Rw7G016460

Phosphopantothenoylcysteine decarboxylase subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0017949
Physical Location & Seq
Forward (+)
16828263 .. 16829065
803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G016460.1

Sequence Viewer

Length: 645 bp
ATGCATGTTCAGAGAGGAGACTTCGGAATTAAACTATCAAAATCACACCTGTTTTTTTTCTTTTTTTTGGTAAACCAGGGCATGAGGCTCGTTTGGGTACCTAGGCCTGTGTTTCTATTGCTGTTCCTAGCTGTTGTTCTTGTCCTGAGCTCTTTGTTTCAGTCGATTTCGAAACAAAAAAATCTTCAATTCTCATCAAATCCTCTATTCGTGTTTTCGCTCTGTAACATCATAATCTTTGCCATCATTGTTGGAGATCATCGGCCACCTACTGAGGAAGTTGACAGCATCATACCATTCCTATCAGGTTCAGCAGAGGATGCAACTGATGATGTTGAGGATGATGGTAGCAACAAGCACTGCAATATGGATGGTCATGTTAATAGCAGTGAGGATGTTGATGATCAAGTTGATGAAAGTGAAGAAGAAGATGGAGAATATGATTCTGACGGTTACAACGAAGACGATGATGACAATGGTAGCGATGATGAAATTGGCTGGGAAGACTCAGACGAATCTGATGATAACTTGGAGATGAGGGTCGAAAACTTCATTGATAGGGTTTACAAGGGATGGCGAGAAGAGAGGTTAAGGGATACTCTATGCAATCCCCTGCAATTTTTAGGTTACATCAATCCCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

24.47

Weight (kDa)

4.09

Isoelectric Point (pI)

40.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017949)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62935
fragaria_vesca FvH4_5g00851
malus_domestica MD00G1083200.v1.1
prunus_persica Prupe.5G081400_v2.0.a1
pyrus_communis pycom04g06910 pycom06g06410
rosa_laevigata RLG00000003695
rosa_roxburghii Rroxscaffold_3G00255560
rosa_rugosa Rorug07G0061700
rosa_samantha Rh7DG193200
rosa_wichuraiana Rw7G016460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 643
Acc65I GGTACC 1 cut(s) 97
AccB1I GGYRCC 1 cut(s) 97
AcoI YGGCCR 1 cut(s) 263
AfaI GTAC 1 cut(s) 99
AgsI TTSAA 1 cut(s) 188
AjnI CCWGG 1 cut(s) 75
AluBI AGCT 2 cut(s) 131, 150
AluI AGCT 2 cut(s) 131, 150
Alw21I GWGCWC 1 cut(s) 152
Alw26I GTCTC 1 cut(s) 12
AoxI GGCC 2 cut(s) 104, 263
Asp718I GGTACC 1 cut(s) 97
AspA2I CCTAGG 1 cut(s) 101
AsuII TTCGAA 1 cut(s) 170
AvrII CCTAGG 1 cut(s) 101
BanI GGYRCC 1 cut(s) 97
BanII GRGCYC 1 cut(s) 152
BbsI GAAGAC 2 cut(s) 468, 510
Bbv12I GWGCWC 1 cut(s) 152
BccI CCATC 5 cut(s) 251, 338, 365, 425, 567
BcgI CGANNNNNNTGC 2 cut(s) 70, 104
BciT130I CCWGG 1 cut(s) 77
BciVI GTATCC 1 cut(s) 589
BclI TGATCA 1 cut(s) 403
BcoDI GTCTC 1 cut(s) 12
BfaI CTAG 2 cut(s) 102, 128
BfuI GTATCC 1 cut(s) 589
BlnI CCTAGG 1 cut(s) 101
Bme1390I CCNGG 1 cut(s) 77
BmiI GGNNCC 1 cut(s) 99
BmrFI CCNGG 1 cut(s) 77
BmsI GCATC 2 cut(s) 297, 310
BpiI GAAGAC 2 cut(s) 468, 510
Bpu10I CCTNAGC 1 cut(s) 146
Bpu14I TTCGAA 1 cut(s) 170
BsaJI CCNNGG 2 cut(s) 76, 101
BseBI CCWGG 1 cut(s) 77
BseDI CCNNGG 2 cut(s) 76, 101
BseGI GGATG 5 cut(s) 325, 346, 376, 400, 578
BseMII CTCAG 3 cut(s) 137, 264, 522
BseRI GAGGAG 1 cut(s) 30
BseYI CCCAGC 1 cut(s) 498
BshFI GGCC 2 cut(s) 106, 265
BshNI GGYRCC 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 152
BsmAI GTCTC 1 cut(s) 12
BsnI GGCC 2 cut(s) 106, 265
Bsp119I TTCGAA 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 152
Bsp143I GATC 2 cut(s) 256, 403
BspANI GGCC 2 cut(s) 106, 265
BspCNI CTCAG 3 cut(s) 138, 265, 521
BspLI GGNNCC 1 cut(s) 99
BspT104I TTCGAA 1 cut(s) 170
BspT107I GGYRCC 1 cut(s) 97
BssECI CCNNGG 2 cut(s) 76, 101
BssMI GATC 2 cut(s) 256, 403
BssT1I CCWWGG 1 cut(s) 101
Bst2UI CCWGG 1 cut(s) 77
Bst4CI ACNGT 1 cut(s) 452
Bst6I CTCTTC 1 cut(s) 576
BstAPI GCANNNNNTGC 1 cut(s) 320
BstBI TTCGAA 1 cut(s) 170
BstDEI CTNAG 3 cut(s) 146, 273, 508
BstF5I GGATG 5 cut(s) 325, 346, 376, 400, 578
BstKTI GATC 2 cut(s) 259, 406
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 2 cut(s) 256, 403
BstMWI GCNNNNNNNGC 1 cut(s) 320
BstNI CCWGG 1 cut(s) 77
BstNSI RCATGY 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 75
BstV2I GAAGAC 2 cut(s) 468, 510
BsuI GTATCC 1 cut(s) 589
BsuRI GGCC 2 cut(s) 106, 265
BtgZI GCGATG 1 cut(s) 498
BtsCI GGATG 5 cut(s) 325, 346, 376, 400, 578
BtsI GCAGTG 2 cut(s) 358, 394
BtsIMutI CAGTG 2 cut(s) 358, 394
Csp6I GTAC 1 cut(s) 98
CviAII CATG 3 cut(s) 5, 82, 377
CviJI RGCY 6 cut(s) 88, 106, 131, 150, 265, 498
CviKI_1 RGCY 6 cut(s) 88, 106, 131, 150, 265, 498
CviQI GTAC 1 cut(s) 98
DdeI CTNAG 3 cut(s) 146, 273, 508
DpnI GATC 2 cut(s) 258, 405
DpnII GATC 2 cut(s) 256, 403
EaeI YGGCCR 1 cut(s) 263
Eam1104I CTCTTC 1 cut(s) 576
EarI CTCTTC 1 cut(s) 576
Ecl136II GAGCTC 1 cut(s) 150
Eco130I CCWWGG 1 cut(s) 101
Eco147I AGGCCT 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 152
Eco53kI GAGCTC 1 cut(s) 150
EcoICRI GAGCTC 1 cut(s) 150
EcoRII CCWGG 1 cut(s) 75
EcoT14I CCWWGG 1 cut(s) 101
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 152
ErhI CCWWGG 1 cut(s) 101
FaeI CATG 3 cut(s) 8, 85, 380
FaiI YATR 9 cut(s) 6, 83, 233, 293, 368, 378, 441, 604, 643
FatI CATG 3 cut(s) 4, 81, 376
FbaI TGATCA 1 cut(s) 403
FokI GGATG 5 cut(s) 332, 353, 383, 407, 585
FriOI GRGCYC 1 cut(s) 152
FspBI CTAG 2 cut(s) 102, 128
GsaI CCCAGC 1 cut(s) 502
HaeIII GGCC 2 cut(s) 106, 265
Hin1II CATG 3 cut(s) 8, 85, 380
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HinfI GANTC 3 cut(s) 443, 506, 515
Hpy166II GTNNAC 3 cut(s) 73, 283, 565
Hpy188I TCNGA 5 cut(s) 12, 26, 448, 511, 520
Hpy188III TCNNGA 1 cut(s) 145
Hpy8I GTNNAC 3 cut(s) 73, 283, 565
HpyCH4III ACNGT 1 cut(s) 452
HpyCH4V TGCA 5 cut(s) 4, 323, 363, 606, 616
HpyF10VI GCNNNNNNNGC 1 cut(s) 320
HpyF3I CTNAG 3 cut(s) 146, 273, 508
Hsp92II CATG 3 cut(s) 8, 85, 380
KpnI GGTACC 1 cut(s) 101
Ksp22I TGATCA 1 cut(s) 403
Kzo9I GATC 2 cut(s) 256, 403
LpnPI CCDG 8 cut(s) 62, 62, 89, 120, 158, 291, 484, 626
LweI GCATC 2 cut(s) 297, 310
MaeI CTAG 2 cut(s) 102, 128
MaeIII GTNAC 3 cut(s) 224, 452, 626
MalI GATC 2 cut(s) 258, 405
MboI GATC 2 cut(s) 256, 403
MboII GAAGA 7 cut(s) 176, 434, 437, 440, 473, 515, 593
MhlI GDGCHC 1 cut(s) 152
MluCI AATT 4 cut(s) 27, 188, 492, 617
MlyI GAGTC 1 cut(s) 500
MmeI TCCRAC 1 cut(s) 232
MnlI CCTC 9 cut(s) 8, 78, 213, 268, 310, 331, 385, 531, 579
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 30, 381, 590
MspR9I CCNGG 1 cut(s) 77
MvaI CCWGG 1 cut(s) 77
MwoI GCNNNNNNNGC 1 cut(s) 320
NdeII GATC 2 cut(s) 256, 403
NlaIII CATG 3 cut(s) 8, 85, 380
NlaIV GGNNCC 1 cut(s) 99
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
NspV TTCGAA 1 cut(s) 170
PceI AGGCCT 1 cut(s) 106
PcsI WCGNNNNNNNCGW 1 cut(s) 456
PfeI GAWTC 2 cut(s) 443, 515
PleI GAGTC 1 cut(s) 500
PpsI GAGTC 1 cut(s) 500
PsiI TTATAA 1 cut(s) 643
Psp124BI GAGCTC 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 75
PspFI CCCAGC 1 cut(s) 498
PspGI CCWGG 1 cut(s) 75
PspN4I GGNNCC 1 cut(s) 99
RsaI GTAC 1 cut(s) 99
RsaNI GTAC 1 cut(s) 98
SacI GAGCTC 1 cut(s) 152
SaqAI TTAA 3 cut(s) 30, 381, 590
Sau3AI GATC 2 cut(s) 256, 403
SchI GAGTC 1 cut(s) 500
ScrFI CCNGG 1 cut(s) 77
SduI GDGCHC 1 cut(s) 152
SetI ASST 8 cut(s) 51, 103, 133, 152, 271, 310, 590, 628
SfaNI GCATC 2 cut(s) 297, 310
SfuI TTCGAA 1 cut(s) 170
Sse9I AATT 4 cut(s) 27, 188, 492, 617
SseBI AGGCCT 1 cut(s) 106
SspMI CTAG 2 cut(s) 102, 128
SstI GAGCTC 1 cut(s) 152
StuI AGGCCT 1 cut(s) 106
StyD4I CCNGG 1 cut(s) 75
StyI CCWWGG 1 cut(s) 101
TaaI ACNGT 1 cut(s) 452
TaqI TCGA 3 cut(s) 164, 170, 543
TasI AATT 4 cut(s) 27, 188, 492, 617
TfiI GAWTC 2 cut(s) 443, 515
Tru1I TTAA 3 cut(s) 30, 381, 590
Tru9I TTAA 3 cut(s) 30, 381, 590
TscAI CASTG 2 cut(s) 365, 394
TspDTI ATGAA 3 cut(s) 429, 504, 541
TspRI CASTG 2 cut(s) 365, 394
XceI RCATGY 1 cut(s) 8
XmaJI CCTAGG 1 cut(s) 101
XspI CTAG 2 cut(s) 102, 128
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.