Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0015425

Physical Location & Seq

Genomic Coordinates Reverse (-)

17202997 .. 17209061

Gene Structure 6065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1071100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGCAAGAATCCGGGTTGGGGATGATGGGTGGTGGCGGCATCGACGGTCATCATGACCAGCATAACCGGCAGCTCAAGGCTGAGATAGCCACACACCCTCTCTACGAGCAGCTCCTATCTGCTCACGTGTCGTGTCTTCGGGTGGCGACGCCAATCGATCAGTTGCCGCTCATAGACGCTCAGCTGTCTCAGTCGCACCACCTCCTGCGCTCTTACGCTTCTCAGCAGCAACATGGCCACTCAGTCTCCCCACACGAGCGCCAAGAGCTTGACAACTTTTTGGCACAATATCTGATAGTTTTGTGCTCTTTCAAAGAACAACTTCAACAACATGTCAGAGTCCATGCGGTTGAAGCTGTCATGGCCTGCCGTGAAATCGAAAGCAACTTGCAGGCTCTCACTGGAGTAAGTCTGGGTGAAGGTTCGGGTGCAACAATGTCCGACGATGAGGATGACATGCAGATGGATTTCCCTATGGATCAATCCGGCGCCGAAGGGCATGACATGATGGGATTTGGCCCTCTACTCCCAACCGAATCTGAGCGATCACTAATGGAAAGAGTTCGACAGGAATTGAAAATTGAGCTGAAGCAGGGTTTTAAGTCAAGAATTGAAGATGTAAGAGAGGAGATTTTAAGAAAAAGAAGGGCAGGGAAATTACCTGGGGACACAACTACAGTGTTGAAGAATTGGTGGCAGCAGCATTCTAAGTGGCCCTATCCAACTGAAGATGACAAGGCAAAGCTTGTGGAGGAGACAGGGTTGCAGCTAAAGCAGATAAACAATTGGTTCATCAATCAAAGGAAGCGCAACTGGCACAGCAACTCTCAATCAGTCACCTCTTTGAAGTCCAAGCGCAAACGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010087 GO:0010089 GO:0010191 GO:0010192 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903338 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

289

Amino Acids

32.85

Weight (kDa)

6.31

Isoelectric Point (pI)

59.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	25 - 66	2.3e-19	KNOX1 domain
KNOX2	PF03791	84 - 134	1.8e-17	KNOX2 domain
Homeobox_KN	PF05920	231 - 270	3.7e-19	Homeobox KN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62990
fragaria_vesca	FvH4_5g01260
malus_domestica	MD04G1069700.v1.1 MD06G1071100.v1.1
prunus_persica	Prupe.5G088100_v2.0.a1 Prupe.5G088100_v2.0.a1
pyrus_communis	pycom04g06340
rosa_chinensis	RchiOBHm_Chr7g0199751
rosa_laevigata	RLG00000003773
rosa_multiflora	Rmu_sc0002748.1_g000022
rosa_roxburghii	Rroxscaffold_3G00256460
rosa_rugosa	Rorug07G0056000 Rorug07G0056100
rosa_samantha	Rh7AG181500 Rh7BG184300
rosa_wichuraiana	Rw7G015910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	488
AccBSI	CCGCTC	1 cut(s)	169
AciI	CCGC	3 cut(s)	36, 167, 347
AclWI	GGATC	1 cut(s)	486
AcoI	YGGCCR	1 cut(s)	235
AcuI	CTGAAG	2 cut(s)	608, 747
AcvI	CACGTG	1 cut(s)	127
AcyI	GRCGYC	2 cut(s)	149, 489
AfiI	CCNNNNNNNGG	1 cut(s)	18
AflIII	ACRYGT	2 cut(s)	126, 331
AgsI	TTSAA	7 cut(s)	313, 326, 353, 577, 614, 685, 847
AjnI	CCWGG	1 cut(s)	661
AluBI	AGCT	8 cut(s)	73, 112, 184, 268, 356, 586, 745, 769
AluI	AGCT	8 cut(s)	73, 112, 184, 268, 356, 586, 745, 769
Alw21I	GWGCWC	1 cut(s)	308
Alw26I	GTCTC	3 cut(s)	192, 250, 749
AlwI	GGATC	1 cut(s)	486
AoxI	GGCC	4 cut(s)	235, 363, 517, 713
ApeKI	GCWGC	6 cut(s)	70, 109, 226, 697, 700, 766
Asp700I	GAANNNNTTC	2 cut(s)	321, 561
AspLEI	GCGC	5 cut(s)	210, 261, 491, 810, 858
AspS9I	GGNCC	2 cut(s)	518, 714
AsuC2I	CCSGG	1 cut(s)	13
AsuHPI	GGTGA	2 cut(s)	428, 829
BalI	TGGCCA	1 cut(s)	237
BanI	GGYRCC	1 cut(s)	488
BauI	CACGAG	1 cut(s)	254
BbrPI	CACGTG	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	128
Bbv12I	GWGCWC	1 cut(s)	308
BbvI	GCAGC	6 cut(s)	82, 121, 238, 709, 712, 778
BccI	CCATC	3 cut(s)	19, 457, 502
BceAI	ACGGC	1 cut(s)	354
BciT130I	CCWGG	1 cut(s)	663
BcnI	CCSGG	1 cut(s)	13
BcoDI	GTCTC	3 cut(s)	192, 250, 749
BfmI	CTRYAG	1 cut(s)	675
BfoI	RGCGCY	2 cut(s)	262, 492
BisI	GCNGC	8 cut(s)	37, 71, 110, 167, 227, 698, 701, 767
BlpI	GCTNAGC	1 cut(s)	180
BlsI	GCNGC	8 cut(s)	38, 72, 111, 168, 228, 699, 702, 768
Bme1390I	CCNGG	2 cut(s)	13, 663
BmgT120I	GGNCC	2 cut(s)	518, 714
BmiI	GGNNCC	1 cut(s)	490
BmrFI	CCNGG	2 cut(s)	13, 663
BmsI	GCATC	1 cut(s)	48
BpiI	GAAGAC	1 cut(s)	128
BpmI	CTGGAG	1 cut(s)	423
Bpu1102I	GCTNAGC	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	59
BpuMI	CCSGG	1 cut(s)	13
Bsa29I	ATCGAT	1 cut(s)	156
BsaAI	YACGTR	1 cut(s)	127
BsaHI	GRCGYC	2 cut(s)	149, 489
BsaJI	CCNNGG	1 cut(s)	662
BsaXI	ACNNNNNCTCC	4 cut(s)	230, 260, 746, 776
Bsc4I	CCNNNNNNNGG	1 cut(s)	18
Bse118I	RCCGGY	1 cut(s)	66
Bse1I	ACTGG	2 cut(s)	406, 818
BseBI	CCWGG	1 cut(s)	663
BseCI	ATCGAT	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	662
BseGI	GGATG	2 cut(s)	27, 457
BseLI	CCNNNNNNNGG	1 cut(s)	18
BseMII	CTCAG	6 cut(s)	72, 194, 203, 236, 255, 531
BseNI	ACTGG	2 cut(s)	406, 818
BseRI	GAGGAG	2 cut(s)	641, 767
BseXI	GCAGC	6 cut(s)	82, 121, 238, 709, 712, 778
BshFI	GGCC	4 cut(s)	237, 365, 519, 715
BshNI	GGYRCC	1 cut(s)	488
BshVI	ATCGAT	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	308
BsiSI	CCGG	3 cut(s)	12, 67, 486
BslFI	GGGAC	1 cut(s)	680
BslI	CCNNNNNNNGG	1 cut(s)	18
BsmAI	GTCTC	3 cut(s)	192, 250, 749
BsmFI	GGGAC	1 cut(s)	680
BsmI	GAATGC	1 cut(s)	703
BsnI	GGCC	4 cut(s)	237, 365, 519, 715
Bsp1286I	GDGCHC	1 cut(s)	308
Bsp143I	GATC	3 cut(s)	157, 478, 545
Bsp1720I	GCTNAGC	1 cut(s)	180
BspACI	CCGC	3 cut(s)	36, 167, 347
BspANI	GGCC	4 cut(s)	237, 365, 519, 715
BspCNI	CTCAG	6 cut(s)	73, 193, 202, 235, 254, 532
BspDI	ATCGAT	1 cut(s)	156
BspHI	TCATGA	1 cut(s)	52
BspLI	GGNNCC	1 cut(s)	490
BspPI	GGATC	1 cut(s)	486
BspT107I	GGYRCC	1 cut(s)	488
BsrBI	CCGCTC	1 cut(s)	169
BsrFI	RCCGGY	1 cut(s)	66
BsrI	ACTGG	2 cut(s)	406, 818
BssAI	RCCGGY	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	662
BssMI	GATC	3 cut(s)	157, 478, 545
BssNI	GRCGYC	2 cut(s)	149, 489
BssSI	CACGAG	1 cut(s)	254
Bst2BI	CACGAG	1 cut(s)	254
Bst2UI	CCWGG	1 cut(s)	663
Bst4CI	ACNGT	2 cut(s)	47, 679
BstACI	GRCGYC	2 cut(s)	149, 489
BstBAI	YACGTR	1 cut(s)	127
BstC8I	GCNNGC	2 cut(s)	367, 393
BstDEI	CTNAG	7 cut(s)	81, 180, 189, 222, 241, 540, 708
BstF5I	GGATG	2 cut(s)	27, 457
BstH2I	RGCGCY	2 cut(s)	262, 492
BstHHI	GCGC	5 cut(s)	210, 261, 491, 810, 858
BstKTI	GATC	3 cut(s)	160, 481, 548
BstMAI	GTCTC	3 cut(s)	192, 250, 749
BstMBI	GATC	3 cut(s)	157, 478, 545
BstMWI	GCNNNNNNNGC	7 cut(s)	67, 86, 265, 353, 362, 772, 814
BstNI	CCWGG	1 cut(s)	663
BstNSI	RCATGY	2 cut(s)	335, 460
BstSCI	CCNGG	2 cut(s)	11, 661
BstSFI	CTRYAG	1 cut(s)	675
BstV1I	GCAGC	6 cut(s)	82, 121, 238, 709, 712, 778
BstV2I	GAAGAC	1 cut(s)	128
Bsu15I	ATCGAT	1 cut(s)	156
BsuRI	GGCC	4 cut(s)	237, 365, 519, 715
BsuTUI	ATCGAT	1 cut(s)	156
BtsCI	GGATG	2 cut(s)	27, 457
BtsIMutI	CAGTG	2 cut(s)	399, 684
Cac8I	GCNNGC	2 cut(s)	367, 393
CciI	TCATGA	1 cut(s)	52
CfoI	GCGC	5 cut(s)	210, 261, 491, 810, 858
Cfr10I	RCCGGY	1 cut(s)	66
Cfr13I	GGNCC	2 cut(s)	518, 714
ClaI	ATCGAT	1 cut(s)	156
CseI	GACGC	2 cut(s)	157, 185
CspCI	CAANNNNNGTGG	2 cut(s)	729, 764
CviAII	CATG	8 cut(s)	53, 233, 332, 344, 361, 457, 500, 505
DdeI	CTNAG	7 cut(s)	81, 180, 189, 222, 241, 540, 708
DinI	GGCGCC	1 cut(s)	490
DpnI	GATC	3 cut(s)	159, 480, 547
DpnII	GATC	3 cut(s)	157, 478, 545
EaeI	YGGCCR	1 cut(s)	235
Eco57I	CTGAAG	2 cut(s)	608, 747
Eco72I	CACGTG	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	661
EgeI	GGCGCC	1 cut(s)	490
EheI	GGCGCC	1 cut(s)	490
FaeI	CATG	8 cut(s)	56, 236, 335, 347, 364, 460, 503, 508
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FaqI	GGGAC	1 cut(s)	680
FatI	CATG	8 cut(s)	52, 232, 331, 343, 360, 456, 499, 504
Fnu4HI	GCNGC	8 cut(s)	37, 71, 110, 167, 227, 698, 701, 767
FokI	GGATG	2 cut(s)	34, 464
Fsp4HI	GCNGC	8 cut(s)	37, 71, 110, 167, 227, 698, 701, 767
GlaI	GCGC	5 cut(s)	209, 260, 490, 809, 857
GluI	GCNGC	8 cut(s)	37, 71, 110, 167, 227, 698, 701, 767
GsuI	CTGGAG	1 cut(s)	423
HaeII	RGCGCY	2 cut(s)	262, 492
HaeIII	GGCC	4 cut(s)	237, 365, 519, 715
HapII	CCGG	3 cut(s)	12, 67, 486
HgaI	GACGC	2 cut(s)	157, 185
HhaI	GCGC	5 cut(s)	210, 261, 491, 810, 858
Hin1I	GRCGYC	2 cut(s)	149, 489
Hin1II	CATG	8 cut(s)	56, 236, 335, 347, 364, 460, 503, 508
Hin6I	GCGC	5 cut(s)	208, 259, 489, 808, 856
HinP1I	GCGC	5 cut(s)	208, 259, 489, 808, 856
HindIII	AAGCTT	1 cut(s)	743
HinfI	GANTC	3 cut(s)	8, 339, 536
HpaII	CCGG	3 cut(s)	12, 67, 486
HphI	GGTGA	2 cut(s)	428, 829
Hpy188I	TCNGA	4 cut(s)	294, 338, 442, 541
Hpy188III	TCNNGA	2 cut(s)	53, 606
Hpy99I	CGWCG	3 cut(s)	47, 151, 446
HpyAV	CCTTC	3 cut(s)	413, 488, 639
HpyCH4III	ACNGT	2 cut(s)	47, 679
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	5 cut(s)	4, 391, 431, 460, 766
HpyF10VI	GCNNNNNNNGC	7 cut(s)	67, 86, 265, 353, 362, 772, 814
HpyF3I	CTNAG	7 cut(s)	81, 180, 189, 222, 241, 540, 708
HpySE526I	ACGT	1 cut(s)	126
Hsp92I	GRCGYC	2 cut(s)	149, 489
Hsp92II	CATG	8 cut(s)	56, 236, 335, 347, 364, 460, 503, 508
HspAI	GCGC	5 cut(s)	208, 259, 489, 808, 856
KasI	GGCGCC	1 cut(s)	488
Kzo9I	GATC	3 cut(s)	157, 478, 545
LmnI	GCTCC	1 cut(s)	117
Lsp1109I	GCAGC	6 cut(s)	82, 121, 238, 709, 712, 778
LweI	GCATC	1 cut(s)	48
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	835
MalI	GATC	3 cut(s)	159, 480, 547
MbiI	CCGCTC	1 cut(s)	169
MboI	GATC	3 cut(s)	157, 478, 545
MboII	GAAGA	4 cut(s)	128, 626, 697, 740
MfeI	CAATTG	1 cut(s)	784
MhlI	GDGCHC	1 cut(s)	308
MlsI	TGGCCA	1 cut(s)	237
MluCI	AATT	6 cut(s)	572, 579, 609, 656, 688, 784
MluNI	TGGCCA	1 cut(s)	237
Mly113I	GGCGCC	1 cut(s)	489
MlyI	GAGTC	1 cut(s)	348
MmeI	TCCRAC	2 cut(s)	465, 746
MnlI	CCTC	7 cut(s)	108, 212, 442, 531, 619, 745, 850
Mox20I	TGGCCA	1 cut(s)	237
MroXI	GAANNNNTTC	2 cut(s)	321, 561
MscI	TGGCCA	1 cut(s)	237
MseI	TTAA	2 cut(s)	600, 635
MslI	CAYNNNNRTG	1 cut(s)	461
Msp20I	TGGCCA	1 cut(s)	237
MspA1I	CMGCKG	1 cut(s)	184
MspI	CCGG	3 cut(s)	12, 67, 486
MspR9I	CCNGG	2 cut(s)	13, 663
MunI	CAATTG	1 cut(s)	784
Mva1269I	GAATGC	1 cut(s)	703
MvaI	CCWGG	1 cut(s)	663
MwoI	GCNNNNNNNGC	7 cut(s)	67, 86, 265, 353, 362, 772, 814
NarI	GGCGCC	1 cut(s)	489
NciI	CCSGG	1 cut(s)	13
NdeII	GATC	3 cut(s)	157, 478, 545
NlaIII	CATG	8 cut(s)	56, 236, 335, 347, 364, 460, 503, 508
NlaIV	GGNNCC	1 cut(s)	490
NmuCI	GTSAC	1 cut(s)	835
NspI	RCATGY	2 cut(s)	335, 460
PagI	TCATGA	1 cut(s)	52
PciI	ACATGT	1 cut(s)	331
PctI	GAATGC	1 cut(s)	703
PdmI	GAANNNNTTC	2 cut(s)	321, 561
PfeI	GAWTC	2 cut(s)	8, 536
PkrI	GCNGC	8 cut(s)	38, 72, 111, 168, 228, 699, 702, 768
PleI	GAGTC	1 cut(s)	347
PluTI	GGCGCC	1 cut(s)	492
PmaCI	CACGTG	1 cut(s)	127
PmlI	CACGTG	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	347
Ppu21I	YACGTR	1 cut(s)	127
PscI	ACATGT	1 cut(s)	331
Psp6I	CCWGG	1 cut(s)	661
PspCI	CACGTG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	661
PspN4I	GGNNCC	1 cut(s)	490
PspPI	GGNCC	2 cut(s)	518, 714
PvuII	CAGCTG	1 cut(s)	184
RseI	CAYNNNNRTG	1 cut(s)	461
SaqAI	TTAA	2 cut(s)	600, 635
SatI	GCNGC	8 cut(s)	37, 71, 110, 167, 227, 698, 701, 767
Sau3AI	GATC	3 cut(s)	157, 478, 545
Sau96I	GGNCC	2 cut(s)	518, 714
SchI	GAGTC	1 cut(s)	348
ScrFI	CCNGG	2 cut(s)	13, 663
SduI	GDGCHC	1 cut(s)	308
SfaNI	GCATC	1 cut(s)	48
SfcI	CTRYAG	1 cut(s)	675
SfoI	GGCGCC	1 cut(s)	490
SmiMI	CAYNNNNRTG	1 cut(s)	461
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	6 cut(s)	572, 579, 609, 656, 688, 784
SsiI	CCGC	3 cut(s)	36, 167, 347
SspDI	GGCGCC	1 cut(s)	488
StyD4I	CCNGG	2 cut(s)	11, 661
TaaI	ACNGT	2 cut(s)	47, 679
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	4 cut(s)	42, 156, 378, 565
TasI	AATT	6 cut(s)	572, 579, 609, 656, 688, 784
TauI	GCSGC	2 cut(s)	39, 169
TfiI	GAWTC	2 cut(s)	8, 536
Tru1I	TTAA	2 cut(s)	600, 635
Tru9I	TTAA	2 cut(s)	600, 635
TscAI	CASTG	2 cut(s)	406, 684
TseFI	GTSAC	1 cut(s)	835
TseI	GCWGC	6 cut(s)	70, 109, 226, 697, 700, 766
Tsp45I	GTSAC	1 cut(s)	835
TspDTI	ATGAA	1 cut(s)	781
TspRI	CASTG	2 cut(s)	406, 684
XceI	RCATGY	2 cut(s)	335, 460
XmnI	GAANNNNTTC	2 cut(s)	321, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.