Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0015425

Physical Location & Seq

Genomic Coordinates Reverse (-)

14771880 .. 14775838

Gene Structure 3959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG184300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGCAAGACAGTGGCTTGGGAATGATGGGTTCTGGCGGAGGTGGAGGTCTGAGTGGCGGTGGCGGCGACCATACTCACCAACTCAAGTCTGAGATTGCCACACACCCTCTCTACGAACAACTCCTGTCGGCACACGTGTCGTGTCTCCGGGTCGCCACGCCGATCGATCAGTTGCCGTTGATCGATGCTCAGCTCTCACAGTCACACCATCTCCTCCGCTCCTACGCCTCGCACCATCAACAGCACGGCCATTCTTTATCCCCCCATGAGCGCCAAGAGCTCGATAACTTCTTGTCGCAGTATTTGATAATGTTGTGCTCGTTCAAAGAACAACTGCAGCAACATGTGAGAGTTCATGCCGTCGAGGCGGTCATGGCCTGCCGTGAGATTGAAAGCACCTTGCAGGCTCTTACTGGAGTGAGTCTTGGTGAAGGAACAGGTGCAACAATGTCAGATGATGAAGATGACATGCCAATGGATTTCTCTATGGATCAAGCTGGCTCTGATGCCCACGACATGATGGGATTTGGACTCCCTACTGAATCTGAAAGATCTCTCATGGAAAGAGTTCGTCAGGAATTGAAGATTGAGCTTAAGCAGGGTTTTAAGTCGAGAATTGAGGATGTAAGGGAGGAAATCTTAAGAAAAAGAAGGGCAGGGAAATTACCTGGAGACACAACTACAGTGCTGAAGAATTGGTGGCAGCAACACTCAAAGTGGCCATATCCAACTGAAGATGACAAGGCAAAACTTGTGGAAGAGACAGGGTTGCAACTTAAGCAAATAAACAATTGGTTCATCAATCAAAGGAAGCGCAATTGGCACAGCAACTCTCAGTCAGTGACTTCTTTGAAGTCGAAGCGCAAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010087 GO:0010089 GO:0010191 GO:0010192 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903338 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

290

Amino Acids

32.72

Weight (kDa)

6.34

Isoelectric Point (pI)

59.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	28 - 69	6.5e-19	KNOX1 domain
KNOX2	PF03791	88 - 138	4.9e-17	KNOX2 domain
Homeobox_KN	PF05920	233 - 272	3.7e-19	Homeobox KN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62990
fragaria_vesca	FvH4_5g01260
malus_domestica	MD04G1069700.v1.1 MD06G1071100.v1.1
prunus_persica	Prupe.5G088100_v2.0.a1 Prupe.5G088100_v2.0.a1
pyrus_communis	pycom04g06340
rosa_chinensis	RchiOBHm_Chr7g0199751
rosa_laevigata	RLG00000003773
rosa_multiflora	Rmu_sc0002748.1_g000022
rosa_roxburghii	Rroxscaffold_3G00256460
rosa_rugosa	Rorug07G0056000 Rorug07G0056100
rosa_samantha	Rh7AG181500 Rh7BG184300
rosa_wichuraiana	Rw7G015910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	219
AciI	CCGC	5 cut(s)	36, 57, 63, 217, 368
AclWI	GGATC	1 cut(s)	498
AcoI	YGGCCR	2 cut(s)	247, 719
AcuI	CTGAAG	2 cut(s)	710, 753
AcvI	CACGTG	1 cut(s)	136
AflII	CTTAAG	3 cut(s)	593, 640, 776
AflIII	ACRYGT	3 cut(s)	133, 135, 343
AgsI	TTSAA	4 cut(s)	325, 392, 583, 853
AjnI	CCWGG	1 cut(s)	667
AluBI	AGCT	4 cut(s)	193, 280, 497, 592
AluI	AGCT	4 cut(s)	193, 280, 497, 592
Alw21I	GWGCWC	2 cut(s)	282, 320
Alw26I	GTCTC	3 cut(s)	149, 666, 755
AlwI	GGATC	1 cut(s)	498
AoxI	GGCC	3 cut(s)	247, 375, 719
ApeKI	GCWGC	2 cut(s)	337, 703
Asp700I	GAANNNNTTC	1 cut(s)	567
AspLEI	GCGC	3 cut(s)	273, 816, 864
AsuC2I	CCSGG	1 cut(s)	149
AsuHPI	GGTGA	2 cut(s)	68, 440
BalI	TGGCCA	1 cut(s)	721
BanII	GRGCYC	1 cut(s)	282
BbrPI	CACGTG	1 cut(s)	136
Bbv12I	GWGCWC	2 cut(s)	282, 320
BbvI	GCAGC	2 cut(s)	349, 715
BccI	CCATC	4 cut(s)	19, 216, 243, 514
BceAI	ACGGC	4 cut(s)	160, 262, 344, 366
BcgI	CGANNNNNNTGC	2 cut(s)	120, 154
BciT130I	CCWGG	1 cut(s)	669
BcnI	CCSGG	1 cut(s)	149
BcoDI	GTCTC	3 cut(s)	149, 666, 755
BfmI	CTRYAG	2 cut(s)	335, 681
BfoI	RGCGCY	1 cut(s)	274
BfrI	CTTAAG	3 cut(s)	593, 640, 776
BglI	GCCNNNNNGGC	1 cut(s)	365
BglII	AGATCT	1 cut(s)	551
BisI	GCNGC	3 cut(s)	64, 338, 704
BlpI	GCTNAGC	1 cut(s)	189
BlsI	GCNGC	3 cut(s)	65, 339, 705
Bme1390I	CCNGG	2 cut(s)	149, 669
BmrFI	CCNGG	2 cut(s)	149, 669
BmsI	GCATC	2 cut(s)	175, 496
BpmI	CTGGAG	2 cut(s)	435, 690
Bpu1102I	GCTNAGC	1 cut(s)	189
BpuEI	CTTGAG	1 cut(s)	68
BpuMI	CCSGG	1 cut(s)	149
Bsa29I	ATCGAT	2 cut(s)	165, 183
BsaAI	YACGTR	1 cut(s)	136
BsaXI	ACNNNNNCTCC	2 cut(s)	195, 225
Bse1I	ACTGG	1 cut(s)	418
BseBI	CCWGG	1 cut(s)	669
BseCI	ATCGAT	2 cut(s)	165, 183
BseGI	GGATG	1 cut(s)	628
BseMII	CTCAG	4 cut(s)	41, 81, 203, 848
BseNI	ACTGG	1 cut(s)	418
BseRI	GAGGAG	1 cut(s)	203
BseXI	GCAGC	2 cut(s)	349, 715
Bsh1285I	CGRYCG	1 cut(s)	165
BshFI	GGCC	3 cut(s)	249, 377, 721
BshVI	ATCGAT	2 cut(s)	165, 183
BsiEI	CGRYCG	1 cut(s)	165
BsiHKAI	GWGCWC	2 cut(s)	282, 320
BsiSI	CCGG	1 cut(s)	148
BsmAI	GTCTC	3 cut(s)	149, 666, 755
BsnI	GGCC	3 cut(s)	249, 377, 721
Bsp1286I	GDGCHC	2 cut(s)	282, 320
Bsp143I	GATC	5 cut(s)	162, 166, 180, 490, 551
Bsp1720I	GCTNAGC	1 cut(s)	189
BspACI	CCGC	5 cut(s)	36, 57, 63, 217, 368
BspANI	GGCC	3 cut(s)	249, 377, 721
BspCNI	CTCAG	4 cut(s)	42, 82, 202, 847
BspDI	ATCGAT	2 cut(s)	165, 183
BspMAI	CTGCAG	1 cut(s)	339
BspPI	GGATC	1 cut(s)	498
BspTI	CTTAAG	3 cut(s)	593, 640, 776
BsrBI	CCGCTC	1 cut(s)	219
BsrI	ACTGG	1 cut(s)	418
BssMI	GATC	5 cut(s)	162, 166, 180, 490, 551
Bst2UI	CCWGG	1 cut(s)	669
Bst4CI	ACNGT	3 cut(s)	11, 201, 685
Bst6I	CTCTTC	1 cut(s)	753
BstAFI	CTTAAG	3 cut(s)	593, 640, 776
BstBAI	YACGTR	1 cut(s)	136
BstC8I	GCNNGC	3 cut(s)	379, 405, 499
BstDEI	CTNAG	4 cut(s)	50, 90, 189, 834
BstF5I	GGATG	1 cut(s)	628
BstH2I	RGCGCY	1 cut(s)	274
BstHHI	GCGC	3 cut(s)	273, 816, 864
BstKTI	GATC	5 cut(s)	165, 169, 183, 493, 554
BstMAI	GTCTC	3 cut(s)	149, 666, 755
BstMBI	GATC	5 cut(s)	162, 166, 180, 490, 551
BstMCI	CGRYCG	1 cut(s)	165
BstMWI	GCNNNNNNNGC	6 cut(s)	63, 277, 365, 374, 778, 820
BstNI	CCWGG	1 cut(s)	669
BstNSI	RCATGY	2 cut(s)	347, 472
BstSCI	CCNGG	2 cut(s)	147, 667
BstSFI	CTRYAG	2 cut(s)	335, 681
BstV1I	GCAGC	2 cut(s)	349, 715
BstX2I	RGATCY	1 cut(s)	551
BstYI	RGATCY	1 cut(s)	551
Bsu15I	ATCGAT	2 cut(s)	165, 183
BsuRI	GGCC	3 cut(s)	249, 377, 721
BsuTUI	ATCGAT	2 cut(s)	165, 183
BtsCI	GGATG	1 cut(s)	628
BtsIMutI	CAGTG	3 cut(s)	16, 690, 846
Cac8I	GCNNGC	3 cut(s)	379, 405, 499
CfoI	GCGC	3 cut(s)	273, 816, 864
ClaI	ATCGAT	2 cut(s)	165, 183
CspCI	CAANNNNNGTGG	2 cut(s)	735, 770
CviAII	CATG	7 cut(s)	266, 344, 356, 373, 469, 517, 559
DdeI	CTNAG	4 cut(s)	50, 90, 189, 834
DpnI	GATC	5 cut(s)	164, 168, 182, 492, 553
DpnII	GATC	5 cut(s)	162, 166, 180, 490, 551
EaeI	YGGCCR	2 cut(s)	247, 719
Eam1104I	CTCTTC	1 cut(s)	753
EarI	CTCTTC	1 cut(s)	753
EciI	GGCGGA	1 cut(s)	51
Ecl136II	GAGCTC	1 cut(s)	280
Eco24I	GRGCYC	1 cut(s)	282
Eco53kI	GAGCTC	1 cut(s)	280
Eco57I	CTGAAG	2 cut(s)	710, 753
Eco72I	CACGTG	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	667
EcoT38I	GRGCYC	1 cut(s)	282
FaeI	CATG	7 cut(s)	269, 347, 359, 376, 472, 520, 562
FatI	CATG	7 cut(s)	265, 343, 355, 372, 468, 516, 558
Fnu4HI	GCNGC	3 cut(s)	64, 338, 704
FokI	GGATG	1 cut(s)	635
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	3 cut(s)	64, 338, 704
GlaI	GCGC	3 cut(s)	272, 815, 863
GluI	GCNGC	3 cut(s)	64, 338, 704
GsuI	CTGGAG	2 cut(s)	435, 690
HaeII	RGCGCY	1 cut(s)	274
HaeIII	GGCC	3 cut(s)	249, 377, 721
HapII	CCGG	1 cut(s)	148
HhaI	GCGC	3 cut(s)	273, 816, 864
Hin1II	CATG	7 cut(s)	269, 347, 359, 376, 472, 520, 562
Hin6I	GCGC	3 cut(s)	271, 814, 862
HinP1I	GCGC	3 cut(s)	271, 814, 862
HinfI	GANTC	3 cut(s)	421, 531, 542
HpaII	CCGG	1 cut(s)	148
HphI	GGTGA	2 cut(s)	68, 440
Hpy188I	TCNGA	5 cut(s)	51, 91, 454, 505, 547
Hpy188III	TCNNGA	2 cut(s)	575, 612
Hpy99I	CGWCG	1 cut(s)	365
HpyAV	CCTTC	2 cut(s)	425, 645
HpyCH4III	ACNGT	3 cut(s)	11, 201, 685
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	5 cut(s)	4, 337, 403, 443, 772
HpyF10VI	GCNNNNNNNGC	6 cut(s)	63, 277, 365, 374, 778, 820
HpyF3I	CTNAG	4 cut(s)	50, 90, 189, 834
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	7 cut(s)	269, 347, 359, 376, 472, 520, 562
HspAI	GCGC	3 cut(s)	271, 814, 862
Kzo9I	GATC	5 cut(s)	162, 166, 180, 490, 551
LmnI	GCTCC	1 cut(s)	224
Lsp1109I	GCAGC	2 cut(s)	349, 715
LweI	GCATC	2 cut(s)	175, 496
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	2 cut(s)	201, 841
MalI	GATC	5 cut(s)	164, 168, 182, 492, 553
MbiI	CCGCTC	1 cut(s)	219
MboI	GATC	5 cut(s)	162, 166, 180, 490, 551
MboII	GAAGA	5 cut(s)	473, 595, 703, 746, 770
MfeI	CAATTG	2 cut(s)	790, 817
MflI	RGATCY	1 cut(s)	551
MhlI	GDGCHC	2 cut(s)	282, 320
MlsI	TGGCCA	1 cut(s)	721
MluCI	AATT	6 cut(s)	578, 615, 662, 694, 790, 817
MluNI	TGGCCA	1 cut(s)	721
MlyI	GAGTC	2 cut(s)	430, 525
MmeI	TCCRAC	1 cut(s)	752
MnlI	CCTC	8 cut(s)	32, 38, 117, 224, 238, 358, 613, 625
Mox20I	TGGCCA	1 cut(s)	721
MroXI	GAANNNNTTC	1 cut(s)	567
MscI	TGGCCA	1 cut(s)	721
MseI	TTAA	4 cut(s)	594, 606, 641, 777
MslI	CAYNNNNRTG	1 cut(s)	473
Msp20I	TGGCCA	1 cut(s)	721
MspCI	CTTAAG	3 cut(s)	593, 640, 776
MspI	CCGG	1 cut(s)	148
MspR9I	CCNGG	2 cut(s)	149, 669
MunI	CAATTG	2 cut(s)	790, 817
MvaI	CCWGG	1 cut(s)	669
MwoI	GCNNNNNNNGC	6 cut(s)	63, 277, 365, 374, 778, 820
NciI	CCSGG	1 cut(s)	149
NdeII	GATC	5 cut(s)	162, 166, 180, 490, 551
NlaIII	CATG	7 cut(s)	269, 347, 359, 376, 472, 520, 562
NmuCI	GTSAC	2 cut(s)	201, 841
NspI	RCATGY	2 cut(s)	347, 472
PciI	ACATGT	1 cut(s)	343
PdmI	GAANNNNTTC	1 cut(s)	567
PfeI	GAWTC	1 cut(s)	542
PkrI	GCNGC	3 cut(s)	65, 339, 705
Ple19I	CGATCG	1 cut(s)	165
PleI	GAGTC	2 cut(s)	429, 525
PmaCI	CACGTG	1 cut(s)	136
PmlI	CACGTG	1 cut(s)	136
PpsI	GAGTC	2 cut(s)	429, 525
Ppu21I	YACGTR	1 cut(s)	136
PscI	ACATGT	1 cut(s)	343
Psp124BI	GAGCTC	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	667
PspCI	CACGTG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	667
PstI	CTGCAG	1 cut(s)	339
PsuI	RGATCY	1 cut(s)	551
PvuI	CGATCG	1 cut(s)	165
RseI	CAYNNNNRTG	1 cut(s)	473
SacI	GAGCTC	1 cut(s)	282
SaqAI	TTAA	4 cut(s)	594, 606, 641, 777
SatI	GCNGC	3 cut(s)	64, 338, 704
Sau3AI	GATC	5 cut(s)	162, 166, 180, 490, 551
SchI	GAGTC	2 cut(s)	430, 525
ScrFI	CCNGG	2 cut(s)	149, 669
SduI	GDGCHC	2 cut(s)	282, 320
SfaNI	GCATC	2 cut(s)	175, 496
SfcI	CTRYAG	2 cut(s)	335, 681
SmiMI	CAYNNNNRTG	1 cut(s)	473
SmlI	CTYRAG	4 cut(s)	83, 593, 640, 776
SmoI	CTYRAG	4 cut(s)	83, 593, 640, 776
Sse9I	AATT	6 cut(s)	578, 615, 662, 694, 790, 817
SsiI	CCGC	5 cut(s)	36, 57, 63, 217, 368
SstI	GAGCTC	1 cut(s)	282
StyD4I	CCNGG	2 cut(s)	147, 667
TaaI	ACNGT	3 cut(s)	11, 201, 685
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	6 cut(s)	165, 183, 282, 363, 611, 857
TasI	AATT	6 cut(s)	578, 615, 662, 694, 790, 817
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	1 cut(s)	542
Tru1I	TTAA	4 cut(s)	594, 606, 641, 777
Tru9I	TTAA	4 cut(s)	594, 606, 641, 777
TscAI	CASTG	3 cut(s)	16, 690, 846
TseFI	GTSAC	2 cut(s)	201, 841
TseI	GCWGC	2 cut(s)	337, 703
Tsp45I	GTSAC	2 cut(s)	201, 841
TspDTI	ATGAA	3 cut(s)	344, 474, 787
TspRI	CASTG	3 cut(s)	16, 690, 846
Vha464I	CTTAAG	3 cut(s)	593, 640, 776
XceI	RCATGY	2 cut(s)	347, 472
XmnI	GAANNNNTTC	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.