MD00G1083200.v1.1

Phosphopantothenoylcysteine decarboxylase subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0017949
Physical Location & Seq
Forward (+)
16590182 .. 16591239
1058 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1083200.v1.1.491

Sequence Viewer

Length: 555 bp
ATGATGTTTGTTGGCGTACCAAGACCTATTTTTCTATTGCTGTTCTTAGCTTCTGCTCTTGTTCTGAGCTATTTTCTACAATCAACCTCACGACGAGATCTTCAATTCTCGTCCAATCCTCTGTTTGTGTTTTCGTTGTTTAACATCATTATCGGTGCCATCATTGTTGGAAATCACAGGCCATCTTCCGGGGAAGCCGATGACGCCATATCTTTCATGCATCATTCGTATGAACTAGAAGAAGATGGAGCTGATGACGCTGAGGATGCAAAGAGTGATAAATACTCGAGTTTGGAGGGTTGTGACCACAGTAGGGACCATGTTGATGACAACGATGATGGTGAAAGTGAAGATGATGATTTTGATTTTGAAGGCTACGAAGAAGATGACGACGACAATGGTAGCGATGATGAGATTGGTTGGGGAGACATGGATGAATATGACTGTAATTTGGAGAAACGAATCGAAGACTTCATTGCCAAGGTTAACAAGGGATGGAGGGAAGAGAGGTTAAGGGATGGTCTCTCCTATCCCTTACAGCTAACCTACCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

20.98

Weight (kDa)

4.05

Isoelectric Point (pI)

49.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017949)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62935
fragaria_vesca FvH4_5g00851
malus_domestica MD00G1083200.v1.1
prunus_persica Prupe.5G081400_v2.0.a1
pyrus_communis pycom04g06910 pycom06g06410
rosa_laevigata RLG00000003695
rosa_roxburghii Rroxscaffold_3G00255560
rosa_rugosa Rorug07G0061700
rosa_samantha Rh7DG193200
rosa_wichuraiana Rw7G016460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 155
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 1 cut(s) 18
AfiI CCNNNNNNNGG 2 cut(s) 188, 313
AgsI TTSAA 2 cut(s) 104, 371
AluBI AGCT 4 cut(s) 50, 69, 251, 541
AluI AGCT 4 cut(s) 50, 69, 251, 541
Alw26I GTCTC 2 cut(s) 420, 527
Ama87I CYCGRG 1 cut(s) 286
AoxI GGCC 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 316
AsuC2I CCSGG 1 cut(s) 190
AsuHPI GGTGA 1 cut(s) 353
AvaI CYCGRG 1 cut(s) 286
AvaII GGWCC 1 cut(s) 316
BanI GGYRCC 1 cut(s) 155
BbsI GAAGAC 1 cut(s) 474
BbvCI CCTCAGC 1 cut(s) 261
BccI CCATC 6 cut(s) 167, 190, 239, 332, 489, 512
BcnI CCSGG 1 cut(s) 190
BcoDI GTCTC 2 cut(s) 420, 527
BfaI CTAG 1 cut(s) 236
BglII AGATCT 1 cut(s) 97
Bme1390I CCNGG 1 cut(s) 190
Bme18I GGWCC 1 cut(s) 316
BmeT110I CYCGRG 1 cut(s) 286
BmgT120I GGNCC 1 cut(s) 316
BmiI GGNNCC 2 cut(s) 157, 317
BmrFI CCNGG 1 cut(s) 190
BmsI GCATC 2 cut(s) 229, 256
BpiI GAAGAC 1 cut(s) 474
Bpu10I CCTNAGC 1 cut(s) 261
BpuMI CCSGG 1 cut(s) 190
BsaHI GRCGYC 1 cut(s) 204
BsaI GGTCTC 1 cut(s) 527
BsaJI CCNNGG 2 cut(s) 189, 480
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 313
Bse3DI GCAATG 1 cut(s) 474
BseDI CCNNGG 2 cut(s) 189, 480
BseGI GGATG 4 cut(s) 271, 439, 500, 523
BseLI CCNNNNNNNGG 2 cut(s) 188, 313
BseMI GCAATG 1 cut(s) 474
BseMII CTCAG 2 cut(s) 56, 252
BshFI GGCC 1 cut(s) 181
BshNI GGYRCC 1 cut(s) 155
BsiHKCI CYCGRG 1 cut(s) 286
BsiSI CCGG 1 cut(s) 189
BslFI GGGAC 1 cut(s) 329
BslI CCNNNNNNNGG 2 cut(s) 188, 313
BsmAI GTCTC 2 cut(s) 420, 527
BsmFI GGGAC 1 cut(s) 329
BsnI GGCC 1 cut(s) 181
Bso31I GGTCTC 1 cut(s) 527
BsoBI CYCGRG 1 cut(s) 286
Bsp143I GATC 1 cut(s) 97
BspANI GGCC 1 cut(s) 181
BspCNI CTCAG 2 cut(s) 57, 253
BspLI GGNNCC 2 cut(s) 157, 317
BspT107I GGYRCC 1 cut(s) 155
BspTNI GGTCTC 1 cut(s) 527
BsrDI GCAATG 1 cut(s) 474
BssECI CCNNGG 2 cut(s) 189, 480
BssMI GATC 1 cut(s) 97
BssNI GRCGYC 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 480
Bst4CI ACNGT 2 cut(s) 311, 446
Bst6I CTCTTC 1 cut(s) 498
BstACI GRCGYC 1 cut(s) 204
BstDEI CTNAG 3 cut(s) 46, 65, 261
BstF5I GGATG 4 cut(s) 271, 439, 500, 523
BstKTI GATC 1 cut(s) 100
BstMAI GTCTC 2 cut(s) 420, 527
BstMBI GATC 1 cut(s) 97
BstMWI GCNNNNNNNGC 3 cut(s) 203, 257, 266
BstSCI CCNGG 1 cut(s) 188
BstV2I GAAGAC 1 cut(s) 474
BstX2I RGATCY 1 cut(s) 97
BstYI RGATCY 1 cut(s) 97
BsuRI GGCC 1 cut(s) 181
BtgZI GCGATG 1 cut(s) 420
BtsCI GGATG 4 cut(s) 271, 439, 500, 523
Cfr13I GGNCC 1 cut(s) 316
CseI GACGC 2 cut(s) 212, 266
Csp6I GTAC 1 cut(s) 17
CviAII CATG 3 cut(s) 217, 320, 430
CviJI RGCY 7 cut(s) 50, 69, 181, 197, 251, 375, 541
CviKI_1 RGCY 7 cut(s) 50, 69, 181, 197, 251, 375, 541
CviQI GTAC 1 cut(s) 17
DdeI CTNAG 3 cut(s) 46, 65, 261
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 498
EarI CTCTTC 1 cut(s) 498
Eco130I CCWWGG 1 cut(s) 480
Eco31I GGTCTC 1 cut(s) 527
Eco47I GGWCC 1 cut(s) 316
Eco88I CYCGRG 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 480
EcoT22I ATGCAT 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 480
FaeI CATG 3 cut(s) 220, 323, 433
FaiI YATR 6 cut(s) 209, 218, 231, 321, 431, 441
FaqI GGGAC 1 cut(s) 329
FatI CATG 3 cut(s) 216, 319, 429
FokI GGATG 4 cut(s) 278, 446, 507, 530
FspBI CTAG 1 cut(s) 236
HaeIII GGCC 1 cut(s) 181
HapII CCGG 1 cut(s) 189
HgaI GACGC 2 cut(s) 212, 266
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 3 cut(s) 220, 323, 433
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HinfI GANTC 1 cut(s) 462
HpaI GTTAAC 1 cut(s) 487
HpaII CCGG 1 cut(s) 189
HphI GGTGA 1 cut(s) 353
Hpy166II GTNNAC 1 cut(s) 487
Hpy188I TCNGA 1 cut(s) 66
Hpy188III TCNNGA 1 cut(s) 90
Hpy8I GTNNAC 1 cut(s) 487
Hpy99I CGWCG 2 cut(s) 96, 395
HpyAV CCTTC 1 cut(s) 365
HpyCH4III ACNGT 2 cut(s) 311, 446
HpyCH4V TGCA 2 cut(s) 220, 269
HpyF10VI GCNNNNNNNGC 3 cut(s) 203, 257, 266
HpyF3I CTNAG 3 cut(s) 46, 65, 261
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 3 cut(s) 220, 323, 433
KspAI GTTAAC 1 cut(s) 487
Kzo9I GATC 1 cut(s) 97
LmnI GCTCC 1 cut(s) 248
LpnPI CCDG 2 cut(s) 163, 202
LweI GCATC 2 cut(s) 229, 256
MaeI CTAG 1 cut(s) 236
MaeIII GTNAC 1 cut(s) 302
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 9 cut(s) 92, 177, 251, 254, 362, 392, 395, 479, 515
MflI RGATCY 1 cut(s) 97
MluCI AATT 2 cut(s) 104, 448
MmeI TCCRAC 1 cut(s) 148
MnlI CCTC 6 cut(s) 97, 129, 256, 289, 492, 501
Mph1103I ATGCAT 1 cut(s) 222
MseI TTAA 3 cut(s) 141, 486, 512
MslI CAYNNNNRTG 2 cut(s) 228, 324
MspI CCGG 1 cut(s) 189
MspR9I CCNGG 1 cut(s) 190
MwoI GCNNNNNNNGC 3 cut(s) 203, 257, 266
NciI CCSGG 1 cut(s) 190
NdeII GATC 1 cut(s) 97
NlaIII CATG 3 cut(s) 220, 323, 433
NlaIV GGNNCC 2 cut(s) 157, 317
NmuCI GTSAC 1 cut(s) 302
NsiI ATGCAT 1 cut(s) 222
PaeR7I CTCGAG 1 cut(s) 286
PfeI GAWTC 1 cut(s) 462
PspN4I GGNNCC 2 cut(s) 157, 317
PspPI GGNCC 1 cut(s) 316
PspXI VCTCGAGB 1 cut(s) 286
PsuI RGATCY 1 cut(s) 97
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
RseI CAYNNNNRTG 2 cut(s) 228, 324
SaqAI TTAA 3 cut(s) 141, 486, 512
Sau3AI GATC 1 cut(s) 97
Sau96I GGNCC 1 cut(s) 316
ScrFI CCNGG 1 cut(s) 190
SfaNI GCATC 2 cut(s) 229, 256
Sfr274I CTCGAG 1 cut(s) 286
SinI GGWCC 1 cut(s) 316
SlaI CTCGAG 1 cut(s) 286
SmiMI CAYNNNNRTG 2 cut(s) 228, 324
SmlI CTYRAG 1 cut(s) 286
SmoI CTYRAG 1 cut(s) 286
Sse9I AATT 2 cut(s) 104, 448
SspMI CTAG 1 cut(s) 236
StyD4I CCNGG 1 cut(s) 188
StyI CCWWGG 1 cut(s) 480
TaaI ACNGT 2 cut(s) 311, 446
TaqI TCGA 2 cut(s) 287, 465
TasI AATT 2 cut(s) 104, 448
TfiI GAWTC 1 cut(s) 462
Tru1I TTAA 3 cut(s) 141, 486, 512
Tru9I TTAA 3 cut(s) 141, 486, 512
TseFI GTSAC 1 cut(s) 302
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 4 cut(s) 205, 246, 450, 463
VpaK11BI GGWCC 1 cut(s) 316
XhoI CTCGAG 1 cut(s) 286
XspI CTAG 1 cut(s) 236
Zsp2I ATGCAT 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.