RLG00000003664

Protein of unknown function (DUF1442)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0013984
Physical Location & Seq
Forward (+)
51443139 .. 51444193
1055 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003664

Sequence Viewer

Length: 552 bp
ATGGCAGCAGGCTGGAATGCTAAGTTGATAGTCGAGACATGGTCACAAGGAGGAGCCATTGCCACCAGTATTGGCCTCGAAATTGCCAGCCGGCACACGTGCGGACGGCACGTGTGTGTAGTCGCGGACGAGAACGCAAGGTCAGAGTTCATCACAGCCATGAAAGAAGCAGCAGACATGAACCCAGAAGTGCTTGTAGGCGAGCCAGAGGAGGTCATGTCTGAGCTTGCGGGAGTAGATTTCATGGTTGTGGATTGCAAGCGTAAGGACTATGCTAGGGTTCTAAGGCAGGCGAGGTTGAATCAGAGTGGTGCGGTTTTGGTTTGCAAGAATGCCAGTTCAAAAAGCGATTCTAGTTTCAGATGGAGGAGTGTTGTTGATTGTGGATCAAGAAAGGTGGTTCGTACTGTGTTCTTGCCTGTAGGGAAAGGTTTAGATATGGCTCATGTATCCTGCAGCGGAGGGAATTCGGGGTCAAGCAAGGTAGACAAGAAGAGATGGATCAAACATTTCGATCAACGATCTGGGGAGGAACATGTTATCAGAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1442

Protein Analysis

184

Amino Acids

20.01

Weight (kDa)

8.96

Isoelectric Point (pI)

47.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1442 PF07279 1 - 183 9.7e-75 Protein of unknown function (DUF1442)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013984)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12320 AT1G62840
fragaria_vesca FvH4_5g00680
prunus_persica Prupe.5G079600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0337631 RchiOBHm_Chr7g0201531
rosa_laevigata RLG00000003664 RLG00000033501
rosa_multiflora Rmu_sc0013887.1_g000001
rosa_roxburghii Rroxscaffold_3G00255240
rosa_rugosa Rorug07G0064700
rosa_samantha Rh6AG501400 Rh7AG191300 Rh7BG193600 Rh7CG202500 Rh7DG196500
rosa_wichuraiana Rw7G016770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 486
AccII CGCG 1 cut(s) 125
AciI CCGC 5 cut(s) 102, 125, 230, 314, 459
AclWI GGATC 2 cut(s) 394, 509
AcsI RAATTY 1 cut(s) 466
AcvI CACGTG 2 cut(s) 99, 112
AfaI GTAC 1 cut(s) 406
AflIII ACRYGT 3 cut(s) 96, 111, 535
AgsI TTSAA 2 cut(s) 301, 342
AleI CACNNNNGTG 1 cut(s) 114
AluBI AGCT 1 cut(s) 226
AluI AGCT 1 cut(s) 226
Alw26I GTCTC 1 cut(s) 29
AlwI GGATC 2 cut(s) 394, 509
AoxI GGCC 1 cut(s) 73
ApeKI GCWGC 3 cut(s) 5, 170, 456
ApoI RAATTY 1 cut(s) 466
BbrPI CACGTG 2 cut(s) 99, 112
BbvI GCAGC 3 cut(s) 17, 182, 468
BccI CCATC 2 cut(s) 357, 492
BceAI ACGGC 1 cut(s) 122
BciVI GTATCC 1 cut(s) 460
BcoDI GTCTC 1 cut(s) 29
BfaI CTAG 2 cut(s) 276, 354
BfmI CTRYAG 2 cut(s) 420, 454
BfuI GTATCC 1 cut(s) 460
BisI GCNGC 3 cut(s) 6, 171, 457
BlsI GCNGC 3 cut(s) 7, 172, 458
BmiI GGNNCC 1 cut(s) 55
BsaAI YACGTR 2 cut(s) 99, 112
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bse118I RCCGGY 1 cut(s) 90
Bse1I ACTGG 2 cut(s) 66, 336
Bse3DI GCAATG 1 cut(s) 57
BseMI GCAATG 1 cut(s) 57
BseMII CTCAG 1 cut(s) 213
BseNI ACTGG 2 cut(s) 66, 336
BseRI GAGGAG 3 cut(s) 66, 224, 382
BseXI GCAGC 3 cut(s) 17, 182, 468
Bsh1236I CGCG 1 cut(s) 125
BshFI GGCC 1 cut(s) 75
BsiSI CCGG 1 cut(s) 91
BsmAI GTCTC 1 cut(s) 29
BsmI GAATGC 2 cut(s) 22, 337
BsnI GGCC 1 cut(s) 75
Bsp143I GATC 4 cut(s) 386, 501, 514, 521
BspACI CCGC 5 cut(s) 102, 125, 230, 314, 459
BspANI GGCC 1 cut(s) 75
BspCNI CTCAG 1 cut(s) 214
BspFNI CGCG 1 cut(s) 125
BspLI GGNNCC 1 cut(s) 55
BspMAI CTGCAG 1 cut(s) 458
BspPI GGATC 2 cut(s) 394, 509
BsrDI GCAATG 1 cut(s) 57
BsrFI RCCGGY 1 cut(s) 90
BsrI ACTGG 2 cut(s) 66, 336
BssAI RCCGGY 1 cut(s) 90
BssMI GATC 4 cut(s) 386, 501, 514, 521
Bst4CI ACNGT 1 cut(s) 409
Bst6I CTCTTC 1 cut(s) 488
BstBAI YACGTR 2 cut(s) 99, 112
BstC8I GCNNGC 7 cut(s) 10, 88, 92, 203, 228, 260, 291
BstDEI CTNAG 3 cut(s) 21, 222, 284
BstFNI CGCG 1 cut(s) 125
BstKTI GATC 4 cut(s) 389, 504, 517, 524
BstMAI GTCTC 1 cut(s) 29
BstMBI GATC 4 cut(s) 386, 501, 514, 521
BstNSI RCATGY 1 cut(s) 539
BstSFI CTRYAG 2 cut(s) 420, 454
BstUI CGCG 1 cut(s) 125
BstV1I GCAGC 3 cut(s) 17, 182, 468
BsuI GTATCC 1 cut(s) 460
BsuRI GGCC 1 cut(s) 75
Cac8I GCNNGC 7 cut(s) 10, 88, 92, 203, 228, 260, 291
Cfr10I RCCGGY 1 cut(s) 90
Csp6I GTAC 1 cut(s) 405
CspCI CAANNNNNGTGG 4 cut(s) 52, 87, 378, 413
CviAII CATG 7 cut(s) 39, 160, 178, 217, 244, 446, 536
CviJI RGCY 8 cut(s) 12, 56, 75, 90, 158, 205, 226, 443
CviKI_1 RGCY 8 cut(s) 12, 56, 75, 90, 158, 205, 226, 443
CviQI GTAC 1 cut(s) 405
DdeI CTNAG 3 cut(s) 21, 222, 284
DpnI GATC 4 cut(s) 388, 503, 516, 523
DpnII GATC 4 cut(s) 386, 501, 514, 521
Eam1104I CTCTTC 1 cut(s) 488
EarI CTCTTC 1 cut(s) 488
Eco72I CACGTG 2 cut(s) 99, 112
EcoRI GAATTC 1 cut(s) 466
FaeI CATG 7 cut(s) 42, 163, 181, 220, 247, 449, 539
FaiI YATR 9 cut(s) 40, 161, 179, 218, 245, 273, 440, 447, 537
FatI CATG 7 cut(s) 38, 159, 177, 216, 243, 445, 535
FauI CCCGC 1 cut(s) 223
FblI GTMKAC 1 cut(s) 486
Fnu4HI GCNGC 3 cut(s) 6, 171, 457
Fsp4HI GCNGC 3 cut(s) 6, 171, 457
FspBI CTAG 2 cut(s) 276, 354
GluI GCNGC 3 cut(s) 6, 171, 457
HaeIII GGCC 1 cut(s) 75
HapII CCGG 1 cut(s) 91
Hin1II CATG 7 cut(s) 42, 163, 181, 220, 247, 449, 539
HinfI GANTC 2 cut(s) 301, 350
HpaII CCGG 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 487
Hpy188I TCNGA 5 cut(s) 145, 223, 306, 362, 545
Hpy188III TCNNGA 2 cut(s) 34, 390
Hpy8I GTNNAC 1 cut(s) 487
HpyCH4III ACNGT 1 cut(s) 409
HpyCH4IV ACGT 2 cut(s) 98, 111
HpyCH4V TGCA 3 cut(s) 258, 327, 456
HpyF3I CTNAG 3 cut(s) 21, 222, 284
HpySE526I ACGT 2 cut(s) 98, 111
Hsp92II CATG 7 cut(s) 42, 163, 181, 220, 247, 449, 539
KroI GCCGGC 1 cut(s) 90
KroNI GCCGGC 1 cut(s) 92
Kzo9I GATC 4 cut(s) 386, 501, 514, 521
LmnI GCTCC 1 cut(s) 53
Lsp1109I GCAGC 3 cut(s) 17, 182, 468
MaeI CTAG 2 cut(s) 276, 354
MaeII ACGT 2 cut(s) 98, 111
MaeIII GTNAC 1 cut(s) 42
MalI GATC 4 cut(s) 388, 503, 516, 523
MboI GATC 4 cut(s) 386, 501, 514, 521
MboII GAAGA 1 cut(s) 505
MluCI AATT 2 cut(s) 81, 466
MnlI CCTC 8 cut(s) 44, 86, 202, 205, 288, 360, 455, 523
MroNI GCCGGC 1 cut(s) 90
MslI CAYNNNNRTG 3 cut(s) 114, 158, 248
MspA1I CMGCKG 1 cut(s) 459
MspI CCGG 1 cut(s) 91
Mva1269I GAATGC 2 cut(s) 22, 337
MvnI CGCG 1 cut(s) 125
NaeI GCCGGC 1 cut(s) 92
NdeII GATC 4 cut(s) 386, 501, 514, 521
NgoMIV GCCGGC 1 cut(s) 90
NlaIII CATG 7 cut(s) 42, 163, 181, 220, 247, 449, 539
NlaIV GGNNCC 1 cut(s) 55
NmuCI GTSAC 1 cut(s) 42
NspI RCATGY 1 cut(s) 539
OliI CACNNNNGTG 1 cut(s) 114
PciI ACATGT 1 cut(s) 535
PctI GAATGC 2 cut(s) 22, 337
PdiI GCCGGC 1 cut(s) 92
PfeI GAWTC 2 cut(s) 301, 350
PflFI GACNNNGTC 1 cut(s) 40
PkrI GCNGC 3 cut(s) 7, 172, 458
PmaCI CACGTG 2 cut(s) 99, 112
PmlI CACGTG 2 cut(s) 99, 112
Ppu21I YACGTR 2 cut(s) 99, 112
PscI ACATGT 1 cut(s) 535
PspCI CACGTG 2 cut(s) 99, 112
PspN4I GGNNCC 1 cut(s) 55
PstI CTGCAG 1 cut(s) 458
PsyI GACNNNGTC 1 cut(s) 40
RsaI GTAC 1 cut(s) 406
RsaNI GTAC 1 cut(s) 405
RseI CAYNNNNRTG 3 cut(s) 114, 158, 248
SatI GCNGC 3 cut(s) 6, 171, 457
Sau3AI GATC 4 cut(s) 386, 501, 514, 521
SetI ASST 9 cut(s) 101, 114, 143, 216, 228, 299, 399, 433, 486
SfcI CTRYAG 2 cut(s) 420, 454
SmiMI CAYNNNNRTG 3 cut(s) 114, 158, 248
Sse9I AATT 2 cut(s) 81, 466
SsiI CCGC 5 cut(s) 102, 125, 230, 314, 459
SspMI CTAG 2 cut(s) 276, 354
TaaI ACNGT 1 cut(s) 409
TaiI ACGT 2 cut(s) 101, 114
TaqI TCGA 3 cut(s) 33, 78, 513
TasI AATT 2 cut(s) 81, 466
TfiI GAWTC 2 cut(s) 301, 350
TseFI GTSAC 1 cut(s) 42
TseI GCWGC 3 cut(s) 5, 170, 456
Tsp45I GTSAC 1 cut(s) 42
TspDTI ATGAA 4 cut(s) 139, 176, 194, 232
Tth111I GACNNNGTC 1 cut(s) 40
XapI RAATTY 1 cut(s) 466
XceI RCATGY 1 cut(s) 539
XmiI GTMKAC 1 cut(s) 486
XspI CTAG 2 cut(s) 276, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.