AT1G62935

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
23308760 .. 23309410
651 bp
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UTR
Exon/CDS
Intron
AT1G62935.1

Sequence Viewer

Length: 531 bp
ATGTTGAACATTATAATCAATGTCATGGAGATCATCTGGAGAACAATTGTTTCAACACTAATGCTCTTTTTCTTCTTGAGATATTTCAACAATCCTCTTCTTCTTTTCTTTTTCCTCTGTACGATTCTTTTCTTACTTATCATCGATCGTAATCGCTCTGTTTATGAAGAAACCGGAGATTTCTATGTTTTGTACACTTTTCAAGAAGACAATATGCTTGATGGTGAAATCATAGACAAGAACAGAGAATGTTGTGATTTCACAAGATATTACTATGATGATTGTTTTAGCTATTATGATGGTTTTGATGAAGTTGATAATGATGGTTGTATATGGAACGATGATGAAGATTTTAGCCAATGTAATCAAGATGGTGGTGATGATGGTATTGAAAACCGTGATGATGATGATAATCATGCCTATGGTGATGATGTTGATGATGACACATTGACGAGCAGGATTGAAGATTACATTGCAAACGTTTACAATGGATGGAGAGAAGAGAGACGAACCGACAAATTGTTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

21.15

Weight (kDa)

4.05

Isoelectric Point (pI)

42.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017949)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62935
fragaria_vesca FvH4_5g00851
malus_domestica MD00G1083200.v1.1
prunus_persica Prupe.5G081400_v2.0.a1
pyrus_communis pycom04g06910 pycom06g06410
rosa_laevigata RLG00000003695
rosa_roxburghii Rroxscaffold_3G00255560
rosa_rugosa Rorug07G0061700
rosa_samantha Rh7DG193200
rosa_wichuraiana Rw7G016460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 14
AclI AACGTT 1 cut(s) 480
AfaI GTAC 2 cut(s) 121, 194
AgsI TTSAA 6 cut(s) 7, 54, 88, 203, 392, 464
AluBI AGCT 1 cut(s) 291
AluI AGCT 1 cut(s) 291
Alw26I GTCTC 1 cut(s) 499
ArsI GACNNNNNNTTYG 2 cut(s) 506, 510
AsuHPI GGTGA 3 cut(s) 236, 389, 437
BbsI GAAGAC 1 cut(s) 213
BccI CCATC 6 cut(s) 215, 293, 317, 365, 377, 486
BcoDI GTCTC 1 cut(s) 499
BpiI GAAGAC 1 cut(s) 213
BpmI CTGGAG 1 cut(s) 58
BpuEI CTTGAG 1 cut(s) 97
Bsa29I ATCGAT 1 cut(s) 144
BsaBI GATNNNNATC 2 cut(s) 150, 411
BsaWI WCCGGW 1 cut(s) 173
Bse3DI GCAATG 1 cut(s) 471
Bse8I GATNNNNATC 2 cut(s) 150, 411
BseCI ATCGAT 1 cut(s) 144
BseGI GGATG 1 cut(s) 497
BseJI GATNNNNATC 2 cut(s) 150, 411
BseMI GCAATG 1 cut(s) 471
Bsh1285I CGRYCG 1 cut(s) 148
BshVI ATCGAT 1 cut(s) 144
BsiEI CGRYCG 1 cut(s) 148
BsiSI CCGG 1 cut(s) 174
BsmAI GTCTC 1 cut(s) 499
BsmBI CGTCTC 1 cut(s) 499
Bsp1407I TGTACA 1 cut(s) 192
Bsp143I GATC 2 cut(s) 30, 145
BspDI ATCGAT 1 cut(s) 144
BsrDI GCAATG 1 cut(s) 471
BsrGI TGTACA 1 cut(s) 192
BssMI GATC 2 cut(s) 30, 145
Bst4CI ACNGT 1 cut(s) 398
Bst6I CTCTTC 2 cut(s) 102, 495
BstAUI TGTACA 1 cut(s) 192
BstF5I GGATG 1 cut(s) 497
BstKTI GATC 2 cut(s) 33, 148
BstMAI GTCTC 1 cut(s) 499
BstMBI GATC 2 cut(s) 30, 145
BstMCI CGRYCG 1 cut(s) 148
BstV2I GAAGAC 1 cut(s) 213
Bsu15I ATCGAT 1 cut(s) 144
BsuTUI ATCGAT 1 cut(s) 144
BtsCI GGATG 1 cut(s) 497
ClaI ATCGAT 1 cut(s) 144
Csp6I GTAC 2 cut(s) 120, 193
CviAII CATG 2 cut(s) 25, 416
CviJI RGCY 2 cut(s) 291, 357
CviKI_1 RGCY 2 cut(s) 291, 357
CviQI GTAC 2 cut(s) 120, 193
DpnI GATC 2 cut(s) 32, 147
DpnII GATC 2 cut(s) 30, 145
Eam1104I CTCTTC 2 cut(s) 102, 495
EarI CTCTTC 2 cut(s) 102, 495
Esp3I CGTCTC 1 cut(s) 499
FaeI CATG 2 cut(s) 28, 419
FatI CATG 2 cut(s) 24, 415
FokI GGATG 1 cut(s) 504
GsuI CTGGAG 1 cut(s) 58
HapII CCGG 1 cut(s) 174
Hin1II CATG 2 cut(s) 28, 419
HinfI GANTC 1 cut(s) 124
HpaII CCGG 1 cut(s) 174
HphI GGTGA 3 cut(s) 236, 389, 437
Hpy166II GTNNAC 2 cut(s) 195, 484
Hpy188I TCNGA 1 cut(s) 530
Hpy188III TCNNGA 4 cut(s) 37, 76, 203, 368
Hpy8I GTNNAC 2 cut(s) 195, 484
HpyCH4III ACNGT 1 cut(s) 398
HpyCH4IV ACGT 1 cut(s) 480
HpyCH4V TGCA 1 cut(s) 476
HpySE526I ACGT 1 cut(s) 480
Hsp92II CATG 2 cut(s) 28, 419
Kzo9I GATC 2 cut(s) 30, 145
LpnPI CCDG 3 cut(s) 22, 187, 442
MaeII ACGT 1 cut(s) 480
MalI GATC 2 cut(s) 32, 147
MboI GATC 2 cut(s) 30, 145
MboII GAAGA 8 cut(s) 64, 89, 92, 179, 218, 359, 476, 512
MfeI CAATTG 1 cut(s) 45
MluCI AATT 2 cut(s) 45, 518
MnlI CCTC 2 cut(s) 105, 125
MslI CAYNNNNRTG 1 cut(s) 420
MspI CCGG 1 cut(s) 174
MunI CAATTG 1 cut(s) 45
NdeII GATC 2 cut(s) 30, 145
NlaIII CATG 2 cut(s) 28, 419
PfeI GAWTC 1 cut(s) 124
Ple19I CGATCG 1 cut(s) 148
PsiI TTATAA 1 cut(s) 14
Psp1406I AACGTT 1 cut(s) 480
PvuI CGATCG 1 cut(s) 148
RsaI GTAC 2 cut(s) 121, 194
RsaNI GTAC 2 cut(s) 120, 193
RseI CAYNNNNRTG 1 cut(s) 420
Sau3AI GATC 2 cut(s) 30, 145
SetI ASST 2 cut(s) 293, 483
SmiMI CAYNNNNRTG 1 cut(s) 420
SmlI CTYRAG 1 cut(s) 76
SmoI CTYRAG 1 cut(s) 76
Sse9I AATT 2 cut(s) 45, 518
TaaI ACNGT 1 cut(s) 398
TaiI ACGT 1 cut(s) 483
TaqI TCGA 1 cut(s) 144
TasI AATT 2 cut(s) 45, 518
TatI WGTACW 1 cut(s) 192
TfiI GAWTC 1 cut(s) 124
TspDTI ATGAA 3 cut(s) 180, 324, 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.