Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0017949

Physical Location & Seq

Genomic Coordinates Reverse (-)

49858048 .. 49858611

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00255560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAGGCTCGTTTGGGTACCTAGGCCTGTTTTTATATTGCTGTTTCTAGCTGTTGTTCTTGTCCTGAGCTCTTTGTTTCAGTCAATTTCGAAACAAAAAAATCTTCAATTCTCATCAAATCCTCTATTCGTGTTTTCGCTCTGCAACATCATAATCTTTGCCATCATTGTTGGAGATCATCGGCCACCTACCGAGGAAGTTGACAGCATCTTACCATTCCTAGCAGGTTCAGCAGAGGATGCAACTTATGATATTGAGGATGATGGTAGCAACAAGCACTGCAATATGGATGGTCATGTTAGTGGCAGTGAGGATGTTGATGATCAAATTGATGAAAGTGGAGAAGAAGATGGAGAATATGATTCTGACGGTTACAATGAAGATGACGACGACAATGGTAGCAATGATGAAATTGGCTGGGAAGACACAGATGAATCTGATGATAACTTGGAGACGAGAGTTGAAAACTTCATTGATAGGGTTTACAAGGGATGGCGAGAAGAGAGGATAAGGGATAGTCTATGCAGTCCCCTGCAATTTTTTGGTTACATCAATCCCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

187

Amino Acids

21.2

Weight (kDa)

4.05

Isoelectric Point (pI)

49.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62935
fragaria_vesca	FvH4_5g00851
malus_domestica	MD00G1083200.v1.1
prunus_persica	Prupe.5G081400_v2.0.a1
pyrus_communis	pycom04g06910 pycom06g06410
rosa_laevigata	RLG00000003695
rosa_roxburghii	Rroxscaffold_3G00255560
rosa_rugosa	Rorug07G0061700
rosa_samantha	Rh7DG193200
rosa_wichuraiana	Rw7G016460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	562
Acc36I	ACCTGC	1 cut(s)	215
Acc65I	GGTACC	1 cut(s)	16
AccB1I	GGYRCC	1 cut(s)	16
AcoI	YGGCCR	1 cut(s)	182
AfaI	GTAC	1 cut(s)	18
AgsI	TTSAA	2 cut(s)	107, 464
AluBI	AGCT	2 cut(s)	50, 69
AluI	AGCT	2 cut(s)	50, 69
Alw21I	GWGCWC	1 cut(s)	71
Alw26I	GTCTC	1 cut(s)	446
AoxI	GGCC	2 cut(s)	23, 182
Asp718I	GGTACC	1 cut(s)	16
AspA2I	CCTAGG	1 cut(s)	20
AsuII	TTCGAA	1 cut(s)	89
AvrII	CCTAGG	1 cut(s)	20
BanI	GGYRCC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	429
Bbv12I	GWGCWC	1 cut(s)	71
BccI	CCATC	5 cut(s)	170, 257, 284, 344, 486
BclI	TGATCA	1 cut(s)	322
BcoDI	GTCTC	1 cut(s)	446
BfaI	CTAG	3 cut(s)	21, 47, 221
BfuAI	ACCTGC	1 cut(s)	215
BlnI	CCTAGG	1 cut(s)	20
BmiI	GGNNCC	1 cut(s)	18
BmsI	GCATC	2 cut(s)	216, 229
BpiI	GAAGAC	1 cut(s)	429
Bpu10I	CCTNAGC	1 cut(s)	65
Bpu14I	TTCGAA	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	20, 192
Bse3DI	GCAATG	1 cut(s)	409
BseDI	CCNNGG	2 cut(s)	20, 192
BseGI	GGATG	5 cut(s)	244, 265, 295, 319, 497
BseMI	GCAATG	1 cut(s)	409
BseMII	CTCAG	1 cut(s)	56
BseYI	CCCAGC	1 cut(s)	417
BshFI	GGCC	2 cut(s)	25, 184
BshNI	GGYRCC	1 cut(s)	16
BsiHKAI	GWGCWC	1 cut(s)	71
BslFI	GGGAC	1 cut(s)	513
BsmAI	GTCTC	1 cut(s)	446
BsmBI	CGTCTC	1 cut(s)	446
BsmFI	GGGAC	1 cut(s)	513
BsnI	GGCC	2 cut(s)	25, 184
Bsp119I	TTCGAA	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp143I	GATC	2 cut(s)	175, 322
BspANI	GGCC	2 cut(s)	25, 184
BspCNI	CTCAG	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	18
BspMI	ACCTGC	1 cut(s)	215
BspT104I	TTCGAA	1 cut(s)	89
BspT107I	GGYRCC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	409
BssECI	CCNNGG	2 cut(s)	20, 192
BssMI	GATC	2 cut(s)	175, 322
BssT1I	CCWWGG	1 cut(s)	20
Bst4CI	ACNGT	1 cut(s)	371
Bst6I	CTCTTC	1 cut(s)	495
BstAPI	GCANNNNNTGC	1 cut(s)	239
BstBI	TTCGAA	1 cut(s)	89
BstDEI	CTNAG	1 cut(s)	65
BstF5I	GGATG	5 cut(s)	244, 265, 295, 319, 497
BstKTI	GATC	2 cut(s)	178, 325
BstMAI	GTCTC	1 cut(s)	446
BstMBI	GATC	2 cut(s)	175, 322
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 239
BstV2I	GAAGAC	1 cut(s)	429
BsuRI	GGCC	2 cut(s)	25, 184
BtsCI	GGATG	5 cut(s)	244, 265, 295, 319, 497
BtsI	GCAGTG	2 cut(s)	277, 313
BtsIMutI	CAGTG	2 cut(s)	277, 313
BveI	ACCTGC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	17
CviAII	CATG	1 cut(s)	296
CviJI	RGCY	6 cut(s)	7, 25, 50, 69, 184, 417
CviKI_1	RGCY	6 cut(s)	7, 25, 50, 69, 184, 417
CviQI	GTAC	1 cut(s)	17
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	2 cut(s)	177, 324
DpnII	GATC	2 cut(s)	175, 322
EaeI	YGGCCR	1 cut(s)	182
Eam1104I	CTCTTC	1 cut(s)	495
EarI	CTCTTC	1 cut(s)	495
Ecl136II	GAGCTC	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	20
Eco147I	AGGCCT	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	71
Eco53kI	GAGCTC	1 cut(s)	69
EcoICRI	GAGCTC	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	20
EcoT38I	GRGCYC	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	20
Esp3I	CGTCTC	1 cut(s)	446
FaeI	CATG	1 cut(s)	299
FaiI	YATR	8 cut(s)	35, 152, 249, 287, 297, 360, 523, 562
FaqI	GGGAC	1 cut(s)	513
FatI	CATG	1 cut(s)	295
FbaI	TGATCA	1 cut(s)	322
FokI	GGATG	5 cut(s)	251, 272, 302, 326, 504
FriOI	GRGCYC	1 cut(s)	71
FspBI	CTAG	3 cut(s)	21, 47, 221
GsaI	CCCAGC	1 cut(s)	421
HaeIII	GGCC	2 cut(s)	25, 184
Hin1II	CATG	1 cut(s)	299
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	2 cut(s)	362, 434
Hpy166II	GTNNAC	2 cut(s)	202, 484
Hpy188I	TCNGA	2 cut(s)	367, 439
Hpy188III	TCNNGA	1 cut(s)	64
Hpy8I	GTNNAC	2 cut(s)	202, 484
Hpy99I	CGWCG	1 cut(s)	392
HpyCH4III	ACNGT	1 cut(s)	371
HpyCH4V	TGCA	5 cut(s)	144, 242, 282, 525, 535
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 239
HpyF3I	CTNAG	1 cut(s)	65
Hsp92II	CATG	1 cut(s)	299
KpnI	GGTACC	1 cut(s)	20
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	2 cut(s)	175, 322
LpnPI	CCDG	5 cut(s)	39, 77, 210, 403, 545
LweI	GCATC	2 cut(s)	216, 229
MaeI	CTAG	3 cut(s)	21, 47, 221
MaeIII	GTNAC	2 cut(s)	371, 545
MalI	GATC	2 cut(s)	177, 324
MboI	GATC	2 cut(s)	175, 322
MboII	GAAGA	6 cut(s)	95, 356, 359, 392, 434, 512
MhlI	GDGCHC	1 cut(s)	71
MluCI	AATT	5 cut(s)	84, 107, 327, 411, 536
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	6 cut(s)	132, 187, 229, 250, 304, 498
MslI	CAYNNNNRTG	1 cut(s)	300
MwoI	GCNNNNNNNGC	2 cut(s)	230, 239
NdeII	GATC	2 cut(s)	175, 322
NlaIII	CATG	1 cut(s)	299
NlaIV	GGNNCC	1 cut(s)	18
NspV	TTCGAA	1 cut(s)	89
PceI	AGGCCT	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	362, 434
PsiI	TTATAA	1 cut(s)	562
Psp124BI	GAGCTC	1 cut(s)	71
PspFI	CCCAGC	1 cut(s)	417
PspN4I	GGNNCC	1 cut(s)	18
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	300
SacI	GAGCTC	1 cut(s)	71
Sau3AI	GATC	2 cut(s)	175, 322
SduI	GDGCHC	1 cut(s)	71
SetI	ASST	5 cut(s)	22, 52, 71, 190, 229
SfaNI	GCATC	2 cut(s)	216, 229
SfuI	TTCGAA	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	300
Sse9I	AATT	5 cut(s)	84, 107, 327, 411, 536
SseBI	AGGCCT	1 cut(s)	25
SspMI	CTAG	3 cut(s)	21, 47, 221
SstI	GAGCTC	1 cut(s)	71
StuI	AGGCCT	1 cut(s)	25
StyI	CCWWGG	1 cut(s)	20
TaaI	ACNGT	1 cut(s)	371
TaqI	TCGA	1 cut(s)	89
TasI	AATT	5 cut(s)	84, 107, 327, 411, 536
TfiI	GAWTC	2 cut(s)	362, 434
TscAI	CASTG	2 cut(s)	284, 313
TspDTI	ATGAA	5 cut(s)	348, 393, 423, 447, 460
TspRI	CASTG	2 cut(s)	284, 313
XmaJI	CCTAGG	1 cut(s)	20
XspI	CTAG	3 cut(s)	21, 47, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.