Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0015425

Physical Location & Seq

Genomic Coordinates Forward (+)

9918838 .. 9923753

Gene Structure 4916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G088100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGCAAGAATCTGGTTTGGGCATGATGGGTGGTGGAGGTTTAAGCAGCGGCGATGGTCATCATGAGCACCATAATCGACAACTCAAGGCTGAGATAGCCACCCACCCTCTCTACGAGCAGCTTCTGTCTGCCCACGTGTCATGCCTCCGAGTGGCCACGCCAATCGATCAGCTGCCACTCATAGACGCGCAGCTCTCTCAGTCACACCATCTGTTGCGCTCTTATGCCTCTCAGCAGCAGCATGGCCACTCAGTCTCTCCCCATGAGCGCCAAGAGCTTGATAACTTCTTGGCACAATATTTGATCGTTCTGTGCTCTTTCAAAGAACAACTTCAGCAACATGTCAGAGTCCATGCCGTGGAAGCTGTCATGGCCTGCCGTGAAATTGAAAGCAACTTGCAGGCTCTCACTGGAGTAAGTCTGGGTGAAGGTTCAGGTGCAACAATGTCAGATGATGAGGATGACATGCAGATGGATTTCTCTTTGGATCAATCCGGCGGCGACGGGCATGACATGATGGGATTTGGCCCCCTACTCCCAACTGAATCGGAACGATCGCTAATGGAAAGAGTTCGCCAGGAATTGAAGATTGAGCTGAAGCAGGGCTTTAAGTCAAGAATTGAAGATGTGAGGGAGGAGATTTTAAGAAAAAGAAGGGCAGGCAAACTTCCTGGTGACACTACTACAGTGTTGAAGAATTGGTGGCAGCAACACTCAAAGTGGCCCTACCCAACTGAAGATGACAAGGCAAAACTTGTGGAGGAAACAGGGCTGCAGCTCAAGCAAATAAACAACTGGTTCATCAATCAAAGGAAGCGCAACTGGCACAGCAACTCTCAATCAGTGACCTCTTTAAAGTCGAAGCGCAAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010087 GO:0010089 GO:0010191 GO:0010192 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903338 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

292

Amino Acids

33.04

Weight (kDa)

6.35

Isoelectric Point (pI)

60.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62990
fragaria_vesca	FvH4_5g01260
malus_domestica	MD04G1069700.v1.1 MD06G1071100.v1.1
prunus_persica	Prupe.5G088100_v2.0.a1 Prupe.5G088100_v2.0.a1
pyrus_communis	pycom04g06340
rosa_chinensis	RchiOBHm_Chr7g0199751
rosa_laevigata	RLG00000003773
rosa_multiflora	Rmu_sc0002748.1_g000022
rosa_roxburghii	Rroxscaffold_3G00256460
rosa_rugosa	Rorug07G0056000 Rorug07G0056100
rosa_samantha	Rh7AG181500 Rh7BG184300
rosa_wichuraiana	Rw7G015910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	358
AccII	CGCG	1 cut(s)	188
AciI	CCGC	2 cut(s)	48, 498
AclWI	GGATC	1 cut(s)	495
AcoI	YGGCCR	2 cut(s)	153, 244
AcuI	CTGAAG	3 cut(s)	317, 617, 756
AcvI	CACGTG	1 cut(s)	136
AfiI	CCNNNNNNNGG	2 cut(s)	151, 358
AflIII	ACRYGT	2 cut(s)	135, 340
AgsI	TTSAA	5 cut(s)	322, 389, 586, 623, 694
AjnI	CCWGG	2 cut(s)	576, 670
AluBI	AGCT	7 cut(s)	121, 172, 193, 277, 365, 595, 778
AluI	AGCT	7 cut(s)	121, 172, 193, 277, 365, 595, 778
Alw21I	GWGCWC	2 cut(s)	69, 317
Alw26I	GTCTC	1 cut(s)	259
AlwI	GGATC	1 cut(s)	495
AlwNI	CAGNNNCTG	1 cut(s)	124
AoxI	GGCC	5 cut(s)	153, 244, 372, 526, 722
ApeKI	GCWGC	9 cut(s)	45, 118, 172, 190, 235, 238, 706, 772, 775
Asp700I	GAANNNNTTC	2 cut(s)	330, 570
AspLEI	GCGC	5 cut(s)	190, 219, 270, 819, 867
AspS9I	GGNCC	2 cut(s)	527, 723
AsuHPI	GGTGA	2 cut(s)	437, 686
BalI	TGGCCA	2 cut(s)	155, 246
BbrPI	CACGTG	1 cut(s)	136
Bbv12I	GWGCWC	2 cut(s)	69, 317
BbvI	GCAGC	9 cut(s)	57, 130, 159, 202, 247, 250, 718, 759, 787
BccI	CCATC	5 cut(s)	19, 47, 216, 466, 511
BceAI	ACGGC	2 cut(s)	341, 363
BcgI	CGANNNNNNTGC	2 cut(s)	56, 90
BciT130I	CCWGG	2 cut(s)	578, 672
BcoDI	GTCTC	1 cut(s)	259
BfmI	CTRYAG	2 cut(s)	684, 773
BfoI	RGCGCY	1 cut(s)	271
Bme1390I	CCNGG	2 cut(s)	578, 672
BmgT120I	GGNCC	2 cut(s)	527, 723
BmiI	GGNNCC	1 cut(s)	529
BmrFI	CCNGG	2 cut(s)	578, 672
BpmI	CTGGAG	1 cut(s)	432
BpuEI	CTTGAG	2 cut(s)	68, 764
Bsa29I	ATCGAT	1 cut(s)	165
BsaAI	YACGTR	1 cut(s)	136
BsaBI	GATNNNNATC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 358
Bse1I	ACTGG	3 cut(s)	415, 800, 827
Bse8I	GATNNNNATC	1 cut(s)	57
BseBI	CCWGG	2 cut(s)	578, 672
BseCI	ATCGAT	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	1 cut(s)	466
BseJI	GATNNNNATC	1 cut(s)	57
BseLI	CCNNNNNNNGG	2 cut(s)	151, 358
BseMII	CTCAG	4 cut(s)	81, 212, 245, 264
BseNI	ACTGG	3 cut(s)	415, 800, 827
BseRI	GAGGAG	1 cut(s)	650
BseXI	GCAGC	9 cut(s)	57, 130, 159, 202, 247, 250, 718, 759, 787
Bsh1236I	CGCG	1 cut(s)	188
Bsh1285I	CGRYCG	1 cut(s)	557
BshFI	GGCC	5 cut(s)	155, 246, 374, 528, 724
BshVI	ATCGAT	1 cut(s)	165
BsiEI	CGRYCG	1 cut(s)	557
BsiHKAI	GWGCWC	2 cut(s)	69, 317
BsiSI	CCGG	1 cut(s)	495
BslI	CCNNNNNNNGG	2 cut(s)	151, 358
BsmAI	GTCTC	1 cut(s)	259
BsnI	GGCC	5 cut(s)	155, 246, 374, 528, 724
Bsp1286I	GDGCHC	2 cut(s)	69, 317
Bsp143I	GATC	4 cut(s)	166, 303, 487, 554
BspACI	CCGC	2 cut(s)	48, 498
BspANI	GGCC	5 cut(s)	155, 246, 374, 528, 724
BspCNI	CTCAG	4 cut(s)	82, 211, 244, 263
BspDI	ATCGAT	1 cut(s)	165
BspFNI	CGCG	1 cut(s)	188
BspHI	TCATGA	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	529
BspMAI	CTGCAG	1 cut(s)	777
BspPI	GGATC	1 cut(s)	495
BsrI	ACTGG	3 cut(s)	415, 800, 827
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	4 cut(s)	166, 303, 487, 554
Bst2UI	CCWGG	2 cut(s)	578, 672
Bst4CI	ACNGT	1 cut(s)	688
BstBAI	YACGTR	1 cut(s)	136
BstC8I	GCNNGC	3 cut(s)	376, 402, 661
BstDEI	CTNAG	4 cut(s)	90, 198, 231, 250
BstDSI	CCRYGG	1 cut(s)	357
BstF5I	GGATG	1 cut(s)	466
BstFNI	CGCG	1 cut(s)	188
BstH2I	RGCGCY	1 cut(s)	271
BstHHI	GCGC	5 cut(s)	190, 219, 270, 819, 867
BstKTI	GATC	4 cut(s)	169, 306, 490, 557
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	4 cut(s)	166, 303, 487, 554
BstMCI	CGRYCG	1 cut(s)	557
BstMWI	GCNNNNNNNGC	6 cut(s)	95, 274, 362, 371, 781, 823
BstNI	CCWGG	2 cut(s)	578, 672
BstNSI	RCATGY	2 cut(s)	344, 469
BstSCI	CCNGG	2 cut(s)	576, 670
BstSFI	CTRYAG	2 cut(s)	684, 773
BstUI	CGCG	1 cut(s)	188
BstV1I	GCAGC	9 cut(s)	57, 130, 159, 202, 247, 250, 718, 759, 787
Bsu15I	ATCGAT	1 cut(s)	165
BsuRI	GGCC	5 cut(s)	155, 246, 374, 528, 724
BsuTUI	ATCGAT	1 cut(s)	165
BtgI	CCRYGG	1 cut(s)	357
BtgZI	GCGATG	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	466
BtsIMutI	CAGTG	3 cut(s)	408, 693, 849
Cac8I	GCNNGC	3 cut(s)	376, 402, 661
CaiI	CAGNNNCTG	1 cut(s)	124
CciI	TCATGA	1 cut(s)	61
CfoI	GCGC	5 cut(s)	190, 219, 270, 819, 867
Cfr13I	GGNCC	2 cut(s)	527, 723
ClaI	ATCGAT	1 cut(s)	165
CseI	GACGC	1 cut(s)	194
CspCI	CAANNNNNGTGG	2 cut(s)	738, 773
DdeI	CTNAG	4 cut(s)	90, 198, 231, 250
DpnI	GATC	4 cut(s)	168, 305, 489, 556
DpnII	GATC	4 cut(s)	166, 303, 487, 554
DraI	TTTAAA	1 cut(s)	855
EaeI	YGGCCR	2 cut(s)	153, 244
Eco57I	CTGAAG	3 cut(s)	317, 617, 756
Eco72I	CACGTG	1 cut(s)	136
EcoRII	CCWGG	2 cut(s)	576, 670
FalI	AAGNNNNNCTT	4 cut(s)	315, 347, 590, 622
FokI	GGATG	1 cut(s)	473
GlaI	GCGC	5 cut(s)	189, 218, 269, 818, 866
GsuI	CTGGAG	1 cut(s)	432
HaeII	RGCGCY	1 cut(s)	271
HaeIII	GGCC	5 cut(s)	155, 246, 374, 528, 724
HapII	CCGG	1 cut(s)	495
HgaI	GACGC	1 cut(s)	194
HhaI	GCGC	5 cut(s)	190, 219, 270, 819, 867
Hin6I	GCGC	5 cut(s)	188, 217, 268, 817, 865
HinP1I	GCGC	5 cut(s)	188, 217, 268, 817, 865
HinfI	GANTC	3 cut(s)	8, 348, 545
HpaII	CCGG	1 cut(s)	495
HphI	GGTGA	2 cut(s)	437, 686
Hpy188I	TCNGA	4 cut(s)	149, 347, 451, 550
Hpy188III	TCNNGA	2 cut(s)	62, 615
Hpy99I	CGWCG	1 cut(s)	506
HpyAV	CCTTC	2 cut(s)	422, 648
HpyCH4III	ACNGT	1 cut(s)	688
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	5 cut(s)	4, 400, 440, 469, 775
HpyF10VI	GCNNNNNNNGC	6 cut(s)	95, 274, 362, 371, 781, 823
HpyF3I	CTNAG	4 cut(s)	90, 198, 231, 250
HpySE526I	ACGT	1 cut(s)	135
HspAI	GCGC	5 cut(s)	188, 217, 268, 817, 865
Kzo9I	GATC	4 cut(s)	166, 303, 487, 554
Lsp1109I	GCAGC	9 cut(s)	57, 130, 159, 202, 247, 250, 718, 759, 787
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	3 cut(s)	201, 674, 844
MalI	GATC	4 cut(s)	168, 305, 489, 556
MboI	GATC	4 cut(s)	166, 303, 487, 554
MboII	GAAGA	4 cut(s)	598, 635, 706, 749
MhlI	GDGCHC	2 cut(s)	69, 317
MlsI	TGGCCA	2 cut(s)	155, 246
MluCI	AATT	4 cut(s)	384, 581, 618, 697
MluNI	TGGCCA	2 cut(s)	155, 246
MlyI	GAGTC	1 cut(s)	357
MnlI	CCTC	9 cut(s)	29, 117, 155, 238, 451, 624, 628, 754, 859
Mox20I	TGGCCA	2 cut(s)	155, 246
MroXI	GAANNNNTTC	2 cut(s)	330, 570
MscI	TGGCCA	2 cut(s)	155, 246
MseI	TTAA	4 cut(s)	41, 609, 644, 854
MslI	CAYNNNNRTG	1 cut(s)	470
Msp20I	TGGCCA	2 cut(s)	155, 246
MspA1I	CMGCKG	2 cut(s)	48, 172
MspI	CCGG	1 cut(s)	495
MspR9I	CCNGG	2 cut(s)	578, 672
MvaI	CCWGG	2 cut(s)	578, 672
MvnI	CGCG	1 cut(s)	188
MwoI	GCNNNNNNNGC	6 cut(s)	95, 274, 362, 371, 781, 823
NdeII	GATC	4 cut(s)	166, 303, 487, 554
NlaIV	GGNNCC	1 cut(s)	529
NmuCI	GTSAC	3 cut(s)	201, 674, 844
NspI	RCATGY	2 cut(s)	344, 469
PagI	TCATGA	1 cut(s)	61
PciI	ACATGT	1 cut(s)	340
PdmI	GAANNNNTTC	2 cut(s)	330, 570
PfeI	GAWTC	2 cut(s)	8, 545
PflMI	CCANNNNNTGG	1 cut(s)	358
Ple19I	CGATCG	1 cut(s)	557
PleI	GAGTC	1 cut(s)	356
PmaCI	CACGTG	1 cut(s)	136
PmlI	CACGTG	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	356
Ppu21I	YACGTR	1 cut(s)	136
PscI	ACATGT	1 cut(s)	340
Psp6I	CCWGG	2 cut(s)	576, 670
PspCI	CACGTG	1 cut(s)	136
PspGI	CCWGG	2 cut(s)	576, 670
PspN4I	GGNNCC	1 cut(s)	529
PspPI	GGNCC	2 cut(s)	527, 723
PstI	CTGCAG	1 cut(s)	777
PstNI	CAGNNNCTG	1 cut(s)	124
PvuI	CGATCG	1 cut(s)	557
PvuII	CAGCTG	1 cut(s)	172
RseI	CAYNNNNRTG	1 cut(s)	470
SaqAI	TTAA	4 cut(s)	41, 609, 644, 854
Sau3AI	GATC	4 cut(s)	166, 303, 487, 554
Sau96I	GGNCC	2 cut(s)	527, 723
SchI	GAGTC	1 cut(s)	357
ScrFI	CCNGG	2 cut(s)	578, 672
SduI	GDGCHC	2 cut(s)	69, 317
SfcI	CTRYAG	2 cut(s)	684, 773
SmiMI	CAYNNNNRTG	1 cut(s)	470
SmlI	CTYRAG	2 cut(s)	83, 779
SmoI	CTYRAG	2 cut(s)	83, 779
Sse9I	AATT	4 cut(s)	384, 581, 618, 697
SsiI	CCGC	2 cut(s)	48, 498
SspI	AATATT	1 cut(s)	299
StyD4I	CCNGG	2 cut(s)	576, 670
TaaI	ACNGT	1 cut(s)	688
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	3 cut(s)	76, 165, 860
TasI	AATT	4 cut(s)	384, 581, 618, 697
TauI	GCSGC	2 cut(s)	51, 501
TfiI	GAWTC	2 cut(s)	8, 545
Tru1I	TTAA	4 cut(s)	41, 609, 644, 854
Tru9I	TTAA	4 cut(s)	41, 609, 644, 854
TscAI	CASTG	3 cut(s)	415, 693, 849
TseFI	GTSAC	3 cut(s)	201, 674, 844
TseI	GCWGC	9 cut(s)	45, 118, 172, 190, 235, 238, 706, 772, 775
Tsp45I	GTSAC	3 cut(s)	201, 674, 844
TspDTI	ATGAA	1 cut(s)	790
TspRI	CASTG	3 cut(s)	415, 693, 849
Van91I	CCANNNNNTGG	1 cut(s)	358
XceI	RCATGY	2 cut(s)	344, 469
XmnI	GAANNNNTTC	2 cut(s)	330, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.