pycom06g06410

Phosphopantothenoylcysteine decarboxylase subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0017949
Physical Location & Seq
Reverse (-)
10072702 .. 10073184
483 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g06410.1

Sequence Viewer

Length: 483 bp
ATGAGGTTTGCTGGGGTACCAACTCCTATTTTTCTACTGCTGTTTCTAGCTTCTCTTCTTGTTCTGAGCTATTTTCTACAATCGATCTCGCGGCGCAATCTTCACTTCTCTTCCAATCCTCTGTTTGTGTTTTCGCTGTTAAACATGATAAGTGTTGCGATCATTGTTGGAAACCATAGGCGCCATCTTCTGTGGAAGCTGACCACATCATATCTTTCGTGTATCATTTGTATGAACTGGAAGAAGACGGAGCTGATGATGCTGAGGATACAAAGAGTGATAAAACACTTGAGTTTGGAGGGTTATGACAACTGTAGGGACCATGTTGATGACGACAATGGTGGTGAAAGTGAAAGTGACGATCATTTTGATTCAGATGCTTACAATGAAGATGATGAGGACAATGGTAGCGAAGGCGAGATTGGATGGGGAGACATGGATGAATATGACTATAATTTGGAGAAACGAATCGAGCTTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

18.61

Weight (kDa)

4.83

Isoelectric Point (pI)

44.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017949)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62935
fragaria_vesca FvH4_5g00851
malus_domestica MD00G1083200.v1.1
prunus_persica Prupe.5G081400_v2.0.a1
pyrus_communis pycom04g06910 pycom06g06410
rosa_laevigata RLG00000003695
rosa_roxburghii Rroxscaffold_3G00255560
rosa_rugosa Rorug07G0061700
rosa_samantha Rh7DG193200
rosa_wichuraiana Rw7G016460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 16
AccB1I GGYRCC 2 cut(s) 16, 180
AccII CGCG 1 cut(s) 91
AciI CCGC 1 cut(s) 91
AcyI GRCGYC 1 cut(s) 181
AfaI GTAC 1 cut(s) 18
AjuI GAANNNNNNNTTGG 2 cut(s) 405, 437
AluBI AGCT 5 cut(s) 50, 69, 199, 253, 475
AluI AGCT 5 cut(s) 50, 69, 199, 253, 475
Alw26I GTCTC 1 cut(s) 426
ArsI GACNNNNNNTTYG 2 cut(s) 350, 382
Asp718I GGTACC 1 cut(s) 16
AspLEI GCGC 2 cut(s) 96, 183
AspS9I GGNCC 1 cut(s) 319
AsuHPI GGTGA 1 cut(s) 356
AvaII GGWCC 1 cut(s) 319
BanI GGYRCC 2 cut(s) 16, 180
BbsI GAAGAC 1 cut(s) 251
BbvCI CCTCAGC 1 cut(s) 263
BccI CCATC 2 cut(s) 192, 420
BciVI GTATCC 1 cut(s) 261
BcoDI GTCTC 1 cut(s) 426
BfaI CTAG 1 cut(s) 47
BfmI CTRYAG 1 cut(s) 313
BfoI RGCGCY 1 cut(s) 184
BfuI GTATCC 1 cut(s) 261
BisI GCNGC 1 cut(s) 92
BlsI GCNGC 1 cut(s) 93
Bme18I GGWCC 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 319
BmiI GGNNCC 3 cut(s) 18, 182, 320
BmsI GCATC 2 cut(s) 249, 367
BpiI GAAGAC 1 cut(s) 251
Bpu10I CCTNAGC 1 cut(s) 263
BpuEI CTTGAG 1 cut(s) 310
Bsa29I ATCGAT 1 cut(s) 83
BsaHI GRCGYC 1 cut(s) 181
Bse1I ACTGG 1 cut(s) 242
BseCI ATCGAT 1 cut(s) 83
BseGI GGATG 2 cut(s) 431, 445
BseMII CTCAG 2 cut(s) 56, 254
BseNI ACTGG 1 cut(s) 242
BseYI CCCAGC 1 cut(s) 11
Bsh1236I CGCG 1 cut(s) 91
BshNI GGYRCC 2 cut(s) 16, 180
BshVI ATCGAT 1 cut(s) 83
BslFI GGGAC 1 cut(s) 332
BsmAI GTCTC 1 cut(s) 426
BsmFI GGGAC 1 cut(s) 332
Bsp143I GATC 3 cut(s) 84, 159, 361
BspACI CCGC 1 cut(s) 91
BspCNI CTCAG 2 cut(s) 57, 255
BspDI ATCGAT 1 cut(s) 83
BspFNI CGCG 1 cut(s) 91
BspLI GGNNCC 3 cut(s) 18, 182, 320
BspT107I GGYRCC 2 cut(s) 16, 180
BsrI ACTGG 1 cut(s) 242
BssMI GATC 3 cut(s) 84, 159, 361
BssNI GRCGYC 1 cut(s) 181
Bst4CI ACNGT 1 cut(s) 314
Bst6I CTCTTC 2 cut(s) 60, 115
BstACI GRCGYC 1 cut(s) 181
BstDEI CTNAG 2 cut(s) 65, 263
BstF5I GGATG 2 cut(s) 431, 445
BstFNI CGCG 1 cut(s) 91
BstH2I RGCGCY 1 cut(s) 184
BstHHI GCGC 2 cut(s) 96, 183
BstKTI GATC 3 cut(s) 87, 162, 364
BstMAI GTCTC 1 cut(s) 426
BstMBI GATC 3 cut(s) 84, 159, 361
BstMWI GCNNNNNNNGC 1 cut(s) 259
BstSFI CTRYAG 1 cut(s) 313
BstUI CGCG 1 cut(s) 91
BstV2I GAAGAC 1 cut(s) 251
Bsu15I ATCGAT 1 cut(s) 83
BsuI GTATCC 1 cut(s) 261
BsuTUI ATCGAT 1 cut(s) 83
BtsCI GGATG 2 cut(s) 431, 445
CfoI GCGC 2 cut(s) 96, 183
Cfr13I GGNCC 1 cut(s) 319
ClaI ATCGAT 1 cut(s) 83
Csp6I GTAC 1 cut(s) 17
CviAII CATG 3 cut(s) 145, 323, 436
CviJI RGCY 5 cut(s) 50, 69, 199, 253, 475
CviKI_1 RGCY 5 cut(s) 50, 69, 199, 253, 475
CviQI GTAC 1 cut(s) 17
DdeI CTNAG 2 cut(s) 65, 263
DinI GGCGCC 1 cut(s) 182
DpnI GATC 3 cut(s) 86, 161, 363
DpnII GATC 3 cut(s) 84, 159, 361
Eam1104I CTCTTC 2 cut(s) 60, 115
EarI CTCTTC 2 cut(s) 60, 115
Eco47I GGWCC 1 cut(s) 319
EgeI GGCGCC 1 cut(s) 182
EheI GGCGCC 1 cut(s) 182
FaeI CATG 3 cut(s) 148, 326, 439
FaiI YATR 9 cut(s) 146, 177, 211, 233, 306, 324, 437, 447, 453
FaqI GGGAC 1 cut(s) 332
FatI CATG 3 cut(s) 144, 322, 435
Fnu4HI GCNGC 1 cut(s) 92
FokI GGATG 2 cut(s) 438, 452
Fsp4HI GCNGC 1 cut(s) 92
FspBI CTAG 1 cut(s) 47
GlaI GCGC 2 cut(s) 95, 182
GluI GCNGC 1 cut(s) 92
GsaI CCCAGC 1 cut(s) 15
HaeII RGCGCY 1 cut(s) 184
HhaI GCGC 2 cut(s) 96, 183
Hin1I GRCGYC 1 cut(s) 181
Hin1II CATG 3 cut(s) 148, 326, 439
Hin6I GCGC 2 cut(s) 94, 181
HinP1I GCGC 2 cut(s) 94, 181
HinfI GANTC 2 cut(s) 371, 468
HphI GGTGA 1 cut(s) 356
Hpy188I TCNGA 2 cut(s) 66, 376
HpyAV CCTTC 1 cut(s) 407
HpyCH4III ACNGT 1 cut(s) 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 259
HpyF3I CTNAG 2 cut(s) 65, 263
Hsp92I GRCGYC 1 cut(s) 181
Hsp92II CATG 3 cut(s) 148, 326, 439
HspAI GCGC 2 cut(s) 94, 181
KasI GGCGCC 1 cut(s) 180
KpnI GGTACC 1 cut(s) 20
Kzo9I GATC 3 cut(s) 84, 159, 361
LmnI GCTCC 1 cut(s) 250
LpnPI CCDG 1 cut(s) 223
LweI GCATC 2 cut(s) 249, 367
MaeI CTAG 1 cut(s) 47
MaeIII GTNAC 1 cut(s) 356
MalI GATC 3 cut(s) 86, 161, 363
MboI GATC 3 cut(s) 84, 159, 361
MboII GAAGA 7 cut(s) 47, 92, 102, 179, 253, 256, 401
MluCI AATT 1 cut(s) 454
Mly113I GGCGCC 1 cut(s) 181
MmeI TCCRAC 1 cut(s) 148
MnlI CCTC 4 cut(s) 129, 258, 292, 391
MseI TTAA 1 cut(s) 140
MslI CAYNNNNRTG 2 cut(s) 230, 327
MvnI CGCG 1 cut(s) 91
MwoI GCNNNNNNNGC 1 cut(s) 259
NarI GGCGCC 1 cut(s) 181
NdeII GATC 3 cut(s) 84, 159, 361
NlaIII CATG 3 cut(s) 148, 326, 439
NlaIV GGNNCC 3 cut(s) 18, 182, 320
NmuCI GTSAC 1 cut(s) 356
PfeI GAWTC 2 cut(s) 371, 468
PkrI GCNGC 1 cut(s) 93
PluTI GGCGCC 1 cut(s) 184
PspFI CCCAGC 1 cut(s) 11
PspN4I GGNNCC 3 cut(s) 18, 182, 320
PspPI GGNCC 1 cut(s) 319
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
RseI CAYNNNNRTG 2 cut(s) 230, 327
SaqAI TTAA 1 cut(s) 140
SatI GCNGC 1 cut(s) 92
Sau3AI GATC 3 cut(s) 84, 159, 361
Sau96I GGNCC 1 cut(s) 319
SetI ASST 6 cut(s) 8, 52, 71, 201, 255, 477
SfaNI GCATC 2 cut(s) 249, 367
SfcI CTRYAG 1 cut(s) 313
SfoI GGCGCC 1 cut(s) 182
SinI GGWCC 1 cut(s) 319
SmiMI CAYNNNNRTG 2 cut(s) 230, 327
SmlI CTYRAG 1 cut(s) 289
SmoI CTYRAG 1 cut(s) 289
Sse9I AATT 1 cut(s) 454
SsiI CCGC 1 cut(s) 91
SspDI GGCGCC 1 cut(s) 180
SspMI CTAG 1 cut(s) 47
TaaI ACNGT 1 cut(s) 314
TaqI TCGA 2 cut(s) 83, 471
TasI AATT 1 cut(s) 454
TauI GCSGC 1 cut(s) 94
TfiI GAWTC 2 cut(s) 371, 468
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TseFI GTSAC 1 cut(s) 356
Tsp45I GTSAC 1 cut(s) 356
TspDTI ATGAA 4 cut(s) 248, 402, 456, 467
TspGWI ACGGA 1 cut(s) 263
VpaK11BI GGWCC 1 cut(s) 319
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.