FvH4_5g00851

Phosphopantothenoylcysteine decarboxylase subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0017949
Physical Location & Seq
Reverse (-)
481249 .. 482207
959 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g00851.t1

Sequence Viewer

Length: 675 bp
ATGAAGCAATCAGCTCTATATATTTGTATGTTCGAAGAGGAGACTTCAGAATTAAACAATCAAAACCGCACCTATTCGTTTGTTAACCAGGGCATGAAGCTTGTTTGGGTACCTAGGCCTGTCTTTCTGTTGCTGTTTATAGCTATTGTTCTTGTGCTGAGCTCTTTGTTTCAGTCGATTTCCAACCAAAGAAATCTTAAGTTCTCATCCAATCCTCTGTTTGTGTTCTCGCTCTGTAACATCATAGTCTTAGCTATCATAGTTGGAGATCATAGACCACCTACCGAGGAAGTTGAAAGCATCTTACCATTCCTGTCCAGTTCATCAGAGGATGCAACTGACGATATTGAGGATGATGGTAGCAACAAGCACTGTAATATCGACGATCATGTTAATGGCAATGAGGATGTTGATGATGAAGTTGATGAAAGTGAAGAAGAAGATGCAGATTATGATTCTGACGGTTACAATGAAGATGATGACGACAATGGTAGCAATGATGAAATTGGTTGGGGAGACACGGATGAATCTGATGATAACTTGGAGACAAGAGTAGAAGACTTCATTGGTAGGGTTTACAAGGGATGGCAGGAAGAGAGGTTAAGGGATCTATGCAGTCCCCTGCAGTTTTTTGGTTGCATCAATCCCTTTGACAGGTCCACAGCCCTTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

25.5

Weight (kDa)

4.05

Isoelectric Point (pI)

56.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017949)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62935
fragaria_vesca FvH4_5g00851
malus_domestica MD00G1083200.v1.1
prunus_persica Prupe.5G081400_v2.0.a1
pyrus_communis pycom04g06910 pycom06g06410
rosa_laevigata RLG00000003695
rosa_roxburghii Rroxscaffold_3G00255560
rosa_rugosa Rorug07G0061700
rosa_samantha Rh7DG193200
rosa_wichuraiana Rw7G016460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 109
AccB1I GGYRCC 1 cut(s) 109
AciI CCGC 1 cut(s) 67
AclWI GGATC 1 cut(s) 615
AcuI CTGAAG 1 cut(s) 30
AfaI GTAC 1 cut(s) 111
AfiI CCNNNNNNNGG 1 cut(s) 654
AflII CTTAAG 1 cut(s) 197
AgsI TTSAA 1 cut(s) 296
AjnI CCWGG 1 cut(s) 87
AjuI GAANNNNNNNTTGG 2 cut(s) 549, 581
AluBI AGCT 5 cut(s) 14, 100, 143, 162, 254
AluI AGCT 5 cut(s) 14, 100, 143, 162, 254
Alw21I GWGCWC 1 cut(s) 164
Alw26I GTCTC 3 cut(s) 35, 510, 539
AlwI GGATC 1 cut(s) 615
AoxI GGCC 1 cut(s) 116
Asp718I GGTACC 1 cut(s) 109
AspA2I CCTAGG 1 cut(s) 113
AspS9I GGNCC 1 cut(s) 657
AsuII TTCGAA 1 cut(s) 33
AvaII GGWCC 1 cut(s) 657
AvrII CCTAGG 1 cut(s) 113
BanI GGYRCC 1 cut(s) 109
BanII GRGCYC 1 cut(s) 164
BbsI GAAGAC 1 cut(s) 564
Bbv12I GWGCWC 1 cut(s) 164
BccI CCATC 2 cut(s) 350, 579
BciT130I CCWGG 1 cut(s) 89
BcoDI GTCTC 3 cut(s) 35, 510, 539
BfaI CTAG 1 cut(s) 114
BfmI CTRYAG 1 cut(s) 623
BfrI CTTAAG 1 cut(s) 197
BlnI CCTAGG 1 cut(s) 113
BlpI GCTNAGC 1 cut(s) 158
Bme1390I CCNGG 1 cut(s) 89
Bme18I GGWCC 1 cut(s) 657
BmgT120I GGNCC 1 cut(s) 657
BmiI GGNNCC 1 cut(s) 111
BmrFI CCNGG 1 cut(s) 89
BmsI GCATC 4 cut(s) 309, 322, 433, 648
BpiI GAAGAC 1 cut(s) 564
Bpu1102I GCTNAGC 1 cut(s) 158
Bpu14I TTCGAA 1 cut(s) 33
BsaJI CCNNGG 3 cut(s) 88, 113, 285
Bsc4I CCNNNNNNNGG 1 cut(s) 654
Bse1I ACTGG 1 cut(s) 318
Bse3DI GCAATG 2 cut(s) 406, 502
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 3 cut(s) 88, 113, 285
BseGI GGATG 6 cut(s) 206, 337, 358, 412, 529, 590
BseLI CCNNNNNNNGG 1 cut(s) 654
BseMI GCAATG 2 cut(s) 406, 502
BseMII CTCAG 1 cut(s) 149
BseNI ACTGG 1 cut(s) 318
BseRI GAGGAG 1 cut(s) 53
BshFI GGCC 1 cut(s) 118
BshNI GGYRCC 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 164
BslFI GGGAC 1 cut(s) 603
BslI CCNNNNNNNGG 1 cut(s) 654
BsmAI GTCTC 3 cut(s) 35, 510, 539
BsmFI GGGAC 1 cut(s) 603
BsnI GGCC 1 cut(s) 118
Bsp119I TTCGAA 1 cut(s) 33
Bsp1286I GDGCHC 1 cut(s) 164
Bsp143I GATC 3 cut(s) 268, 385, 607
Bsp1720I GCTNAGC 1 cut(s) 158
BspACI CCGC 1 cut(s) 67
BspANI GGCC 1 cut(s) 118
BspCNI CTCAG 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 111
BspMAI CTGCAG 1 cut(s) 627
BspPI GGATC 1 cut(s) 615
BspT104I TTCGAA 1 cut(s) 33
BspT107I GGYRCC 1 cut(s) 109
BspTI CTTAAG 1 cut(s) 197
BsrDI GCAATG 2 cut(s) 406, 502
BsrI ACTGG 1 cut(s) 318
BssECI CCNNGG 3 cut(s) 88, 113, 285
BssMI GATC 3 cut(s) 268, 385, 607
BssT1I CCWWGG 1 cut(s) 113
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 2 cut(s) 374, 464
Bst6I CTCTTC 2 cut(s) 30, 588
BstAFI CTTAAG 1 cut(s) 197
BstBI TTCGAA 1 cut(s) 33
BstDEI CTNAG 2 cut(s) 158, 250
BstENI CCTNNNNNAGG 1 cut(s) 652
BstF5I GGATG 6 cut(s) 206, 337, 358, 412, 529, 590
BstKTI GATC 3 cut(s) 271, 388, 610
BstMAI GTCTC 3 cut(s) 35, 510, 539
BstMBI GATC 3 cut(s) 268, 385, 607
BstNI CCWGG 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 87
BstSFI CTRYAG 1 cut(s) 623
BstV2I GAAGAC 1 cut(s) 564
BstX2I RGATCY 1 cut(s) 607
BstYI RGATCY 1 cut(s) 607
BsuRI GGCC 1 cut(s) 118
BtsCI GGATG 6 cut(s) 206, 337, 358, 412, 529, 590
BtsIMutI CAGTG 1 cut(s) 370
Cfr13I GGNCC 1 cut(s) 657
Csp6I GTAC 1 cut(s) 110
CviAII CATG 2 cut(s) 94, 389
CviJI RGCY 7 cut(s) 14, 100, 118, 143, 162, 254, 665
CviKI_1 RGCY 7 cut(s) 14, 100, 118, 143, 162, 254, 665
CviQI GTAC 1 cut(s) 110
DdeI CTNAG 2 cut(s) 158, 250
DpnI GATC 3 cut(s) 270, 387, 609
DpnII GATC 3 cut(s) 268, 385, 607
Eam1104I CTCTTC 2 cut(s) 30, 588
EarI CTCTTC 2 cut(s) 30, 588
Ecl136II GAGCTC 1 cut(s) 162
Eco130I CCWWGG 1 cut(s) 113
Eco147I AGGCCT 1 cut(s) 118
Eco24I GRGCYC 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 657
Eco53kI GAGCTC 1 cut(s) 162
Eco57I CTGAAG 1 cut(s) 30
EcoICRI GAGCTC 1 cut(s) 162
EcoNI CCTNNNNNAGG 1 cut(s) 652
EcoRII CCWGG 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 113
EcoT38I GRGCYC 1 cut(s) 164
ErhI CCWWGG 1 cut(s) 113
FaeI CATG 2 cut(s) 97, 392
FaqI GGGAC 1 cut(s) 603
FatI CATG 2 cut(s) 93, 388
FokI GGATG 6 cut(s) 193, 344, 365, 419, 536, 597
FriOI GRGCYC 1 cut(s) 164
FspBI CTAG 1 cut(s) 114
HaeIII GGCC 1 cut(s) 118
Hin1II CATG 2 cut(s) 97, 392
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 2 cut(s) 455, 527
HpaI GTTAAC 1 cut(s) 85
Hpy166II GTNNAC 3 cut(s) 85, 577, 660
Hpy188I TCNGA 4 cut(s) 49, 328, 460, 532
Hpy8I GTNNAC 3 cut(s) 85, 577, 660
Hpy99I CGWCG 1 cut(s) 386
HpyCH4III ACNGT 2 cut(s) 374, 464
HpyCH4V TGCA 5 cut(s) 335, 446, 615, 625, 639
HpyF3I CTNAG 2 cut(s) 158, 250
Hsp92II CATG 2 cut(s) 97, 392
KpnI GGTACC 1 cut(s) 113
KspAI GTTAAC 1 cut(s) 85
Kzo9I GATC 3 cut(s) 268, 385, 607
LpnPI CCDG 8 cut(s) 74, 101, 132, 326, 331, 575, 635, 640
LweI GCATC 4 cut(s) 309, 322, 433, 648
MaeI CTAG 1 cut(s) 114
MaeIII GTNAC 2 cut(s) 236, 464
MalI GATC 3 cut(s) 270, 387, 609
MboI GATC 3 cut(s) 268, 385, 607
MboII GAAGA 7 cut(s) 47, 446, 449, 452, 485, 569, 605
MflI RGATCY 1 cut(s) 607
MhlI GDGCHC 1 cut(s) 164
MluCI AATT 2 cut(s) 50, 504
MmeI TCCRAC 2 cut(s) 207, 244
MnlI CCTC 7 cut(s) 31, 225, 280, 322, 343, 397, 591
MseI TTAA 5 cut(s) 53, 84, 198, 393, 602
MslI CAYNNNNRTG 1 cut(s) 393
MspCI CTTAAG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 89
NdeII GATC 3 cut(s) 268, 385, 607
NlaIII CATG 2 cut(s) 97, 392
NlaIV GGNNCC 1 cut(s) 111
NspV TTCGAA 1 cut(s) 33
PceI AGGCCT 1 cut(s) 118
PfeI GAWTC 2 cut(s) 455, 527
Psp124BI GAGCTC 1 cut(s) 164
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 111
PspPI GGNCC 1 cut(s) 657
PstI CTGCAG 1 cut(s) 627
PsuI RGATCY 1 cut(s) 607
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
RseI CAYNNNNRTG 1 cut(s) 393
SacI GAGCTC 1 cut(s) 164
SaqAI TTAA 5 cut(s) 53, 84, 198, 393, 602
Sau3AI GATC 3 cut(s) 268, 385, 607
Sau96I GGNCC 1 cut(s) 657
ScrFI CCNGG 1 cut(s) 89
SduI GDGCHC 1 cut(s) 164
SfaNI GCATC 4 cut(s) 309, 322, 433, 648
SfcI CTRYAG 1 cut(s) 623
SfuI TTCGAA 1 cut(s) 33
SinI GGWCC 1 cut(s) 657
SmiMI CAYNNNNRTG 1 cut(s) 393
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 2 cut(s) 50, 504
SseBI AGGCCT 1 cut(s) 118
SsiI CCGC 1 cut(s) 67
SspMI CTAG 1 cut(s) 114
SstI GAGCTC 1 cut(s) 164
StuI AGGCCT 1 cut(s) 118
StyD4I CCNGG 1 cut(s) 87
StyI CCWWGG 1 cut(s) 113
TaaI ACNGT 2 cut(s) 374, 464
TaqI TCGA 3 cut(s) 33, 176, 381
TasI AATT 2 cut(s) 50, 504
TfiI GAWTC 2 cut(s) 455, 527
Tru1I TTAA 5 cut(s) 53, 84, 198, 393, 602
Tru9I TTAA 5 cut(s) 53, 84, 198, 393, 602
TscAI CASTG 1 cut(s) 377
TspGWI ACGGA 1 cut(s) 536
TspRI CASTG 1 cut(s) 377
Vha464I CTTAAG 1 cut(s) 197
VpaK11BI GGWCC 1 cut(s) 657
XagI CCTNNNNNAGG 1 cut(s) 652
XmaJI CCTAGG 1 cut(s) 113
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.