Rh7DG193200

Phosphopantothenoylcysteine decarboxylase subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0017949
Physical Location & Seq
Forward (+)
18073945 .. 18074508
564 bp
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UTR
Exon/CDS
Intron
Rh7DG193200.1

Sequence Viewer

Length: 564 bp
ATGAGGCTCGTTTGGGTACCTAGGCCTGTGTTTCTATTGCTGTTCCTAGCTGTTGTTCTTGTCCTGAGCTCATTGTTTCAGTCGATTTCGAAACAAAAAAATCTTCAATTCTCATCGAATCCTCTATTCGTGTTTTCGCTCTGTAACATCATAATCTTTGCCATCATTGTTGGAGATCATCGGCCACCTACTGAGGAAGTTGACAGCATCTTACCATTCCTATCAGGTTCAGCAGAGGATGCAACTGATGGTGTTGAGGATGATGGTAGCAACAAGCACTGCAATATGGATGGTCATGTTAATGGCAGTGAGGATGTTGACGATCAAGTTGATGAAAGTGAAGAAGAAGATGGAGAATATGATTCTGACGGTTACAACGAAGATGATGATGACAATGGTAGCGATGATGAAATTGGCTGGGAAGACACAGACGAATCTGATGATAACTTGGAGACAAGGGTCGAAAACTTCATTGATAGGGTTTACAAGGGATGGCGAGAAGAGAGGTTAAGGGATACTCCATGCAATCCCCTGCAATTTTTAGGTTGCATCAATCCCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

21.11

Weight (kDa)

4.05

Isoelectric Point (pI)

43.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017949)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62935
fragaria_vesca FvH4_5g00851
malus_domestica MD00G1083200.v1.1
prunus_persica Prupe.5G081400_v2.0.a1
pyrus_communis pycom04g06910 pycom06g06410
rosa_laevigata RLG00000003695
rosa_roxburghii Rroxscaffold_3G00255560
rosa_rugosa Rorug07G0061700
rosa_samantha Rh7DG193200
rosa_wichuraiana Rw7G016460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 562
Acc65I GGTACC 1 cut(s) 16
AccB1I GGYRCC 1 cut(s) 16
AcoI YGGCCR 1 cut(s) 182
AfaI GTAC 1 cut(s) 18
AgsI TTSAA 1 cut(s) 107
AluBI AGCT 2 cut(s) 50, 69
AluI AGCT 2 cut(s) 50, 69
Alw21I GWGCWC 1 cut(s) 71
Alw26I GTCTC 1 cut(s) 446
AoxI GGCC 2 cut(s) 23, 182
Asp718I GGTACC 1 cut(s) 16
AspA2I CCTAGG 1 cut(s) 20
AsuII TTCGAA 1 cut(s) 89
AvrII CCTAGG 1 cut(s) 20
BanI GGYRCC 1 cut(s) 16
BanII GRGCYC 1 cut(s) 71
BbsI GAAGAC 1 cut(s) 429
Bbv12I GWGCWC 1 cut(s) 71
BccI CCATC 6 cut(s) 170, 242, 257, 284, 344, 486
BciVI GTATCC 1 cut(s) 508
BcoDI GTCTC 1 cut(s) 446
BfaI CTAG 2 cut(s) 21, 47
BfuI GTATCC 1 cut(s) 508
BlnI CCTAGG 1 cut(s) 20
BmiI GGNNCC 1 cut(s) 18
BmsI GCATC 3 cut(s) 216, 229, 558
BoxI GACNNNNGTC 1 cut(s) 458
BpiI GAAGAC 1 cut(s) 429
Bpu10I CCTNAGC 1 cut(s) 65
Bpu14I TTCGAA 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 20
BseGI GGATG 5 cut(s) 244, 265, 295, 319, 497
BseMII CTCAG 2 cut(s) 56, 183
BseYI CCCAGC 1 cut(s) 417
BshFI GGCC 2 cut(s) 25, 184
BshNI GGYRCC 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 71
BsmAI GTCTC 1 cut(s) 446
BsnI GGCC 2 cut(s) 25, 184
Bsp119I TTCGAA 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 71
Bsp143I GATC 2 cut(s) 175, 322
BspANI GGCC 2 cut(s) 25, 184
BspCNI CTCAG 2 cut(s) 57, 184
BspLI GGNNCC 1 cut(s) 18
BspT104I TTCGAA 1 cut(s) 89
BspT107I GGYRCC 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 20
BssMI GATC 2 cut(s) 175, 322
BssT1I CCWWGG 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 371
Bst6I CTCTTC 1 cut(s) 495
BstAPI GCANNNNNTGC 1 cut(s) 239
BstBI TTCGAA 1 cut(s) 89
BstDEI CTNAG 2 cut(s) 65, 192
BstF5I GGATG 5 cut(s) 244, 265, 295, 319, 497
BstKTI GATC 2 cut(s) 178, 325
BstMAI GTCTC 1 cut(s) 446
BstMBI GATC 2 cut(s) 175, 322
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstPAI GACNNNNGTC 1 cut(s) 458
BstV2I GAAGAC 1 cut(s) 429
BsuI GTATCC 1 cut(s) 508
BsuRI GGCC 2 cut(s) 25, 184
BtgZI GCGATG 1 cut(s) 417
BtsCI GGATG 5 cut(s) 244, 265, 295, 319, 497
BtsI GCAGTG 2 cut(s) 277, 313
BtsIMutI CAGTG 2 cut(s) 277, 313
Csp6I GTAC 1 cut(s) 17
CviAII CATG 2 cut(s) 296, 522
CviJI RGCY 6 cut(s) 7, 25, 50, 69, 184, 417
CviKI_1 RGCY 6 cut(s) 7, 25, 50, 69, 184, 417
CviQI GTAC 1 cut(s) 17
DdeI CTNAG 2 cut(s) 65, 192
DpnI GATC 2 cut(s) 177, 324
DpnII GATC 2 cut(s) 175, 322
EaeI YGGCCR 1 cut(s) 182
Eam1104I CTCTTC 1 cut(s) 495
EarI CTCTTC 1 cut(s) 495
Ecl136II GAGCTC 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 20
Eco147I AGGCCT 1 cut(s) 25
Eco24I GRGCYC 1 cut(s) 71
Eco53kI GAGCTC 1 cut(s) 69
EcoICRI GAGCTC 1 cut(s) 69
EcoT14I CCWWGG 1 cut(s) 20
EcoT38I GRGCYC 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 2 cut(s) 299, 525
FaiI YATR 6 cut(s) 152, 287, 297, 360, 523, 562
FatI CATG 2 cut(s) 295, 521
FokI GGATG 5 cut(s) 251, 272, 302, 326, 504
FriOI GRGCYC 1 cut(s) 71
FspBI CTAG 2 cut(s) 21, 47
GsaI CCCAGC 1 cut(s) 421
HaeIII GGCC 2 cut(s) 25, 184
Hin1II CATG 2 cut(s) 299, 525
HincII GTYRAC 2 cut(s) 202, 319
HindII GTYRAC 2 cut(s) 202, 319
HinfI GANTC 3 cut(s) 118, 362, 434
Hpy166II GTNNAC 3 cut(s) 202, 319, 484
Hpy188I TCNGA 2 cut(s) 367, 439
Hpy188III TCNNGA 1 cut(s) 64
Hpy8I GTNNAC 3 cut(s) 202, 319, 484
HpyCH4III ACNGT 1 cut(s) 371
HpyCH4V TGCA 5 cut(s) 242, 282, 525, 535, 549
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 2 cut(s) 65, 192
Hsp92II CATG 2 cut(s) 299, 525
KpnI GGTACC 1 cut(s) 20
Kzo9I GATC 2 cut(s) 175, 322
LpnPI CCDG 5 cut(s) 39, 77, 210, 403, 545
LweI GCATC 3 cut(s) 216, 229, 558
MaeI CTAG 2 cut(s) 21, 47
MaeIII GTNAC 2 cut(s) 143, 371
MalI GATC 2 cut(s) 177, 324
MboI GATC 2 cut(s) 175, 322
MboII GAAGA 7 cut(s) 95, 353, 356, 359, 392, 434, 512
MhlI GDGCHC 1 cut(s) 71
MluCI AATT 3 cut(s) 107, 411, 536
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 6 cut(s) 132, 187, 229, 250, 304, 498
MseI TTAA 2 cut(s) 300, 509
MslI CAYNNNNRTG 1 cut(s) 300
MwoI GCNNNNNNNGC 1 cut(s) 239
NdeII GATC 2 cut(s) 175, 322
NlaIII CATG 2 cut(s) 299, 525
NlaIV GGNNCC 1 cut(s) 18
NspV TTCGAA 1 cut(s) 89
PceI AGGCCT 1 cut(s) 25
PcsI WCGNNNNNNNCGW 1 cut(s) 375
PfeI GAWTC 3 cut(s) 118, 362, 434
PshAI GACNNNNGTC 1 cut(s) 458
PsiI TTATAA 1 cut(s) 562
Psp124BI GAGCTC 1 cut(s) 71
PspFI CCCAGC 1 cut(s) 417
PspN4I GGNNCC 1 cut(s) 18
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
RseI CAYNNNNRTG 1 cut(s) 300
SacI GAGCTC 1 cut(s) 71
SaqAI TTAA 2 cut(s) 300, 509
Sau3AI GATC 2 cut(s) 175, 322
SduI GDGCHC 1 cut(s) 71
SetI ASST 7 cut(s) 22, 52, 71, 190, 229, 509, 547
SfaNI GCATC 3 cut(s) 216, 229, 558
SfuI TTCGAA 1 cut(s) 89
SmiMI CAYNNNNRTG 1 cut(s) 300
Sse9I AATT 3 cut(s) 107, 411, 536
SseBI AGGCCT 1 cut(s) 25
SspMI CTAG 2 cut(s) 21, 47
SstI GAGCTC 1 cut(s) 71
StuI AGGCCT 1 cut(s) 25
StyI CCWWGG 1 cut(s) 20
TaaI ACNGT 1 cut(s) 371
TaqI TCGA 4 cut(s) 83, 89, 116, 462
TasI AATT 3 cut(s) 107, 411, 536
TfiI GAWTC 3 cut(s) 118, 362, 434
Tru1I TTAA 2 cut(s) 300, 509
Tru9I TTAA 2 cut(s) 300, 509
TscAI CASTG 2 cut(s) 284, 313
TspDTI ATGAA 3 cut(s) 348, 423, 460
TspRI CASTG 2 cut(s) 284, 313
XmaJI CCTAGG 1 cut(s) 20
XspI CTAG 2 cut(s) 21, 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.