Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002748.1

Orthogroup ID

OG0015425

Physical Location & Seq

Genomic Coordinates Forward (+)

115194 .. 118011

Gene Structure 2818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002748.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

atgcaagacagtggcttgggaatgatgggttctggcggaggtggaggtctgagcggcggtggtgacgaccatactcaccaactcaagtctgagattgccacacaccctctctacgaacaactcctgtcggcacacgtgtcgtgtctccgggtcgccacgccgatcgatcagttgccgttgatcgatgctcagctctcacagtcacaccatctcctccgctcctacgcctcgcaccaacaacagcacggccattctttatcgccccatgagcgccaagagctcgataacttcttgtcgcagtatttgatagtgttgtgctcgttcaaagaacaactgcagcaacatgtgagagttcatgccgtcgaggcggtcatggcctgccgtgagattgaaagcaccttgcaggcccttactggagtgagtctgggtgaaggaacaggtgcaacaatgtcagatgatgaagatgacatgccaatggatttctctatggatcaagctggctctgatgcccacgacatgatgggatttggactccctactgaatcggaaagatctctcatggaaagagttcgtcaggaattgaagattgagcttaagcagggttttaagtcgagaattgaggatgtaagggaggaaatcttaagaaaaagaagggcagggaaattacctggagacacaactacagtgctgaagaattggtggcagcaacactcaaagtggccatatccaactgaagatgacaaggcaaaacttgtggaagagacagggttgcagcttaagcaaataaacaattggttcatcaatcaaaggaagcgcaattggcacagcaactctcagtcagtgacttctttgaagtcgaagcgcaaaagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010087 GO:0010089 GO:0010191 GO:0010192 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903338 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

290

Amino Acids

32.73

Weight (kDa)

6.2

Isoelectric Point (pI)

59.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62990
fragaria_vesca	FvH4_5g01260
malus_domestica	MD04G1069700.v1.1 MD06G1071100.v1.1
prunus_persica	Prupe.5G088100_v2.0.a1 Prupe.5G088100_v2.0.a1
pyrus_communis	pycom04g06340
rosa_chinensis	RchiOBHm_Chr7g0199751
rosa_laevigata	RLG00000003773
rosa_multiflora	Rmu_sc0002748.1_g000022
rosa_roxburghii	Rroxscaffold_3G00256460
rosa_rugosa	Rorug07G0056000 Rorug07G0056100
rosa_samantha	Rh7AG181500 Rh7BG184300
rosa_wichuraiana	Rw7G015910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	54, 219
AciI	CCGC	5 cut(s)	36, 54, 57, 217, 368
AclWI	GGATC	1 cut(s)	498
AcoI	YGGCCR	2 cut(s)	247, 719
AcuI	CTGAAG	2 cut(s)	710, 753
AcvI	CACGTG	1 cut(s)	136
AflII	CTTAAG	3 cut(s)	593, 640, 776
AflIII	ACRYGT	3 cut(s)	133, 135, 343
AgsI	TTSAA	4 cut(s)	325, 392, 583, 853
AjnI	CCWGG	1 cut(s)	667
AluBI	AGCT	5 cut(s)	193, 280, 497, 592, 775
AluI	AGCT	5 cut(s)	193, 280, 497, 592, 775
Alw21I	GWGCWC	2 cut(s)	282, 320
Alw26I	GTCTC	3 cut(s)	149, 666, 755
AlwI	GGATC	1 cut(s)	498
AoxI	GGCC	4 cut(s)	247, 375, 405, 719
ApeKI	GCWGC	3 cut(s)	337, 703, 772
Asp700I	GAANNNNTTC	1 cut(s)	567
AspLEI	GCGC	3 cut(s)	273, 816, 864
AspS9I	GGNCC	1 cut(s)	406
AsuC2I	CCSGG	1 cut(s)	149
AsuHPI	GGTGA	3 cut(s)	68, 74, 440
BalI	TGGCCA	1 cut(s)	721
BanII	GRGCYC	1 cut(s)	282
BbrPI	CACGTG	1 cut(s)	136
Bbv12I	GWGCWC	2 cut(s)	282, 320
BbvI	GCAGC	3 cut(s)	349, 715, 784
BccI	CCATC	3 cut(s)	19, 216, 514
BceAI	ACGGC	4 cut(s)	160, 262, 344, 366
BcgI	CGANNNNNNTGC	2 cut(s)	120, 154
BciT130I	CCWGG	1 cut(s)	669
BcnI	CCSGG	1 cut(s)	149
BcoDI	GTCTC	3 cut(s)	149, 666, 755
BfmI	CTRYAG	2 cut(s)	335, 681
BfoI	RGCGCY	1 cut(s)	274
BfrI	CTTAAG	3 cut(s)	593, 640, 776
BglI	GCCNNNNNGGC	1 cut(s)	365
BglII	AGATCT	1 cut(s)	551
BisI	GCNGC	4 cut(s)	55, 338, 704, 773
BlpI	GCTNAGC	1 cut(s)	189
BlsI	GCNGC	4 cut(s)	56, 339, 705, 774
Bme1390I	CCNGG	2 cut(s)	149, 669
BmgT120I	GGNCC	1 cut(s)	406
BmrFI	CCNGG	2 cut(s)	149, 669
BmsI	GCATC	2 cut(s)	175, 496
BpmI	CTGGAG	2 cut(s)	435, 690
Bpu1102I	GCTNAGC	1 cut(s)	189
BpuEI	CTTGAG	1 cut(s)	68
BpuMI	CCSGG	1 cut(s)	149
Bsa29I	ATCGAT	2 cut(s)	165, 183
BsaAI	YACGTR	1 cut(s)	136
BsaXI	ACNNNNNCTCC	2 cut(s)	195, 225
Bse1I	ACTGG	1 cut(s)	418
BseBI	CCWGG	1 cut(s)	669
BseCI	ATCGAT	2 cut(s)	165, 183
BseGI	GGATG	1 cut(s)	628
BseMII	CTCAG	4 cut(s)	41, 81, 203, 848
BseNI	ACTGG	1 cut(s)	418
BseRI	GAGGAG	1 cut(s)	203
BseXI	GCAGC	3 cut(s)	349, 715, 784
Bsh1285I	CGRYCG	1 cut(s)	165
BshFI	GGCC	4 cut(s)	249, 377, 407, 721
BshVI	ATCGAT	2 cut(s)	165, 183
BsiEI	CGRYCG	1 cut(s)	165
BsiHKAI	GWGCWC	2 cut(s)	282, 320
BsiSI	CCGG	1 cut(s)	148
BsmAI	GTCTC	3 cut(s)	149, 666, 755
BsnI	GGCC	4 cut(s)	249, 377, 407, 721
Bsp1286I	GDGCHC	2 cut(s)	282, 320
Bsp143I	GATC	5 cut(s)	162, 166, 180, 490, 551
Bsp1720I	GCTNAGC	1 cut(s)	189
BspACI	CCGC	5 cut(s)	36, 54, 57, 217, 368
BspANI	GGCC	4 cut(s)	249, 377, 407, 721
BspCNI	CTCAG	4 cut(s)	42, 82, 202, 847
BspDI	ATCGAT	2 cut(s)	165, 183
BspMAI	CTGCAG	1 cut(s)	339
BspPI	GGATC	1 cut(s)	498
BspTI	CTTAAG	3 cut(s)	593, 640, 776
BsrBI	CCGCTC	2 cut(s)	54, 219
BsrI	ACTGG	1 cut(s)	418
BssMI	GATC	5 cut(s)	162, 166, 180, 490, 551
Bst2UI	CCWGG	1 cut(s)	669
Bst4CI	ACNGT	3 cut(s)	11, 201, 685
Bst6I	CTCTTC	1 cut(s)	753
BstAFI	CTTAAG	3 cut(s)	593, 640, 776
BstBAI	YACGTR	1 cut(s)	136
BstC8I	GCNNGC	3 cut(s)	379, 405, 499
BstDEI	CTNAG	4 cut(s)	50, 90, 189, 834
BstF5I	GGATG	1 cut(s)	628
BstH2I	RGCGCY	1 cut(s)	274
BstHHI	GCGC	3 cut(s)	273, 816, 864
BstKTI	GATC	5 cut(s)	165, 169, 183, 493, 554
BstMAI	GTCTC	3 cut(s)	149, 666, 755
BstMBI	GATC	5 cut(s)	162, 166, 180, 490, 551
BstMCI	CGRYCG	1 cut(s)	165
BstMWI	GCNNNNNNNGC	6 cut(s)	268, 277, 365, 374, 778, 820
BstNI	CCWGG	1 cut(s)	669
BstNSI	RCATGY	2 cut(s)	347, 472
BstSCI	CCNGG	2 cut(s)	147, 667
BstSFI	CTRYAG	2 cut(s)	335, 681
BstV1I	GCAGC	3 cut(s)	349, 715, 784
BstX2I	RGATCY	1 cut(s)	551
BstYI	RGATCY	1 cut(s)	551
Bsu15I	ATCGAT	2 cut(s)	165, 183
BsuRI	GGCC	4 cut(s)	249, 377, 407, 721
BsuTUI	ATCGAT	2 cut(s)	165, 183
BtsCI	GGATG	1 cut(s)	628
BtsIMutI	CAGTG	3 cut(s)	16, 690, 846
Cac8I	GCNNGC	3 cut(s)	379, 405, 499
CfoI	GCGC	3 cut(s)	273, 816, 864
Cfr13I	GGNCC	1 cut(s)	406
ClaI	ATCGAT	2 cut(s)	165, 183
CspCI	CAANNNNNGTGG	2 cut(s)	735, 770
CviAII	CATG	7 cut(s)	266, 344, 356, 373, 469, 517, 559
DdeI	CTNAG	4 cut(s)	50, 90, 189, 834
DpnI	GATC	5 cut(s)	164, 168, 182, 492, 553
DpnII	GATC	5 cut(s)	162, 166, 180, 490, 551
EaeI	YGGCCR	2 cut(s)	247, 719
Eam1104I	CTCTTC	1 cut(s)	753
EarI	CTCTTC	1 cut(s)	753
EciI	GGCGGA	1 cut(s)	51
Ecl136II	GAGCTC	1 cut(s)	280
Eco24I	GRGCYC	1 cut(s)	282
Eco53kI	GAGCTC	1 cut(s)	280
Eco57I	CTGAAG	2 cut(s)	710, 753
Eco72I	CACGTG	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	280
EcoO109I	RGGNCCY	1 cut(s)	406
EcoRII	CCWGG	1 cut(s)	667
EcoT38I	GRGCYC	1 cut(s)	282
FaeI	CATG	7 cut(s)	269, 347, 359, 376, 472, 520, 562
FatI	CATG	7 cut(s)	265, 343, 355, 372, 468, 516, 558
Fnu4HI	GCNGC	4 cut(s)	55, 338, 704, 773
FokI	GGATG	1 cut(s)	635
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	4 cut(s)	55, 338, 704, 773
GlaI	GCGC	3 cut(s)	272, 815, 863
GluI	GCNGC	4 cut(s)	55, 338, 704, 773
GsuI	CTGGAG	2 cut(s)	435, 690
HaeII	RGCGCY	1 cut(s)	274
HaeIII	GGCC	4 cut(s)	249, 377, 407, 721
HapII	CCGG	1 cut(s)	148
HhaI	GCGC	3 cut(s)	273, 816, 864
Hin1II	CATG	7 cut(s)	269, 347, 359, 376, 472, 520, 562
Hin6I	GCGC	3 cut(s)	271, 814, 862
HinP1I	GCGC	3 cut(s)	271, 814, 862
HinfI	GANTC	3 cut(s)	421, 531, 542
HpaII	CCGG	1 cut(s)	148
HphI	GGTGA	3 cut(s)	68, 74, 440
Hpy188I	TCNGA	5 cut(s)	51, 91, 454, 505, 547
Hpy188III	TCNNGA	2 cut(s)	575, 612
Hpy99I	CGWCG	1 cut(s)	365
HpyAV	CCTTC	2 cut(s)	425, 645
HpyCH4III	ACNGT	3 cut(s)	11, 201, 685
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	5 cut(s)	4, 337, 403, 443, 772
HpyF10VI	GCNNNNNNNGC	6 cut(s)	268, 277, 365, 374, 778, 820
HpyF3I	CTNAG	4 cut(s)	50, 90, 189, 834
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	7 cut(s)	269, 347, 359, 376, 472, 520, 562
HspAI	GCGC	3 cut(s)	271, 814, 862
Kzo9I	GATC	5 cut(s)	162, 166, 180, 490, 551
LmnI	GCTCC	1 cut(s)	224
Lsp1109I	GCAGC	3 cut(s)	349, 715, 784
LweI	GCATC	2 cut(s)	175, 496
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	3 cut(s)	62, 201, 841
MalI	GATC	5 cut(s)	164, 168, 182, 492, 553
MbiI	CCGCTC	2 cut(s)	54, 219
MboI	GATC	5 cut(s)	162, 166, 180, 490, 551
MboII	GAAGA	5 cut(s)	473, 595, 703, 746, 770
MfeI	CAATTG	2 cut(s)	790, 817
MflI	RGATCY	1 cut(s)	551
MhlI	GDGCHC	2 cut(s)	282, 320
MlsI	TGGCCA	1 cut(s)	721
MluCI	AATT	6 cut(s)	578, 615, 662, 694, 790, 817
MluNI	TGGCCA	1 cut(s)	721
MlyI	GAGTC	2 cut(s)	430, 525
MmeI	TCCRAC	1 cut(s)	752
MnlI	CCTC	8 cut(s)	32, 38, 117, 224, 238, 358, 613, 625
Mox20I	TGGCCA	1 cut(s)	721
MroXI	GAANNNNTTC	1 cut(s)	567
MscI	TGGCCA	1 cut(s)	721
MseI	TTAA	4 cut(s)	594, 606, 641, 777
MslI	CAYNNNNRTG	1 cut(s)	473
Msp20I	TGGCCA	1 cut(s)	721
MspCI	CTTAAG	3 cut(s)	593, 640, 776
MspI	CCGG	1 cut(s)	148
MspR9I	CCNGG	2 cut(s)	149, 669
MunI	CAATTG	2 cut(s)	790, 817
MvaI	CCWGG	1 cut(s)	669
MwoI	GCNNNNNNNGC	6 cut(s)	268, 277, 365, 374, 778, 820
NciI	CCSGG	1 cut(s)	149
NdeII	GATC	5 cut(s)	162, 166, 180, 490, 551
NlaIII	CATG	7 cut(s)	269, 347, 359, 376, 472, 520, 562
NmuCI	GTSAC	3 cut(s)	62, 201, 841
NspI	RCATGY	2 cut(s)	347, 472
PciI	ACATGT	1 cut(s)	343
PdmI	GAANNNNTTC	1 cut(s)	567
PfeI	GAWTC	1 cut(s)	542
PkrI	GCNGC	4 cut(s)	56, 339, 705, 774
Ple19I	CGATCG	1 cut(s)	165
PleI	GAGTC	2 cut(s)	429, 525
PmaCI	CACGTG	1 cut(s)	136
PmlI	CACGTG	1 cut(s)	136
PpsI	GAGTC	2 cut(s)	429, 525
Ppu21I	YACGTR	1 cut(s)	136
PscI	ACATGT	1 cut(s)	343
Psp124BI	GAGCTC	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	667
PspCI	CACGTG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	667
PspPI	GGNCC	1 cut(s)	406
PstI	CTGCAG	1 cut(s)	339
PsuI	RGATCY	1 cut(s)	551
PvuI	CGATCG	1 cut(s)	165
RseI	CAYNNNNRTG	1 cut(s)	473
SacI	GAGCTC	1 cut(s)	282
SaqAI	TTAA	4 cut(s)	594, 606, 641, 777
SatI	GCNGC	4 cut(s)	55, 338, 704, 773
Sau3AI	GATC	5 cut(s)	162, 166, 180, 490, 551
Sau96I	GGNCC	1 cut(s)	406
SchI	GAGTC	2 cut(s)	430, 525
ScrFI	CCNGG	2 cut(s)	149, 669
SduI	GDGCHC	2 cut(s)	282, 320
SfaNI	GCATC	2 cut(s)	175, 496
SfcI	CTRYAG	2 cut(s)	335, 681
SmiMI	CAYNNNNRTG	1 cut(s)	473
SmlI	CTYRAG	4 cut(s)	83, 593, 640, 776
SmoI	CTYRAG	4 cut(s)	83, 593, 640, 776
Sse9I	AATT	6 cut(s)	578, 615, 662, 694, 790, 817
SsiI	CCGC	5 cut(s)	36, 54, 57, 217, 368
SstI	GAGCTC	1 cut(s)	282
StyD4I	CCNGG	2 cut(s)	147, 667
TaaI	ACNGT	3 cut(s)	11, 201, 685
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	6 cut(s)	165, 183, 282, 363, 611, 857
TasI	AATT	6 cut(s)	578, 615, 662, 694, 790, 817
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	542
Tru1I	TTAA	4 cut(s)	594, 606, 641, 777
Tru9I	TTAA	4 cut(s)	594, 606, 641, 777
TscAI	CASTG	3 cut(s)	16, 690, 846
TseFI	GTSAC	3 cut(s)	62, 201, 841
TseI	GCWGC	3 cut(s)	337, 703, 772
Tsp45I	GTSAC	3 cut(s)	62, 201, 841
TspDTI	ATGAA	3 cut(s)	344, 474, 787
TspRI	CASTG	3 cut(s)	16, 690, 846
Vha464I	CTTAAG	3 cut(s)	593, 640, 776
XceI	RCATGY	2 cut(s)	347, 472
XmnI	GAANNNNTTC	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.