Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015425

Physical Location & Seq

Genomic Coordinates Forward (+)

23337167 .. 23340692

Gene Structure 3526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G62990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGCAAGAAGCGGCACTAGGTATGATGGGAGCCACCGTAGGCGGAGACGGAGACACCGCGGTCGTGGCGGAGCAGAATAGACAGTTGAAAGGTGAGATAGCGACACATCCGATGTATGAGCAATTATTAGCCGCACACGTGGCGTGTTTAAGAGTAGCTACTCCAATAGATCAACTTCCGATCATTGAAGCTCAGCTTTCTCAATCTCATCATCTTCTCCGTTCTTACGCTTCCACGGCCGTTGGATACCATCATGATCGTCACGAGCTCGATAATTTCTTGGCACAATATGTAATGGTGTTGTGTAGCTTCAAAGAACAGCTGCAACAGCACGTGAGGGTTCATGCCGTCGAAGCTGTTATGGCTTGCCGTGAAATTGAGAACAACCTTCATTCTCTTACAGGAGCAACTTTAGGAGAAGGGTCGGGTGCGACTATGTCGGAGGATGAGGATGATCTTCCGATGGATTTCTCGTCAGATAATTCCGGCGTTGATTTTAGCGGCGGCCACGATATGACGGGATTTGGTCCGTTGCTACCGACTGAATCGGAAAGATCCCTTATGGAAAGAGTCAGACAAGAACTCAAACTAGAACTCAAACAGGGTTTTAAATCGAGAATCGAAGATGTAAGAGAAGAGATAATGAGGAAGAGAAGGGCTGGGAAATTGCCAGGAGACACAACTACTGTCTTGAAAAATTGGTGGCAACAACATTGCAAATGGCCTTACCCTACGGAAGATGACAAGGCAAAATTGGTGGAGGAGACAGGATTGCAGTTGAAGCAAATCAACAATTGGTTCATTAACCAACGCAAGAGGAATTGGCACAACAACTCTCACTCCCTCACTTCCTTGAAGTCCAAGCGCAAACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010087 GO:0010089 GO:0010191 GO:0010192 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903338 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

291

Amino Acids

32.91

Weight (kDa)

6.1

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	29 - 70	3.8e-18	KNOX1 domain
KNOX2	PF03791	84 - 134	2.6e-17	KNOX2 domain
Homeobox_KN	PF05920	234 - 273	1e-19	Homeobox KN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62990
fragaria_vesca	FvH4_5g01260
malus_domestica	MD04G1069700.v1.1 MD06G1071100.v1.1
prunus_persica	Prupe.5G088100_v2.0.a1 Prupe.5G088100_v2.0.a1
pyrus_communis	pycom04g06340
rosa_chinensis	RchiOBHm_Chr7g0199751
rosa_laevigata	RLG00000003773
rosa_multiflora	Rmu_sc0002748.1_g000022
rosa_roxburghii	Rroxscaffold_3G00256460
rosa_rugosa	Rorug07G0056000 Rorug07G0056100
rosa_samantha	Rh7AG181500 Rh7BG184300
rosa_wichuraiana	Rw7G015910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	59
AccII	CGCG	1 cut(s)	59
AciI	CCGC	8 cut(s)	11, 42, 57, 59, 68, 132, 501, 504
AclWI	GGATC	1 cut(s)	549
AcoI	YGGCCR	2 cut(s)	237, 505
AcvI	CACGTG	2 cut(s)	139, 334
AflIII	ACRYGT	1 cut(s)	136
AgsI	TTSAA	6 cut(s)	88, 188, 313, 694, 781, 856
AjnI	CCWGG	1 cut(s)	670
AluBI	AGCT	7 cut(s)	158, 191, 196, 268, 309, 322, 356
AluI	AGCT	7 cut(s)	158, 191, 196, 268, 309, 322, 356
Alw21I	GWGCWC	1 cut(s)	270
Alw26I	GTCTC	4 cut(s)	39, 45, 669, 758
AlwI	GGATC	1 cut(s)	549
AoxI	GGCC	3 cut(s)	237, 505, 722
ApeKI	GCWGC	1 cut(s)	322
AspLEI	GCGC	1 cut(s)	867
AspS9I	GGNCC	1 cut(s)	527
AsuHPI	GGTGA	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	527
BanII	GRGCYC	1 cut(s)	270
BauI	CACGAG	1 cut(s)	263
BbrPI	CACGTG	2 cut(s)	139, 334
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	1 cut(s)	309
BccI	CCATC	3 cut(s)	19, 258, 457
BceAI	ACGGC	4 cut(s)	224, 252, 332, 354
BciT130I	CCWGG	1 cut(s)	672
BciVI	GTATCC	1 cut(s)	239
BcoDI	GTCTC	4 cut(s)	39, 45, 669, 758
BfaI	CTAG	2 cut(s)	17, 590
BfuI	GTATCC	1 cut(s)	239
BisI	GCNGC	5 cut(s)	12, 132, 323, 502, 505
BlpI	GCTNAGC	1 cut(s)	192
BlsI	GCNGC	5 cut(s)	13, 133, 324, 503, 506
Bme1390I	CCNGG	1 cut(s)	672
Bme18I	GGWCC	1 cut(s)	527
BmgT120I	GGNCC	1 cut(s)	527
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	672
Bpu1102I	GCTNAGC	1 cut(s)	192
BsaAI	YACGTR	2 cut(s)	139, 334
BsaJI	CCNNGG	2 cut(s)	57, 234
BsaXI	ACNNNNNCTCC	4 cut(s)	21, 51, 824, 854
Bse3DI	GCAATG	1 cut(s)	712
BseBI	CCWGG	1 cut(s)	672
BseDI	CCNNGG	2 cut(s)	57, 234
BseGI	GGATG	3 cut(s)	106, 451, 457
BseMI	GCAATG	1 cut(s)	712
BseMII	CTCAG	1 cut(s)	206
BseRI	GAGGAG	1 cut(s)	776
BseX3I	CGGCCG	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	309
BseYI	CCCAGC	1 cut(s)	659
Bsh1236I	CGCG	1 cut(s)	59
Bsh1285I	CGRYCG	2 cut(s)	63, 240
BshFI	GGCC	3 cut(s)	239, 507, 724
BsiEI	CGRYCG	2 cut(s)	63, 240
BsiHKAI	GWGCWC	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	486
BsmAI	GTCTC	4 cut(s)	39, 45, 669, 758
BsmBI	CGTCTC	1 cut(s)	39
BsnI	GGCC	3 cut(s)	239, 507, 724
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	5 cut(s)	169, 180, 256, 454, 554
Bsp1720I	GCTNAGC	1 cut(s)	192
BspACI	CCGC	8 cut(s)	11, 42, 57, 59, 68, 132, 501, 504
BspANI	GGCC	3 cut(s)	239, 507, 724
BspCNI	CTCAG	1 cut(s)	205
BspFNI	CGCG	1 cut(s)	59
BspHI	TCATGA	1 cut(s)	253
BspLI	GGNNCC	1 cut(s)	31
BspPI	GGATC	1 cut(s)	549
BsrDI	GCAATG	1 cut(s)	712
BssECI	CCNNGG	2 cut(s)	57, 234
BssMI	GATC	5 cut(s)	169, 180, 256, 454, 554
BssSI	CACGAG	1 cut(s)	263
Bst2BI	CACGAG	1 cut(s)	263
Bst2UI	CCWGG	1 cut(s)	672
Bst4CI	ACNGT	3 cut(s)	37, 84, 688
Bst6I	CTCTTC	2 cut(s)	630, 644
BstBAI	YACGTR	2 cut(s)	139, 334
BstC8I	GCNNGC	1 cut(s)	367
BstDEI	CTNAG	1 cut(s)	192
BstDSI	CCRYGG	2 cut(s)	57, 234
BstF5I	GGATG	3 cut(s)	106, 451, 457
BstFNI	CGCG	1 cut(s)	59
BstHHI	GCGC	1 cut(s)	867
BstKTI	GATC	5 cut(s)	172, 183, 259, 457, 557
BstMAI	GTCTC	4 cut(s)	39, 45, 669, 758
BstMBI	GATC	5 cut(s)	169, 180, 256, 454, 554
BstMCI	CGRYCG	2 cut(s)	63, 240
BstMWI	GCNNNNNNNGC	7 cut(s)	65, 140, 236, 328, 353, 362, 781
BstNI	CCWGG	1 cut(s)	672
BstSCI	CCNGG	1 cut(s)	670
BstUI	CGCG	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	309
BstX2I	RGATCY	1 cut(s)	554
BstYI	RGATCY	1 cut(s)	554
BstZI	CGGCCG	1 cut(s)	237
BsuI	GTATCC	1 cut(s)	239
BsuRI	GGCC	3 cut(s)	239, 507, 724
BtgI	CCRYGG	2 cut(s)	57, 234
BtsCI	GGATG	3 cut(s)	106, 451, 457
Cac8I	GCNNGC	1 cut(s)	367
CciI	TCATGA	1 cut(s)	253
CfoI	GCGC	1 cut(s)	867
Cfr13I	GGNCC	1 cut(s)	527
Cfr42I	CCGCGG	1 cut(s)	60
CspCI	CAANNNNNGTGG	4 cut(s)	223, 258, 738, 773
CviAII	CATG	2 cut(s)	254, 344
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	5 cut(s)	171, 182, 258, 456, 556
DpnII	GATC	5 cut(s)	169, 180, 256, 454, 554
DraI	TTTAAA	1 cut(s)	610
DrdI	GACNNNNNNGTC	1 cut(s)	59
DseDI	GACNNNNNNGTC	1 cut(s)	59
EaeI	YGGCCR	2 cut(s)	237, 505
EagI	CGGCCG	1 cut(s)	237
Eam1104I	CTCTTC	2 cut(s)	630, 644
EarI	CTCTTC	2 cut(s)	630, 644
EciI	GGCGGA	2 cut(s)	57, 83
Ecl136II	GAGCTC	1 cut(s)	268
EclXI	CGGCCG	1 cut(s)	237
Eco24I	GRGCYC	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	527
Eco52I	CGGCCG	1 cut(s)	237
Eco53kI	GAGCTC	1 cut(s)	268
Eco72I	CACGTG	2 cut(s)	139, 334
EcoICRI	GAGCTC	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	670
EcoT38I	GRGCYC	1 cut(s)	270
Esp3I	CGTCTC	1 cut(s)	39
FaeI	CATG	2 cut(s)	257, 347
FaiI	YATR	9 cut(s)	23, 117, 255, 291, 345, 362, 437, 515, 563
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FatI	CATG	2 cut(s)	253, 343
Fnu4HI	GCNGC	5 cut(s)	12, 132, 323, 502, 505
FokI	GGATG	3 cut(s)	93, 458, 464
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	5 cut(s)	12, 132, 323, 502, 505
FspBI	CTAG	2 cut(s)	17, 590
GlaI	GCGC	1 cut(s)	866
GluI	GCNGC	5 cut(s)	12, 132, 323, 502, 505
GsaI	CCCAGC	1 cut(s)	663
HaeIII	GGCC	3 cut(s)	239, 507, 724
HapII	CCGG	1 cut(s)	486
HhaI	GCGC	1 cut(s)	867
Hin1II	CATG	2 cut(s)	257, 347
Hin6I	GCGC	1 cut(s)	865
HinP1I	GCGC	1 cut(s)	865
HinfI	GANTC	3 cut(s)	545, 570, 618
HpaII	CCGG	1 cut(s)	486
HphI	GGTGA	1 cut(s)	104
Hpy188I	TCNGA	7 cut(s)	111, 180, 442, 462, 478, 550, 575
Hpy188III	TCNNGA	4 cut(s)	254, 263, 615, 691
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	3 cut(s)	398, 413, 648
HpyCH4III	ACNGT	3 cut(s)	37, 84, 688
HpyCH4IV	ACGT	2 cut(s)	138, 333
HpyCH4V	TGCA	4 cut(s)	4, 325, 717, 775
HpyF10VI	GCNNNNNNNGC	7 cut(s)	65, 140, 236, 328, 353, 362, 781
HpyF3I	CTNAG	1 cut(s)	192
HpySE526I	ACGT	2 cut(s)	138, 333
Hsp92II	CATG	2 cut(s)	257, 347
HspAI	GCGC	1 cut(s)	865
KspI	CCGCGG	1 cut(s)	60
Kzo9I	GATC	5 cut(s)	169, 180, 256, 454, 554
LmnI	GCTCC	3 cut(s)	29, 70, 404
LpnPI	CCDG	7 cut(s)	387, 499, 587, 645, 657, 684, 753
Lsp1109I	GCAGC	1 cut(s)	309
MaeI	CTAG	2 cut(s)	17, 590
MaeII	ACGT	2 cut(s)	138, 333
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	5 cut(s)	171, 182, 258, 456, 556
MboI	GATC	5 cut(s)	169, 180, 256, 454, 554
MboII	GAAGA	6 cut(s)	206, 449, 635, 647, 661, 749
MfeI	CAATTG	1 cut(s)	793
MflI	RGATCY	1 cut(s)	554
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	9 cut(s)	122, 274, 375, 481, 665, 697, 752, 793, 820
MlyI	GAGTC	1 cut(s)	579
MmeI	TCCRAC	2 cut(s)	223, 420
MnlI	CCTC	7 cut(s)	330, 436, 442, 639, 754, 810, 854
MseI	TTAA	3 cut(s)	149, 609, 804
MspA1I	CMGCKG	2 cut(s)	59, 322
MspI	CCGG	1 cut(s)	486
MspR9I	CCNGG	1 cut(s)	672
MunI	CAATTG	1 cut(s)	793
MvaI	CCWGG	1 cut(s)	672
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	7 cut(s)	65, 140, 236, 328, 353, 362, 781
NdeII	GATC	5 cut(s)	169, 180, 256, 454, 554
NlaIII	CATG	2 cut(s)	257, 347
NlaIV	GGNNCC	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	260
PagI	TCATGA	1 cut(s)	253
PfeI	GAWTC	2 cut(s)	545, 618
PflFI	GACNNNGTC	1 cut(s)	436
PkrI	GCNGC	5 cut(s)	13, 133, 324, 503, 506
PleI	GAGTC	1 cut(s)	578
PmaCI	CACGTG	2 cut(s)	139, 334
PmlI	CACGTG	2 cut(s)	139, 334
PpsI	GAGTC	1 cut(s)	578
Ppu21I	YACGTR	2 cut(s)	139, 334
Psp124BI	GAGCTC	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	670
PspCI	CACGTG	2 cut(s)	139, 334
PspFI	CCCAGC	1 cut(s)	659
PspGI	CCWGG	1 cut(s)	670
PspN4I	GGNNCC	1 cut(s)	31
PspPI	GGNCC	1 cut(s)	527
PsuI	RGATCY	1 cut(s)	554
PsyI	GACNNNGTC	1 cut(s)	436
PvuII	CAGCTG	1 cut(s)	322
SacI	GAGCTC	1 cut(s)	270
SacII	CCGCGG	1 cut(s)	60
SaqAI	TTAA	3 cut(s)	149, 609, 804
SatI	GCNGC	5 cut(s)	12, 132, 323, 502, 505
Sau3AI	GATC	5 cut(s)	169, 180, 256, 454, 554
Sau96I	GGNCC	1 cut(s)	527
SchI	GAGTC	1 cut(s)	579
ScrFI	CCNGG	1 cut(s)	672
SduI	GDGCHC	1 cut(s)	270
Sfr303I	CCGCGG	1 cut(s)	60
SgrBI	CCGCGG	1 cut(s)	60
SinI	GGWCC	1 cut(s)	527
Sse9I	AATT	9 cut(s)	122, 274, 375, 481, 665, 697, 752, 793, 820
SsiI	CCGC	8 cut(s)	11, 42, 57, 59, 68, 132, 501, 504
SspMI	CTAG	2 cut(s)	17, 590
SstI	GAGCTC	1 cut(s)	270
StyD4I	CCNGG	1 cut(s)	670
TaaI	ACNGT	3 cut(s)	37, 84, 688
TaiI	ACGT	2 cut(s)	141, 336
TaqI	TCGA	4 cut(s)	270, 351, 614, 621
TasI	AATT	9 cut(s)	122, 274, 375, 481, 665, 697, 752, 793, 820
TauI	GCSGC	4 cut(s)	14, 134, 504, 507
TfiI	GAWTC	2 cut(s)	545, 618
Tru1I	TTAA	3 cut(s)	149, 609, 804
Tru9I	TTAA	3 cut(s)	149, 609, 804
TseFI	GTSAC	1 cut(s)	260
TseI	GCWGC	1 cut(s)	322
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	3 cut(s)	332, 380, 790
TspGWI	ACGGA	4 cut(s)	63, 209, 519, 749
Tth111I	GACNNNGTC	1 cut(s)	436
VpaK11BI	GGWCC	1 cut(s)	527
XspI	CTAG	2 cut(s)	17, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.