s) 197
Kzo9I GATC 5 cut(s) 56, 491, 606, 619, 626
LmnI GCTCC 1 cut(s) 158
Lsp1109I GCAGC 2 cut(s) 122, 287
MaeI CTAG 2 cut(s) 381, 459
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 1 cut(s) 147
MalI GATC 5 cut(s) 58, 493, 608, 621, 628
MboI GATC 5 cut(s) 56, 491, 606, 619, 626
MboII GAAGA 2 cut(s) 607, 610
MluCI AATT 3 cut(s) 9, 442, 571
MnlI CCTC 8 cut(s) 149, 191, 307, 310, 393, 465, 560, 628
MroNI GCCGGC 1 cut(s) 195
MseI TTAA 1 cut(s) 72
MslI CAYNNNNRTG 3 cut(s) 219, 263, 353
MspI CCGG 2 cut(s) 81, 196
MspR9I CCNGG 1 cut(s) 82
Mva1269I GAATGC 2 cut(s) 127, 442
MvnI CGCG 1 cut(s) 230
MwoI GCNNNNNNNGC 2 cut(s) 35, 110
NaeI GCCGGC 1 cut(s) 197
NciI CCSGG 1 cut(s) 82
NcoI CCATGG 1 cut(s) 105
NdeII GATC 5 cut(s) 56, 491, 606, 619, 626
NgoMIV GCCGGC 1 cut(s) 195
NlaIII CATG 8 cut(s) 109, 147, 268, 286, 325, 352, 554, 644
NlaIV GGNNCC 2 cut(s) 17, 160
NmuCI GTSAC 1 cut(s) 147
NspI RCATGY 1 cut(s) 644
OliI CACNNNNGTG 1 cut(s) 219
PaqCI CACCTGC 1 cut(s) 212
PciI ACATGT 1 cut(s) 640
PctI GAATGC 2 cut(s) 127, 442
PdiI GCCGGC 1 cut(s) 197
PfeI GAWTC 4 cut(s) 77, 406, 455, 485
PflFI GACNNNGTC 1 cut(s) 145
PkrI GCNGC 2 cut(s) 112, 277
PmaCI CACGTG 1 cut(s) 217
PmlI CACGTG 1 cut(s) 217
Ppu21I YACGTR 1 cut(s) 217
PscI ACATGT 1 cut(s) 640
PspCI CACGTG 1 cut(s) 217
PspN4I GGNNCC 2 cut(s) 17, 160
PspPI GGNCC 1 cut(s) 15
PstI CTGCAG 1 cut(s) 563
PsyI GACNNNGTC 1 cut(s) 145
RseI CAYNNNNRTG 3 cut(s) 219, 263, 353
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 2 cut(s) 111, 276
Sau3AI GATC 5 cut(s) 56, 491, 606, 619, 626
Sau96I GGNCC 1 cut(s) 15
ScrFI CCNGG 1 cut(s) 82
SfcI CTRYAG 2 cut(s) 525, 559
SinI GGWCC 1 cut(s) 15
SmiMI CAYNNNNRTG 3 cut(s) 219, 263, 353
Sse9I AATT 3 cut(s) 9, 442, 571
SsiI CCGC 4 cut(s) 207, 230, 335, 419
SspMI CTAG 2 cut(s) 381, 459
StyD4I CCNGG 1 cut(s) 80
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 2 cut(s) 52, 514
TaiI ACGT 1 cut(s) 219
TaqI TCGA 5 cut(s) 45, 55, 138, 183, 618
TasI AATT 3 cut(s) 9, 442, 571
TfiI GAWTC 4 cut(s) 77, 406, 455, 485
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TscAI CASTG 1 cut(s) 568
TseFI GTSAC 1 cut(s) 147
TseI GCWGC 2 cut(s) 110, 275
Tsp45I GTSAC 1 cut(s) 147
TspDTI ATGAA 6 cut(s) 17, 90, 244, 281, 299, 337
TspRI CASTG 1 cut(s) 568
Tth111I GACNNNGTC 1 cut(s) 145
VpaK11BI GGWCC 1 cut(s) 15
XapI RAATTY 1 cut(s) 571
XceI RCATGY 1 cut(s) 644
XspI CTAG 2 cut(s) 381, 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.