RLG00000003695

Phosphopantothenoylcysteine decarboxylase subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0017949
Physical Location & Seq
Reverse (-)
51723887 .. 51724450
564 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003695

Sequence Viewer

Length: 399 bp
ATGAGGCTCGTTTGGGTACCTAGGCCTGTGTTTCTATTGCTATTCCTAGCTGTTGTTCTTGTCCTGAGCTCTTTGTTTCAGTCGATTTCGAAACAAAAAAATCTTCAATTCTCATCGAATCCTCTATTCGTGTTTTCGCTATGTAACATCATAATCTTTGCCCTCATTGTTGGAGATCATCGGCCGCCTACCGAGGAAGTTGACAGCATCTTACCATTCCTATCAGTTTCAGCAGAGGATGCAACTTATGATATTGAGGATGATGATGAATCTGATGACAACTTGGAGATGAGAGTCGAAAACTTCATTGATAGGGTTTACAAGGGATGGCGAGAAGAGAGGCTAAGGGATAGTCTATGCAATCCCCTGCAATTTTTTGGTTACATCAATCCCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.32

Weight (kDa)

4.42

Isoelectric Point (pI)

48.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017949)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62935
fragaria_vesca FvH4_5g00851
malus_domestica MD00G1083200.v1.1
prunus_persica Prupe.5G081400_v2.0.a1
pyrus_communis pycom04g06910 pycom06g06410
rosa_laevigata RLG00000003695
rosa_roxburghii Rroxscaffold_3G00255560
rosa_rugosa Rorug07G0061700
rosa_samantha Rh7DG193200
rosa_wichuraiana Rw7G016460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 397
Acc65I GGTACC 1 cut(s) 16
AccB1I GGYRCC 1 cut(s) 16
AciI CCGC 1 cut(s) 185
AcoI YGGCCR 1 cut(s) 182
AfaI GTAC 1 cut(s) 18
AgsI TTSAA 1 cut(s) 107
AluBI AGCT 2 cut(s) 50, 69
AluI AGCT 2 cut(s) 50, 69
Alw21I GWGCWC 1 cut(s) 71
AoxI GGCC 2 cut(s) 23, 182
Asp718I GGTACC 1 cut(s) 16
AspA2I CCTAGG 1 cut(s) 20
AsuII TTCGAA 1 cut(s) 89
AvrII CCTAGG 1 cut(s) 20
BanI GGYRCC 1 cut(s) 16
BanII GRGCYC 1 cut(s) 71
Bbv12I GWGCWC 1 cut(s) 71
BccI CCATC 1 cut(s) 321
BfaI CTAG 2 cut(s) 21, 47
BisI GCNGC 1 cut(s) 185
BlnI CCTAGG 1 cut(s) 20
BlsI GCNGC 1 cut(s) 186
BmiI GGNNCC 1 cut(s) 18
BmsI GCATC 2 cut(s) 216, 229
Bpu10I CCTNAGC 2 cut(s) 65, 344
Bpu14I TTCGAA 1 cut(s) 89
BsaJI CCNNGG 2 cut(s) 20, 192
BseDI CCNNGG 2 cut(s) 20, 192
BseGI GGATG 3 cut(s) 244, 265, 332
BseMII CTCAG 1 cut(s) 56
BseX3I CGGCCG 1 cut(s) 182
Bsh1285I CGRYCG 1 cut(s) 185
BshFI GGCC 2 cut(s) 25, 184
BshNI GGYRCC 1 cut(s) 16
BsiEI CGRYCG 1 cut(s) 185
BsiHKAI GWGCWC 1 cut(s) 71
BsnI GGCC 2 cut(s) 25, 184
Bsp119I TTCGAA 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 71
Bsp143I GATC 1 cut(s) 175
BspACI CCGC 1 cut(s) 185
BspANI GGCC 2 cut(s) 25, 184
BspCNI CTCAG 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 18
BspT104I TTCGAA 1 cut(s) 89
BspT107I GGYRCC 1 cut(s) 16
BssECI CCNNGG 2 cut(s) 20, 192
BssMI GATC 1 cut(s) 175
BssT1I CCWWGG 1 cut(s) 20
Bst6I CTCTTC 1 cut(s) 330
BstAPI GCANNNNNTGC 1 cut(s) 239
BstBI TTCGAA 1 cut(s) 89
BstDEI CTNAG 2 cut(s) 65, 344
BstF5I GGATG 3 cut(s) 244, 265, 332
BstKTI GATC 1 cut(s) 178
BstMBI GATC 1 cut(s) 175
BstMCI CGRYCG 1 cut(s) 185
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstZI CGGCCG 1 cut(s) 182
BsuRI GGCC 2 cut(s) 25, 184
BtsCI GGATG 3 cut(s) 244, 265, 332
Csp6I GTAC 1 cut(s) 17
CviJI RGCY 6 cut(s) 7, 25, 50, 69, 184, 343
CviKI_1 RGCY 6 cut(s) 7, 25, 50, 69, 184, 343
CviQI GTAC 1 cut(s) 17
DdeI CTNAG 2 cut(s) 65, 344
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
EaeI YGGCCR 1 cut(s) 182
EagI CGGCCG 1 cut(s) 182
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
Ecl136II GAGCTC 1 cut(s) 69
EclXI CGGCCG 1 cut(s) 182
Eco130I CCWWGG 1 cut(s) 20
Eco147I AGGCCT 1 cut(s) 25
Eco24I GRGCYC 1 cut(s) 71
Eco52I CGGCCG 1 cut(s) 182
Eco53kI GAGCTC 1 cut(s) 69
EcoICRI GAGCTC 1 cut(s) 69
EcoT14I CCWWGG 1 cut(s) 20
EcoT38I GRGCYC 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 20
FaiI YATR 5 cut(s) 142, 152, 249, 358, 397
Fnu4HI GCNGC 1 cut(s) 185
FokI GGATG 3 cut(s) 251, 272, 339
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 1 cut(s) 185
FspBI CTAG 2 cut(s) 21, 47
GluI GCNGC 1 cut(s) 185
HaeIII GGCC 2 cut(s) 25, 184
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 3 cut(s) 118, 269, 294
Hpy166II GTNNAC 2 cut(s) 202, 319
Hpy188I TCNGA 1 cut(s) 274
Hpy188III TCNNGA 1 cut(s) 64
Hpy8I GTNNAC 2 cut(s) 202, 319
HpyCH4V TGCA 3 cut(s) 242, 360, 370
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 2 cut(s) 65, 344
KpnI GGTACC 1 cut(s) 20
Kzo9I GATC 1 cut(s) 175
LpnPI CCDG 3 cut(s) 39, 77, 380
LweI GCATC 2 cut(s) 216, 229
MaeI CTAG 2 cut(s) 21, 47
MaeIII GTNAC 2 cut(s) 143, 380
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MboII GAAGA 2 cut(s) 95, 347
MhlI GDGCHC 1 cut(s) 71
MluCI AATT 2 cut(s) 107, 371
MlyI GAGTC 1 cut(s) 303
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 6 cut(s) 132, 173, 187, 229, 250, 333
MwoI GCNNNNNNNGC 1 cut(s) 239
NdeII GATC 1 cut(s) 175
NlaIV GGNNCC 1 cut(s) 18
NspV TTCGAA 1 cut(s) 89
PceI AGGCCT 1 cut(s) 25
PfeI GAWTC 2 cut(s) 118, 269
PkrI GCNGC 1 cut(s) 186
PleI GAGTC 1 cut(s) 302
PpsI GAGTC 1 cut(s) 302
PsiI TTATAA 1 cut(s) 397
Psp124BI GAGCTC 1 cut(s) 71
PspN4I GGNNCC 1 cut(s) 18
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
SacI GAGCTC 1 cut(s) 71
SatI GCNGC 1 cut(s) 185
Sau3AI GATC 1 cut(s) 175
SchI GAGTC 1 cut(s) 303
SduI GDGCHC 1 cut(s) 71
SetI ASST 3 cut(s) 22, 52, 71
SfaNI GCATC 2 cut(s) 216, 229
SfuI TTCGAA 1 cut(s) 89
Sse9I AATT 2 cut(s) 107, 371
SseBI AGGCCT 1 cut(s) 25
SsiI CCGC 1 cut(s) 185
SspMI CTAG 2 cut(s) 21, 47
SstI GAGCTC 1 cut(s) 71
StuI AGGCCT 1 cut(s) 25
StyI CCWWGG 1 cut(s) 20
TaqI TCGA 4 cut(s) 83, 89, 116, 297
TasI AATT 2 cut(s) 107, 371
TauI GCSGC 1 cut(s) 187
TfiI GAWTC 2 cut(s) 118, 269
TspDTI ATGAA 2 cut(s) 282, 295
XmaJI CCTAGG 1 cut(s) 20
XspI CTAG 2 cut(s) 21, 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.