Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0015425

Physical Location & Seq

Genomic Coordinates Reverse (-)

16128090 .. 16131798

Gene Structure 3709 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG181500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGCAAGACAGTGGCTTGGGAATGATGGGTTCTGGCGGAGGTGGAGGTCTGAGTGGCGGTGGCGGCGGTGGTGACGACCATACTCACCAACTCAAGTCTGAGATTGCCACACATCCTCTCTACGAACAACTCCTGTCGGCACACGTGTCGTGTCTCCGGGTCGCCACGCCGATCGATCAGTTGCCGTTGATCGATGCTCAGCTCTCACAGTCACACCATCTCCTCCGCTCCTACGCCTCGCACCAACAACAGCACGGCCATTCTTTATCGCCCCATCAGCGCCAAGAGCTCGATAACTTCTTGTCGCAGTATTTGATAGTGTTGTGCTCGTTCAAAGAACAACTGCAGCAACATGTGAGAGTTCATGCCGTCGAGGCGGTCATGGCCTGCCGTGAGATTGAAAGCACCTTGCAGGCTCTTACTGGAGTGAGTCTGGGTGAAGGAACAGGTGCAACAATGTCAGATGATGAAGATGACATGCCAATGGATTTCTCTATGGATCAAGCTGGCTCTGATGCCCACGACATGATGGGATTTGGACTCCCTACTGAATCTGAAAGATCTCTCATGGAAAGAGTTCGTCAGGAATTGAAGATTGAGCTTAAGCAGGGTTTTAAGTCGAGAATTGAGGATGTAAGGGAGGAAATCTTAAGAAAAAGAAGGGCAGGGAAATTACCTGGAGACACAACTACAGTGCTGAAGAATTGGTGGCAGCAACACTCAAAGTGGCCATATCCAACTGAAGATGACAAGGCAAAACTTGTGGAAGAGACAGGGTTGCAGCTTAAGCAAATAAACAATTGGTTCATCAATCAAAGGAAGCGCAATTGGCACAGCAACTCTCAGTCAGTGACTTCTTTGAAGTCGAAGCGCAAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010087 GO:0010089 GO:0010191 GO:0010192 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903338 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

293

Amino Acids

32.9

Weight (kDa)

6.31

Isoelectric Point (pI)

59.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	31 - 72	6.6e-19	KNOX1 domain
KNOX2	PF03791	91 - 141	8.4e-17	KNOX2 domain
Homeobox_KN	PF05920	236 - 275	3.8e-19	Homeobox KN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62990
fragaria_vesca	FvH4_5g01260
malus_domestica	MD04G1069700.v1.1 MD06G1071100.v1.1
prunus_persica	Prupe.5G088100_v2.0.a1 Prupe.5G088100_v2.0.a1
pyrus_communis	pycom04g06340
rosa_chinensis	RchiOBHm_Chr7g0199751
rosa_laevigata	RLG00000003773
rosa_multiflora	Rmu_sc0002748.1_g000022
rosa_roxburghii	Rroxscaffold_3G00256460
rosa_rugosa	Rorug07G0056000 Rorug07G0056100
rosa_samantha	Rh7AG181500 Rh7BG184300
rosa_wichuraiana	Rw7G015910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	228
AciI	CCGC	6 cut(s)	36, 57, 63, 66, 226, 377
AclWI	GGATC	1 cut(s)	507
AcoI	YGGCCR	2 cut(s)	256, 728
AcuI	CTGAAG	2 cut(s)	719, 762
AcvI	CACGTG	1 cut(s)	145
AflII	CTTAAG	3 cut(s)	602, 649, 785
AflIII	ACRYGT	3 cut(s)	142, 144, 352
AgsI	TTSAA	4 cut(s)	334, 401, 592, 862
AjnI	CCWGG	1 cut(s)	676
AluBI	AGCT	5 cut(s)	202, 289, 506, 601, 784
AluI	AGCT	5 cut(s)	202, 289, 506, 601, 784
Alw21I	GWGCWC	2 cut(s)	291, 329
Alw26I	GTCTC	3 cut(s)	158, 675, 764
AlwI	GGATC	1 cut(s)	507
AoxI	GGCC	3 cut(s)	256, 384, 728
ApeKI	GCWGC	3 cut(s)	346, 712, 781
Asp700I	GAANNNNTTC	1 cut(s)	576
AspLEI	GCGC	3 cut(s)	282, 825, 873
AsuC2I	CCSGG	1 cut(s)	158
AsuHPI	GGTGA	3 cut(s)	77, 83, 449
BalI	TGGCCA	1 cut(s)	730
BanII	GRGCYC	1 cut(s)	291
BbrPI	CACGTG	1 cut(s)	145
Bbv12I	GWGCWC	2 cut(s)	291, 329
BbvI	GCAGC	3 cut(s)	358, 724, 793
BccI	CCATC	4 cut(s)	19, 225, 282, 523
BceAI	ACGGC	4 cut(s)	169, 271, 353, 375
BcgI	CGANNNNNNTGC	2 cut(s)	129, 163
BciT130I	CCWGG	1 cut(s)	678
BcnI	CCSGG	1 cut(s)	158
BcoDI	GTCTC	3 cut(s)	158, 675, 764
BfmI	CTRYAG	2 cut(s)	344, 690
BfoI	RGCGCY	1 cut(s)	283
BfrI	CTTAAG	3 cut(s)	602, 649, 785
BglI	GCCNNNNNGGC	1 cut(s)	374
BglII	AGATCT	1 cut(s)	560
BisI	GCNGC	4 cut(s)	64, 347, 713, 782
BlpI	GCTNAGC	1 cut(s)	198
BlsI	GCNGC	4 cut(s)	65, 348, 714, 783
Bme1390I	CCNGG	2 cut(s)	158, 678
BmrFI	CCNGG	2 cut(s)	158, 678
BmsI	GCATC	2 cut(s)	184, 505
BpmI	CTGGAG	2 cut(s)	444, 699
Bpu1102I	GCTNAGC	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	77
BpuMI	CCSGG	1 cut(s)	158
Bsa29I	ATCGAT	2 cut(s)	174, 192
BsaAI	YACGTR	1 cut(s)	145
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
Bse1I	ACTGG	1 cut(s)	427
BseBI	CCWGG	1 cut(s)	678
BseCI	ATCGAT	2 cut(s)	174, 192
BseGI	GGATG	2 cut(s)	112, 637
BseMII	CTCAG	4 cut(s)	41, 90, 212, 857
BseNI	ACTGG	1 cut(s)	427
BseRI	GAGGAG	1 cut(s)	212
BseXI	GCAGC	3 cut(s)	358, 724, 793
Bsh1285I	CGRYCG	1 cut(s)	174
BshFI	GGCC	3 cut(s)	258, 386, 730
BshVI	ATCGAT	2 cut(s)	174, 192
BsiEI	CGRYCG	1 cut(s)	174
BsiHKAI	GWGCWC	2 cut(s)	291, 329
BsiSI	CCGG	1 cut(s)	157
BsmAI	GTCTC	3 cut(s)	158, 675, 764
BsnI	GGCC	3 cut(s)	258, 386, 730
Bsp1286I	GDGCHC	2 cut(s)	291, 329
Bsp143I	GATC	5 cut(s)	171, 175, 189, 499, 560
Bsp1720I	GCTNAGC	1 cut(s)	198
BspACI	CCGC	6 cut(s)	36, 57, 63, 66, 226, 377
BspANI	GGCC	3 cut(s)	258, 386, 730
BspCNI	CTCAG	4 cut(s)	42, 91, 211, 856
BspDI	ATCGAT	2 cut(s)	174, 192
BspMAI	CTGCAG	1 cut(s)	348
BspPI	GGATC	1 cut(s)	507
BspTI	CTTAAG	3 cut(s)	602, 649, 785
BsrBI	CCGCTC	1 cut(s)	228
BsrI	ACTGG	1 cut(s)	427
BssMI	GATC	5 cut(s)	171, 175, 189, 499, 560
Bst2UI	CCWGG	1 cut(s)	678
Bst4CI	ACNGT	3 cut(s)	11, 210, 694
Bst6I	CTCTTC	1 cut(s)	762
BstAFI	CTTAAG	3 cut(s)	602, 649, 785
BstBAI	YACGTR	1 cut(s)	145
BstC8I	GCNNGC	3 cut(s)	388, 414, 508
BstDEI	CTNAG	4 cut(s)	50, 99, 198, 843
BstF5I	GGATG	2 cut(s)	112, 637
BstH2I	RGCGCY	1 cut(s)	283
BstHHI	GCGC	3 cut(s)	282, 825, 873
BstKTI	GATC	5 cut(s)	174, 178, 192, 502, 563
BstMAI	GTCTC	3 cut(s)	158, 675, 764
BstMBI	GATC	5 cut(s)	171, 175, 189, 499, 560
BstMCI	CGRYCG	1 cut(s)	174
BstMWI	GCNNNNNNNGC	7 cut(s)	63, 277, 286, 374, 383, 787, 829
BstNI	CCWGG	1 cut(s)	678
BstNSI	RCATGY	2 cut(s)	356, 481
BstSCI	CCNGG	2 cut(s)	156, 676
BstSFI	CTRYAG	2 cut(s)	344, 690
BstV1I	GCAGC	3 cut(s)	358, 724, 793
BstX2I	RGATCY	1 cut(s)	560
BstYI	RGATCY	1 cut(s)	560
Bsu15I	ATCGAT	2 cut(s)	174, 192
BsuRI	GGCC	3 cut(s)	258, 386, 730
BsuTUI	ATCGAT	2 cut(s)	174, 192
BtsCI	GGATG	2 cut(s)	112, 637
BtsIMutI	CAGTG	3 cut(s)	16, 699, 855
Cac8I	GCNNGC	3 cut(s)	388, 414, 508
CfoI	GCGC	3 cut(s)	282, 825, 873
ClaI	ATCGAT	2 cut(s)	174, 192
CspCI	CAANNNNNGTGG	2 cut(s)	744, 779
CviAII	CATG	6 cut(s)	353, 365, 382, 478, 526, 568
DdeI	CTNAG	4 cut(s)	50, 99, 198, 843
DpnI	GATC	5 cut(s)	173, 177, 191, 501, 562
DpnII	GATC	5 cut(s)	171, 175, 189, 499, 560
EaeI	YGGCCR	2 cut(s)	256, 728
Eam1104I	CTCTTC	1 cut(s)	762
EarI	CTCTTC	1 cut(s)	762
EciI	GGCGGA	1 cut(s)	51
Ecl136II	GAGCTC	1 cut(s)	289
Eco24I	GRGCYC	1 cut(s)	291
Eco53kI	GAGCTC	1 cut(s)	289
Eco57I	CTGAAG	2 cut(s)	719, 762
Eco72I	CACGTG	1 cut(s)	145
EcoICRI	GAGCTC	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	676
EcoT38I	GRGCYC	1 cut(s)	291
FaeI	CATG	6 cut(s)	356, 368, 385, 481, 529, 571
FaiI	YATR	9 cut(s)	81, 354, 366, 383, 479, 497, 527, 569, 733
FatI	CATG	6 cut(s)	352, 364, 381, 477, 525, 567
Fnu4HI	GCNGC	4 cut(s)	64, 347, 713, 782
FokI	GGATG	2 cut(s)	99, 644
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	4 cut(s)	64, 347, 713, 782
GlaI	GCGC	3 cut(s)	281, 824, 872
GluI	GCNGC	4 cut(s)	64, 347, 713, 782
GsuI	CTGGAG	2 cut(s)	444, 699
HaeII	RGCGCY	1 cut(s)	283
HaeIII	GGCC	3 cut(s)	258, 386, 730
HapII	CCGG	1 cut(s)	157
HhaI	GCGC	3 cut(s)	282, 825, 873
Hin1II	CATG	6 cut(s)	356, 368, 385, 481, 529, 571
Hin6I	GCGC	3 cut(s)	280, 823, 871
HinP1I	GCGC	3 cut(s)	280, 823, 871
HinfI	GANTC	3 cut(s)	430, 540, 551
HpaII	CCGG	1 cut(s)	157
HphI	GGTGA	3 cut(s)	77, 83, 449
Hpy188I	TCNGA	5 cut(s)	51, 100, 463, 514, 556
Hpy188III	TCNNGA	2 cut(s)	584, 621
Hpy99I	CGWCG	1 cut(s)	374
HpyAV	CCTTC	2 cut(s)	434, 654
HpyCH4III	ACNGT	3 cut(s)	11, 210, 694
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	5 cut(s)	4, 346, 412, 452, 781
HpyF10VI	GCNNNNNNNGC	7 cut(s)	63, 277, 286, 374, 383, 787, 829
HpyF3I	CTNAG	4 cut(s)	50, 99, 198, 843
HpySE526I	ACGT	1 cut(s)	144
Hsp92II	CATG	6 cut(s)	356, 368, 385, 481, 529, 571
HspAI	GCGC	3 cut(s)	280, 823, 871
Kzo9I	GATC	5 cut(s)	171, 175, 189, 499, 560
LmnI	GCTCC	1 cut(s)	233
Lsp1109I	GCAGC	3 cut(s)	358, 724, 793
LweI	GCATC	2 cut(s)	184, 505
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	3 cut(s)	71, 210, 850
MalI	GATC	5 cut(s)	173, 177, 191, 501, 562
MbiI	CCGCTC	1 cut(s)	228
MboI	GATC	5 cut(s)	171, 175, 189, 499, 560
MboII	GAAGA	5 cut(s)	482, 604, 712, 755, 779
MfeI	CAATTG	2 cut(s)	799, 826
MflI	RGATCY	1 cut(s)	560
MhlI	GDGCHC	2 cut(s)	291, 329
MlsI	TGGCCA	1 cut(s)	730
MluCI	AATT	6 cut(s)	587, 624, 671, 703, 799, 826
MluNI	TGGCCA	1 cut(s)	730
MlyI	GAGTC	2 cut(s)	439, 534
MmeI	TCCRAC	1 cut(s)	761
MnlI	CCTC	8 cut(s)	32, 38, 126, 233, 247, 367, 622, 634
Mox20I	TGGCCA	1 cut(s)	730
MroXI	GAANNNNTTC	1 cut(s)	576
MscI	TGGCCA	1 cut(s)	730
MseI	TTAA	4 cut(s)	603, 615, 650, 786
MslI	CAYNNNNRTG	1 cut(s)	482
Msp20I	TGGCCA	1 cut(s)	730
MspCI	CTTAAG	3 cut(s)	602, 649, 785
MspI	CCGG	1 cut(s)	157
MspR9I	CCNGG	2 cut(s)	158, 678
MunI	CAATTG	2 cut(s)	799, 826
MvaI	CCWGG	1 cut(s)	678
MwoI	GCNNNNNNNGC	7 cut(s)	63, 277, 286, 374, 383, 787, 829
NciI	CCSGG	1 cut(s)	158
NdeII	GATC	5 cut(s)	171, 175, 189, 499, 560
NlaIII	CATG	6 cut(s)	356, 368, 385, 481, 529, 571
NmuCI	GTSAC	3 cut(s)	71, 210, 850
NspI	RCATGY	2 cut(s)	356, 481
PciI	ACATGT	1 cut(s)	352
PdmI	GAANNNNTTC	1 cut(s)	576
PfeI	GAWTC	1 cut(s)	551
PkrI	GCNGC	4 cut(s)	65, 348, 714, 783
Ple19I	CGATCG	1 cut(s)	174
PleI	GAGTC	2 cut(s)	438, 534
PmaCI	CACGTG	1 cut(s)	145
PmlI	CACGTG	1 cut(s)	145
PpsI	GAGTC	2 cut(s)	438, 534
Ppu21I	YACGTR	1 cut(s)	145
PscI	ACATGT	1 cut(s)	352
Psp124BI	GAGCTC	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	676
PspCI	CACGTG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	676
PstI	CTGCAG	1 cut(s)	348
PsuI	RGATCY	1 cut(s)	560
PvuI	CGATCG	1 cut(s)	174
RseI	CAYNNNNRTG	1 cut(s)	482
SacI	GAGCTC	1 cut(s)	291
SaqAI	TTAA	4 cut(s)	603, 615, 650, 786
SatI	GCNGC	4 cut(s)	64, 347, 713, 782
Sau3AI	GATC	5 cut(s)	171, 175, 189, 499, 560
SchI	GAGTC	2 cut(s)	439, 534
ScrFI	CCNGG	2 cut(s)	158, 678
SduI	GDGCHC	2 cut(s)	291, 329
SfaNI	GCATC	2 cut(s)	184, 505
SfcI	CTRYAG	2 cut(s)	344, 690
SmiMI	CAYNNNNRTG	1 cut(s)	482
SmlI	CTYRAG	4 cut(s)	92, 602, 649, 785
SmoI	CTYRAG	4 cut(s)	92, 602, 649, 785
Sse9I	AATT	6 cut(s)	587, 624, 671, 703, 799, 826
SsiI	CCGC	6 cut(s)	36, 57, 63, 66, 226, 377
SstI	GAGCTC	1 cut(s)	291
StyD4I	CCNGG	2 cut(s)	156, 676
TaaI	ACNGT	3 cut(s)	11, 210, 694
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	6 cut(s)	174, 192, 291, 372, 620, 866
TasI	AATT	6 cut(s)	587, 624, 671, 703, 799, 826
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	1 cut(s)	551
Tru1I	TTAA	4 cut(s)	603, 615, 650, 786
Tru9I	TTAA	4 cut(s)	603, 615, 650, 786
TscAI	CASTG	3 cut(s)	16, 699, 855
TseFI	GTSAC	3 cut(s)	71, 210, 850
TseI	GCWGC	3 cut(s)	346, 712, 781
Tsp45I	GTSAC	3 cut(s)	71, 210, 850
TspDTI	ATGAA	3 cut(s)	353, 483, 796
TspRI	CASTG	3 cut(s)	16, 699, 855
Vha464I	CTTAAG	3 cut(s)	602, 649, 785
XceI	RCATGY	2 cut(s)	356, 481
XmnI	GAANNNNTTC	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.