Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0015425

Physical Location & Seq

Genomic Coordinates Reverse (-)

9546107 .. 9555141

Gene Structure 9035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1069700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGCAAGAATCCGGGTTGGGGATGATGATTGGTGGCGGCGGCGACGGTCATCATGACCAGCATAACCGGCAGCTCAAAGCTGAGATAGCCACGCACCCTCTTTACGAGCAGCTCCTGTCTGCACACGTGTCCTGTCTCAGGGTGGCGACGCCAGAGCGCCAAGAGCTTGACAACTTTTTGGCACAATATCTGATAGTTTTGTGCTCTTTCAAAGAACATCTTCAACAACATGTCAGAGTCCATGCGGTTGAAGCTGTAATGGCCTGCCGTGAAATCGAAAGCAACTTGCAGGCTCTTACTGGAGTGAGTCTGGGCGAAGTTTCGGGTGCAACAATGTCCGATGATGAGGATGACATGCCGATGGATTTCACAATGGATCAATCCAGCGGCGAAGGGCATGATATGATGGGATTTGGCCCCCTACTCCCAACTGAATCTGAACGATCGTTAATGGAAAGAGTTCGACAGGAATTGAAGATTGAGCTGAAGCAGGGATTTAAGTCAAGAATTGAAGATGTAAGAGAGGAAATTCTAAGAAAAAGAAGGGCAGGGAAATTACCGGGGGACACAACTACGGTGCTGAAGAATTGGTGGCAGCAACACTCTAAGTGGCCCTACCCAACTGAAGATGACAAGGCAAAGCTTGTGGAGGAGACAGGGTTGCAGCTGAAGCAAATAAACAATTGGTTCATTAACCAAAGGAAGCGGAACTGGCACAGCAACTCTCAATCGGTCACCTCCTTAAAGTCCAAGCGCAAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010087 GO:0010089 GO:0010191 GO:0010192 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903338 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

255

Amino Acids

29.08

Weight (kDa)

6.27

Isoelectric Point (pI)

58.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	25 - 51	3.2e-13	KNOX1 domain
KNOX2	PF03791	52 - 100	4.1e-16	KNOX2 domain
Homeobox_KN	PF05920	197 - 236	3.1e-19	Homeobox KN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62990
fragaria_vesca	FvH4_5g01260
malus_domestica	MD04G1069700.v1.1 MD06G1071100.v1.1
prunus_persica	Prupe.5G088100_v2.0.a1 Prupe.5G088100_v2.0.a1
pyrus_communis	pycom04g06340
rosa_chinensis	RchiOBHm_Chr7g0199751
rosa_laevigata	RLG00000003773
rosa_multiflora	Rmu_sc0002748.1_g000022
rosa_roxburghii	Rroxscaffold_3G00256460
rosa_rugosa	Rorug07G0056000 Rorug07G0056100
rosa_samantha	Rh7AG181500 Rh7BG184300
rosa_wichuraiana	Rw7G015910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	36, 39, 245, 387, 706
AclWI	GGATC	1 cut(s)	384
AcsI	RAATTY	1 cut(s)	528
AcuI	CTGAAG	4 cut(s)	506, 602, 645, 689
AcvI	CACGTG	1 cut(s)	127
AcyI	GRCGYC	1 cut(s)	149
AfiI	CCNNNNNNNGG	2 cut(s)	18, 138
AflIII	ACRYGT	3 cut(s)	124, 126, 229
AgsI	TTSAA	5 cut(s)	211, 224, 251, 475, 512
AluBI	AGCT	8 cut(s)	73, 80, 112, 166, 254, 484, 643, 667
AluI	AGCT	8 cut(s)	73, 80, 112, 166, 254, 484, 643, 667
Alw21I	GWGCWC	1 cut(s)	206
Alw26I	GTCTC	2 cut(s)	140, 647
AlwI	GGATC	1 cut(s)	384
AlwNI	CAGNNNCTG	1 cut(s)	115
AoxI	GGCC	3 cut(s)	261, 415, 611
ApeKI	GCWGC	4 cut(s)	70, 109, 595, 664
ApoI	RAATTY	1 cut(s)	528
Asp700I	GAANNNNTTC	2 cut(s)	219, 459
AspLEI	GCGC	2 cut(s)	159, 756
AspS9I	GGNCC	2 cut(s)	416, 612
AsuC2I	CCSGG	2 cut(s)	13, 561
AsuHPI	GGTGA	1 cut(s)	727
BbrPI	CACGTG	1 cut(s)	127
Bbv12I	GWGCWC	1 cut(s)	206
BbvI	GCAGC	4 cut(s)	82, 121, 607, 676
BccI	CCATC	2 cut(s)	355, 400
BceAI	ACGGC	1 cut(s)	252
BcnI	CCSGG	2 cut(s)	13, 561
BcoDI	GTCTC	2 cut(s)	140, 647
BfoI	RGCGCY	1 cut(s)	160
BisI	GCNGC	7 cut(s)	37, 40, 71, 110, 388, 596, 665
BlsI	GCNGC	7 cut(s)	38, 41, 72, 111, 389, 597, 666
Bme1390I	CCNGG	2 cut(s)	13, 561
BmgT120I	GGNCC	2 cut(s)	416, 612
BmiI	GGNNCC	1 cut(s)	418
BmrFI	CCNGG	2 cut(s)	13, 561
BpmI	CTGGAG	1 cut(s)	321
BpuMI	CCSGG	2 cut(s)	13, 561
BsaAI	YACGTR	1 cut(s)	127
BsaHI	GRCGYC	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	560
BsaXI	ACNNNNNCTCC	2 cut(s)	644, 674
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 138
Bse118I	RCCGGY	1 cut(s)	66
Bse1I	ACTGG	2 cut(s)	304, 716
BseDI	CCNNGG	1 cut(s)	560
BseGI	GGATG	2 cut(s)	27, 355
BseLI	CCNNNNNNNGG	2 cut(s)	18, 138
BseMII	CTCAG	2 cut(s)	72, 151
BseNI	ACTGG	2 cut(s)	304, 716
BseRI	GAGGAG	1 cut(s)	665
BseXI	GCAGC	4 cut(s)	82, 121, 607, 676
BsgI	GTGCAG	1 cut(s)	105
Bsh1285I	CGRYCG	1 cut(s)	446
BshFI	GGCC	3 cut(s)	263, 417, 613
BsiEI	CGRYCG	1 cut(s)	446
BsiHKAI	GWGCWC	1 cut(s)	206
BsiSI	CCGG	3 cut(s)	12, 67, 560
BslFI	GGGAC	1 cut(s)	578
BslI	CCNNNNNNNGG	2 cut(s)	18, 138
BsmAI	GTCTC	2 cut(s)	140, 647
BsmFI	GGGAC	1 cut(s)	578
BsnI	GGCC	3 cut(s)	263, 417, 613
Bsp1286I	GDGCHC	1 cut(s)	206
Bsp143I	GATC	2 cut(s)	376, 443
BspACI	CCGC	5 cut(s)	36, 39, 245, 387, 706
BspANI	GGCC	3 cut(s)	263, 417, 613
BspCNI	CTCAG	2 cut(s)	73, 150
BspHI	TCATGA	1 cut(s)	52
BspLI	GGNNCC	1 cut(s)	418
BspPI	GGATC	1 cut(s)	384
BsrFI	RCCGGY	1 cut(s)	66
BsrI	ACTGG	2 cut(s)	304, 716
BssAI	RCCGGY	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	560
BssMI	GATC	2 cut(s)	376, 443
BssNI	GRCGYC	1 cut(s)	149
Bst4CI	ACNGT	2 cut(s)	47, 577
BstACI	GRCGYC	1 cut(s)	149
BstBAI	YACGTR	1 cut(s)	127
BstC8I	GCNNGC	2 cut(s)	265, 291
BstDEI	CTNAG	4 cut(s)	81, 137, 533, 606
BstEII	GGTNACC	1 cut(s)	733
BstENI	CCTNNNNNAGG	1 cut(s)	136
BstF5I	GGATG	2 cut(s)	27, 355
BstH2I	RGCGCY	1 cut(s)	160
BstHHI	GCGC	2 cut(s)	159, 756
BstKTI	GATC	2 cut(s)	379, 446
BstMAI	GTCTC	2 cut(s)	140, 647
BstMBI	GATC	2 cut(s)	376, 443
BstMCI	CGRYCG	1 cut(s)	446
BstMWI	GCNNNNNNNGC	7 cut(s)	67, 86, 163, 251, 260, 670, 712
BstNSI	RCATGY	2 cut(s)	233, 358
BstPI	GGTNACC	1 cut(s)	733
BstSCI	CCNGG	2 cut(s)	11, 559
BstV1I	GCAGC	4 cut(s)	82, 121, 607, 676
BsuRI	GGCC	3 cut(s)	263, 417, 613
BtsCI	GGATG	2 cut(s)	27, 355
Cac8I	GCNNGC	2 cut(s)	265, 291
CaiI	CAGNNNCTG	1 cut(s)	115
CciI	TCATGA	1 cut(s)	52
CfoI	GCGC	2 cut(s)	159, 756
Cfr10I	RCCGGY	1 cut(s)	66
Cfr13I	GGNCC	2 cut(s)	416, 612
CseI	GACGC	1 cut(s)	157
CspCI	CAANNNNNGTGG	2 cut(s)	627, 662
CviAII	CATG	5 cut(s)	53, 230, 242, 355, 398
DdeI	CTNAG	4 cut(s)	81, 137, 533, 606
DpnI	GATC	2 cut(s)	378, 445
DpnII	GATC	2 cut(s)	376, 443
Eco57I	CTGAAG	4 cut(s)	506, 602, 645, 689
Eco72I	CACGTG	1 cut(s)	127
Eco91I	GGTNACC	1 cut(s)	733
EcoNI	CCTNNNNNAGG	1 cut(s)	136
EcoO65I	GGTNACC	1 cut(s)	733
FaeI	CATG	5 cut(s)	56, 233, 245, 358, 401
FaiI	YATR	7 cut(s)	54, 63, 231, 243, 356, 399, 404
FalI	AAGNNNNNCTT	2 cut(s)	204, 236
FaqI	GGGAC	1 cut(s)	578
FatI	CATG	5 cut(s)	52, 229, 241, 354, 397
Fnu4HI	GCNGC	7 cut(s)	37, 40, 71, 110, 388, 596, 665
FokI	GGATG	2 cut(s)	34, 362
Fsp4HI	GCNGC	7 cut(s)	37, 40, 71, 110, 388, 596, 665
GlaI	GCGC	2 cut(s)	158, 755
GluI	GCNGC	7 cut(s)	37, 40, 71, 110, 388, 596, 665
GsuI	CTGGAG	1 cut(s)	321
HaeII	RGCGCY	1 cut(s)	160
HaeIII	GGCC	3 cut(s)	263, 417, 613
HapII	CCGG	3 cut(s)	12, 67, 560
HgaI	GACGC	1 cut(s)	157
HhaI	GCGC	2 cut(s)	159, 756
Hin1I	GRCGYC	1 cut(s)	149
Hin1II	CATG	5 cut(s)	56, 233, 245, 358, 401
Hin6I	GCGC	2 cut(s)	157, 754
HinP1I	GCGC	2 cut(s)	157, 754
HindIII	AAGCTT	1 cut(s)	641
HinfI	GANTC	4 cut(s)	8, 237, 307, 434
HpaII	CCGG	3 cut(s)	12, 67, 560
HphI	GGTGA	1 cut(s)	727
Hpy188I	TCNGA	4 cut(s)	192, 236, 340, 439
Hpy188III	TCNNGA	2 cut(s)	53, 504
Hpy99I	CGWCG	2 cut(s)	47, 151
HpyAV	CCTTC	2 cut(s)	386, 537
HpyCH4III	ACNGT	2 cut(s)	47, 577
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	5 cut(s)	4, 122, 289, 329, 664
HpyF10VI	GCNNNNNNNGC	7 cut(s)	67, 86, 163, 251, 260, 670, 712
HpyF3I	CTNAG	4 cut(s)	81, 137, 533, 606
HpySE526I	ACGT	1 cut(s)	126
Hsp92I	GRCGYC	1 cut(s)	149
Hsp92II	CATG	5 cut(s)	56, 233, 245, 358, 401
HspAI	GCGC	2 cut(s)	157, 754
Kzo9I	GATC	2 cut(s)	376, 443
LmnI	GCTCC	1 cut(s)	117
Lsp1109I	GCAGC	4 cut(s)	82, 121, 607, 676
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	733
MalI	GATC	2 cut(s)	378, 445
MboI	GATC	2 cut(s)	376, 443
MboII	GAAGA	5 cut(s)	212, 487, 524, 595, 638
MfeI	CAATTG	1 cut(s)	682
MhlI	GDGCHC	1 cut(s)	206
MluCI	AATT	6 cut(s)	470, 507, 528, 554, 586, 682
MlyI	GAGTC	2 cut(s)	246, 316
MnlI	CCTC	5 cut(s)	108, 340, 517, 643, 748
MroXI	GAANNNNTTC	2 cut(s)	219, 459
MseI	TTAA	4 cut(s)	449, 498, 693, 743
MslI	CAYNNNNRTG	1 cut(s)	359
MspA1I	CMGCKG	2 cut(s)	387, 667
MspI	CCGG	3 cut(s)	12, 67, 560
MspR9I	CCNGG	2 cut(s)	13, 561
MunI	CAATTG	1 cut(s)	682
MwoI	GCNNNNNNNGC	7 cut(s)	67, 86, 163, 251, 260, 670, 712
NciI	CCSGG	2 cut(s)	13, 561
NdeII	GATC	2 cut(s)	376, 443
NlaIII	CATG	5 cut(s)	56, 233, 245, 358, 401
NlaIV	GGNNCC	1 cut(s)	418
NmuCI	GTSAC	1 cut(s)	733
NspI	RCATGY	2 cut(s)	233, 358
PagI	TCATGA	1 cut(s)	52
PciI	ACATGT	1 cut(s)	229
PdmI	GAANNNNTTC	2 cut(s)	219, 459
PfeI	GAWTC	2 cut(s)	8, 434
PkrI	GCNGC	7 cut(s)	38, 41, 72, 111, 389, 597, 666
Ple19I	CGATCG	1 cut(s)	446
PleI	GAGTC	2 cut(s)	245, 315
PmaCI	CACGTG	1 cut(s)	127
PmlI	CACGTG	1 cut(s)	127
PpsI	GAGTC	2 cut(s)	245, 315
Ppu21I	YACGTR	1 cut(s)	127
PscI	ACATGT	1 cut(s)	229
PspCI	CACGTG	1 cut(s)	127
PspEI	GGTNACC	1 cut(s)	733
PspN4I	GGNNCC	1 cut(s)	418
PspPI	GGNCC	2 cut(s)	416, 612
PstNI	CAGNNNCTG	1 cut(s)	115
PvuI	CGATCG	1 cut(s)	446
PvuII	CAGCTG	1 cut(s)	667
RseI	CAYNNNNRTG	1 cut(s)	359
SaqAI	TTAA	4 cut(s)	449, 498, 693, 743
SatI	GCNGC	7 cut(s)	37, 40, 71, 110, 388, 596, 665
Sau3AI	GATC	2 cut(s)	376, 443
Sau96I	GGNCC	2 cut(s)	416, 612
SchI	GAGTC	2 cut(s)	246, 316
ScrFI	CCNGG	2 cut(s)	13, 561
SduI	GDGCHC	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	359
Sse9I	AATT	6 cut(s)	470, 507, 528, 554, 586, 682
SsiI	CCGC	5 cut(s)	36, 39, 245, 387, 706
StyD4I	CCNGG	2 cut(s)	11, 559
TaaI	ACNGT	2 cut(s)	47, 577
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	2 cut(s)	276, 463
TaqII	GACCGA	1 cut(s)	721
TasI	AATT	6 cut(s)	470, 507, 528, 554, 586, 682
TauI	GCSGC	3 cut(s)	39, 42, 390
TfiI	GAWTC	2 cut(s)	8, 434
Tru1I	TTAA	4 cut(s)	449, 498, 693, 743
Tru9I	TTAA	4 cut(s)	449, 498, 693, 743
TseFI	GTSAC	1 cut(s)	733
TseI	GCWGC	4 cut(s)	70, 109, 595, 664
Tsp45I	GTSAC	1 cut(s)	733
TspDTI	ATGAA	1 cut(s)	679
XagI	CCTNNNNNAGG	1 cut(s)	136
XapI	RAATTY	1 cut(s)	528
XceI	RCATGY	2 cut(s)	233, 358
XmnI	GAANNNNTTC	2 cut(s)	219, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.