Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0015425

Physical Location & Seq

Genomic Coordinates Reverse (-)

6361317 .. 6367639

Gene Structure 6323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g06340.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGCAAGAATCCGGGTTGGGGATGATGGTTGGTGGCGGCGGCGACGGTCATCATGACCAGCATAACCGGCAGCTCAAGGCTGAGATAGCCACGCACCCTCTTTACGAGCAGCTCCTGTCTGCACACGTGTCCTGTCTCAGGGTGGCGACGCCAATCGATCAGTTGCCAGTGCTCATAGACGCTCAGCTGTCTCAGTCGCACCACCTCCTGCGCTCTTACGCTTCTCAGCAGCAGCATGGCCAGTCAGTCTCCCCACACGAGCGCCAAGAGCTTGACAACTTTTTGGCACAATATCTGATAGTTTTGTGCTCTTTCAAAGAACATCTTCAACAACATGTCAGAGTCCATGCGGTTGAAGCTGTCATGGCCTGCCGTGAAATCGAAAGCAACTTGCAGGCTCTTACTGGAGTGAGTCTGGGCGAAGTTTCGGGTGCAACAATGTCCGACGATGAGGATGACATGCCGATGGATTTCACAATGGATCAATCCGGCGGCGAAGGGCATGATATGATGGGATTTGGCCCCCTACTCCCAACTGAATCTGAACGATCGTTAATGGAAAGAGTTCGACAGGAATTGAAGATTGAGCTGAAGCAGGGATTTAAGTCAAGAATTGAAGATGTAAGAGAGGAAATTCTAAGAAAAAGAAGGGCAGGGAAATTACCTGGGGACACAACTACGGTGTTGAAGAATTGGTGGCAGCAACACTCTAAGTGGCCCTACCCAACTGAAGATGACAAGGCAAAGCTTGTGGAGGAGACAGGGTTGCAGCTGAAGCAGATAAACAACTGGTTCATTAACCAAAGGAAGCGGAACTGGCACAGCAACTCTCAATCAGTCACCTCCTTAAAGTCCAAGCGCAAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010087 GO:0010089 GO:0010191 GO:0010192 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903338 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

290

Amino Acids

32.93

Weight (kDa)

6.31

Isoelectric Point (pI)

62.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62990
fragaria_vesca	FvH4_5g01260
malus_domestica	MD04G1069700.v1.1 MD06G1071100.v1.1
prunus_persica	Prupe.5G088100_v2.0.a1 Prupe.5G088100_v2.0.a1
pyrus_communis	pycom04g06340
rosa_chinensis	RchiOBHm_Chr7g0199751
rosa_laevigata	RLG00000003773
rosa_multiflora	Rmu_sc0002748.1_g000022
rosa_roxburghii	Rroxscaffold_3G00256460
rosa_rugosa	Rorug07G0056000 Rorug07G0056100
rosa_samantha	Rh7AG181500 Rh7BG184300
rosa_wichuraiana	Rw7G015910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	36, 39, 350, 492, 811
AclWI	GGATC	1 cut(s)	489
AcoI	YGGCCR	1 cut(s)	238
AcsI	RAATTY	1 cut(s)	633
AcuI	CTGAAG	3 cut(s)	611, 750, 794
AcvI	CACGTG	1 cut(s)	127
AcyI	GRCGYC	1 cut(s)	149
AfiI	CCNNNNNNNGG	2 cut(s)	18, 138
AflIII	ACRYGT	3 cut(s)	124, 126, 334
AgsI	TTSAA	6 cut(s)	316, 329, 356, 580, 617, 688
AjnI	CCWGG	1 cut(s)	664
AluBI	AGCT	8 cut(s)	73, 112, 187, 271, 359, 589, 748, 772
AluI	AGCT	8 cut(s)	73, 112, 187, 271, 359, 589, 748, 772
Alw21I	GWGCWC	2 cut(s)	174, 311
Alw26I	GTCTC	4 cut(s)	140, 195, 253, 752
AlwI	GGATC	1 cut(s)	489
AlwNI	CAGNNNCTG	1 cut(s)	115
AoxI	GGCC	4 cut(s)	238, 366, 520, 716
ApeKI	GCWGC	6 cut(s)	70, 109, 229, 232, 700, 769
ApoI	RAATTY	1 cut(s)	633
Asp700I	GAANNNNTTC	2 cut(s)	324, 564
AspLEI	GCGC	3 cut(s)	213, 264, 861
AspS9I	GGNCC	2 cut(s)	521, 717
AsuC2I	CCSGG	1 cut(s)	13
AsuHPI	GGTGA	1 cut(s)	832
BalI	TGGCCA	1 cut(s)	240
BauI	CACGAG	1 cut(s)	257
BbrPI	CACGTG	1 cut(s)	127
Bbv12I	GWGCWC	2 cut(s)	174, 311
BbvI	GCAGC	6 cut(s)	82, 121, 241, 244, 712, 781
BccI	CCATC	3 cut(s)	19, 460, 505
BceAI	ACGGC	1 cut(s)	357
BciT130I	CCWGG	1 cut(s)	666
BcnI	CCSGG	1 cut(s)	13
BcoDI	GTCTC	4 cut(s)	140, 195, 253, 752
BfoI	RGCGCY	1 cut(s)	265
BisI	GCNGC	9 cut(s)	37, 40, 71, 110, 230, 233, 493, 701, 770
BlpI	GCTNAGC	1 cut(s)	183
BlsI	GCNGC	9 cut(s)	38, 41, 72, 111, 231, 234, 494, 702, 771
Bme1390I	CCNGG	2 cut(s)	13, 666
BmgT120I	GGNCC	2 cut(s)	521, 717
BmiI	GGNNCC	1 cut(s)	523
BmrFI	CCNGG	2 cut(s)	13, 666
BpmI	CTGGAG	1 cut(s)	426
Bpu1102I	GCTNAGC	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	59
BpuMI	CCSGG	1 cut(s)	13
Bsa29I	ATCGAT	1 cut(s)	156
BsaAI	YACGTR	1 cut(s)	127
BsaHI	GRCGYC	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	665
BsaXI	ACNNNNNCTCC	2 cut(s)	749, 779
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 138
Bse118I	RCCGGY	1 cut(s)	66
Bse1I	ACTGG	5 cut(s)	167, 241, 409, 794, 821
BseBI	CCWGG	1 cut(s)	666
BseCI	ATCGAT	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	665
BseGI	GGATG	2 cut(s)	27, 460
BseLI	CCNNNNNNNGG	2 cut(s)	18, 138
BseMII	CTCAG	5 cut(s)	72, 151, 197, 206, 239
BseNI	ACTGG	5 cut(s)	167, 241, 409, 794, 821
BseRI	GAGGAG	1 cut(s)	770
BseXI	GCAGC	6 cut(s)	82, 121, 241, 244, 712, 781
BsgI	GTGCAG	1 cut(s)	105
Bsh1285I	CGRYCG	1 cut(s)	551
BshFI	GGCC	4 cut(s)	240, 368, 522, 718
BshVI	ATCGAT	1 cut(s)	156
BsiEI	CGRYCG	1 cut(s)	551
BsiHKAI	GWGCWC	2 cut(s)	174, 311
BsiSI	CCGG	3 cut(s)	12, 67, 489
BslFI	GGGAC	1 cut(s)	683
BslI	CCNNNNNNNGG	2 cut(s)	18, 138
BsmAI	GTCTC	4 cut(s)	140, 195, 253, 752
BsmFI	GGGAC	1 cut(s)	683
BsnI	GGCC	4 cut(s)	240, 368, 522, 718
Bsp1286I	GDGCHC	2 cut(s)	174, 311
Bsp143I	GATC	3 cut(s)	157, 481, 548
Bsp1720I	GCTNAGC	1 cut(s)	183
BspACI	CCGC	5 cut(s)	36, 39, 350, 492, 811
BspANI	GGCC	4 cut(s)	240, 368, 522, 718
BspCNI	CTCAG	5 cut(s)	73, 150, 196, 205, 238
BspDI	ATCGAT	1 cut(s)	156
BspHI	TCATGA	1 cut(s)	52
BspLI	GGNNCC	1 cut(s)	523
BspPI	GGATC	1 cut(s)	489
BsrFI	RCCGGY	1 cut(s)	66
BsrI	ACTGG	5 cut(s)	167, 241, 409, 794, 821
BssAI	RCCGGY	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	665
BssMI	GATC	3 cut(s)	157, 481, 548
BssNI	GRCGYC	1 cut(s)	149
BssSI	CACGAG	1 cut(s)	257
Bst2BI	CACGAG	1 cut(s)	257
Bst2UI	CCWGG	1 cut(s)	666
Bst4CI	ACNGT	2 cut(s)	47, 682
BstACI	GRCGYC	1 cut(s)	149
BstBAI	YACGTR	1 cut(s)	127
BstC8I	GCNNGC	2 cut(s)	370, 396
BstDEI	CTNAG	7 cut(s)	81, 137, 183, 192, 225, 638, 711
BstENI	CCTNNNNNAGG	1 cut(s)	136
BstF5I	GGATG	2 cut(s)	27, 460
BstH2I	RGCGCY	1 cut(s)	265
BstHHI	GCGC	3 cut(s)	213, 264, 861
BstKTI	GATC	3 cut(s)	160, 484, 551
BstMAI	GTCTC	4 cut(s)	140, 195, 253, 752
BstMBI	GATC	3 cut(s)	157, 481, 548
BstMCI	CGRYCG	1 cut(s)	551
BstMWI	GCNNNNNNNGC	7 cut(s)	67, 86, 268, 356, 365, 775, 817
BstNI	CCWGG	1 cut(s)	666
BstNSI	RCATGY	2 cut(s)	338, 463
BstSCI	CCNGG	2 cut(s)	11, 664
BstV1I	GCAGC	6 cut(s)	82, 121, 241, 244, 712, 781
Bsu15I	ATCGAT	1 cut(s)	156
BsuRI	GGCC	4 cut(s)	240, 368, 522, 718
BsuTUI	ATCGAT	1 cut(s)	156
BtsCI	GGATG	2 cut(s)	27, 460
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	2 cut(s)	370, 396
CaiI	CAGNNNCTG	1 cut(s)	115
CciI	TCATGA	1 cut(s)	52
CfoI	GCGC	3 cut(s)	213, 264, 861
Cfr10I	RCCGGY	1 cut(s)	66
Cfr13I	GGNCC	2 cut(s)	521, 717
ClaI	ATCGAT	1 cut(s)	156
CseI	GACGC	2 cut(s)	157, 188
CspCI	CAANNNNNGTGG	2 cut(s)	732, 767
CviAII	CATG	7 cut(s)	53, 236, 335, 347, 364, 460, 503
DdeI	CTNAG	7 cut(s)	81, 137, 183, 192, 225, 638, 711
DpnI	GATC	3 cut(s)	159, 483, 550
DpnII	GATC	3 cut(s)	157, 481, 548
EaeI	YGGCCR	1 cut(s)	238
Eco57I	CTGAAG	3 cut(s)	611, 750, 794
Eco72I	CACGTG	1 cut(s)	127
EcoNI	CCTNNNNNAGG	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	664
FaeI	CATG	7 cut(s)	56, 239, 338, 350, 367, 463, 506
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FaqI	GGGAC	1 cut(s)	683
FatI	CATG	7 cut(s)	52, 235, 334, 346, 363, 459, 502
Fnu4HI	GCNGC	9 cut(s)	37, 40, 71, 110, 230, 233, 493, 701, 770
FokI	GGATG	2 cut(s)	34, 467
Fsp4HI	GCNGC	9 cut(s)	37, 40, 71, 110, 230, 233, 493, 701, 770
GlaI	GCGC	3 cut(s)	212, 263, 860
GluI	GCNGC	9 cut(s)	37, 40, 71, 110, 230, 233, 493, 701, 770
GsuI	CTGGAG	1 cut(s)	426
HaeII	RGCGCY	1 cut(s)	265
HaeIII	GGCC	4 cut(s)	240, 368, 522, 718
HapII	CCGG	3 cut(s)	12, 67, 489
HgaI	GACGC	2 cut(s)	157, 188
HhaI	GCGC	3 cut(s)	213, 264, 861
Hin1I	GRCGYC	1 cut(s)	149
Hin1II	CATG	7 cut(s)	56, 239, 338, 350, 367, 463, 506
Hin6I	GCGC	3 cut(s)	211, 262, 859
HinP1I	GCGC	3 cut(s)	211, 262, 859
HindIII	AAGCTT	1 cut(s)	746
HinfI	GANTC	4 cut(s)	8, 342, 412, 539
HpaII	CCGG	3 cut(s)	12, 67, 489
HphI	GGTGA	1 cut(s)	832
Hpy188I	TCNGA	4 cut(s)	297, 341, 445, 544
Hpy188III	TCNNGA	2 cut(s)	53, 609
Hpy99I	CGWCG	3 cut(s)	47, 151, 449
HpyAV	CCTTC	2 cut(s)	491, 642
HpyCH4III	ACNGT	2 cut(s)	47, 682
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	5 cut(s)	4, 122, 394, 434, 769
HpyF10VI	GCNNNNNNNGC	7 cut(s)	67, 86, 268, 356, 365, 775, 817
HpyF3I	CTNAG	7 cut(s)	81, 137, 183, 192, 225, 638, 711
HpySE526I	ACGT	1 cut(s)	126
Hsp92I	GRCGYC	1 cut(s)	149
Hsp92II	CATG	7 cut(s)	56, 239, 338, 350, 367, 463, 506
HspAI	GCGC	3 cut(s)	211, 262, 859
Kzo9I	GATC	3 cut(s)	157, 481, 548
LmnI	GCTCC	1 cut(s)	117
Lsp1109I	GCAGC	6 cut(s)	82, 121, 241, 244, 712, 781
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	838
MalI	GATC	3 cut(s)	159, 483, 550
MboI	GATC	3 cut(s)	157, 481, 548
MboII	GAAGA	5 cut(s)	317, 592, 629, 700, 743
MhlI	GDGCHC	2 cut(s)	174, 311
MlsI	TGGCCA	1 cut(s)	240
MluCI	AATT	5 cut(s)	575, 612, 633, 659, 691
MluNI	TGGCCA	1 cut(s)	240
MlyI	GAGTC	2 cut(s)	351, 421
MmeI	TCCRAC	1 cut(s)	468
MnlI	CCTC	6 cut(s)	108, 215, 445, 622, 748, 853
Mox20I	TGGCCA	1 cut(s)	240
MroXI	GAANNNNTTC	2 cut(s)	324, 564
MscI	TGGCCA	1 cut(s)	240
MseI	TTAA	4 cut(s)	554, 603, 798, 848
MslI	CAYNNNNRTG	1 cut(s)	464
Msp20I	TGGCCA	1 cut(s)	240
MspA1I	CMGCKG	2 cut(s)	187, 772
MspI	CCGG	3 cut(s)	12, 67, 489
MspR9I	CCNGG	2 cut(s)	13, 666
MvaI	CCWGG	1 cut(s)	666
MwoI	GCNNNNNNNGC	7 cut(s)	67, 86, 268, 356, 365, 775, 817
NciI	CCSGG	1 cut(s)	13
NdeII	GATC	3 cut(s)	157, 481, 548
NlaIII	CATG	7 cut(s)	56, 239, 338, 350, 367, 463, 506
NlaIV	GGNNCC	1 cut(s)	523
NmuCI	GTSAC	1 cut(s)	838
NspI	RCATGY	2 cut(s)	338, 463
PagI	TCATGA	1 cut(s)	52
PciI	ACATGT	1 cut(s)	334
PdmI	GAANNNNTTC	2 cut(s)	324, 564
PfeI	GAWTC	2 cut(s)	8, 539
PkrI	GCNGC	9 cut(s)	38, 41, 72, 111, 231, 234, 494, 702, 771
Ple19I	CGATCG	1 cut(s)	551
PleI	GAGTC	2 cut(s)	350, 420
PmaCI	CACGTG	1 cut(s)	127
PmlI	CACGTG	1 cut(s)	127
PpsI	GAGTC	2 cut(s)	350, 420
Ppu21I	YACGTR	1 cut(s)	127
PscI	ACATGT	1 cut(s)	334
Psp6I	CCWGG	1 cut(s)	664
PspCI	CACGTG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	664
PspN4I	GGNNCC	1 cut(s)	523
PspPI	GGNCC	2 cut(s)	521, 717
PstNI	CAGNNNCTG	1 cut(s)	115
PvuI	CGATCG	1 cut(s)	551
PvuII	CAGCTG	2 cut(s)	187, 772
RseI	CAYNNNNRTG	1 cut(s)	464
SaqAI	TTAA	4 cut(s)	554, 603, 798, 848
SatI	GCNGC	9 cut(s)	37, 40, 71, 110, 230, 233, 493, 701, 770
Sau3AI	GATC	3 cut(s)	157, 481, 548
Sau96I	GGNCC	2 cut(s)	521, 717
SchI	GAGTC	2 cut(s)	351, 421
ScrFI	CCNGG	2 cut(s)	13, 666
SduI	GDGCHC	2 cut(s)	174, 311
SmiMI	CAYNNNNRTG	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	5 cut(s)	575, 612, 633, 659, 691
SsiI	CCGC	5 cut(s)	36, 39, 350, 492, 811
StyD4I	CCNGG	2 cut(s)	11, 664
TaaI	ACNGT	2 cut(s)	47, 682
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	3 cut(s)	156, 381, 568
TasI	AATT	5 cut(s)	575, 612, 633, 659, 691
TauI	GCSGC	3 cut(s)	39, 42, 495
TfiI	GAWTC	2 cut(s)	8, 539
Tru1I	TTAA	4 cut(s)	554, 603, 798, 848
Tru9I	TTAA	4 cut(s)	554, 603, 798, 848
TscAI	CASTG	1 cut(s)	174
TseFI	GTSAC	1 cut(s)	838
TseI	GCWGC	6 cut(s)	70, 109, 229, 232, 700, 769
Tsp45I	GTSAC	1 cut(s)	838
TspDTI	ATGAA	1 cut(s)	784
TspRI	CASTG	1 cut(s)	174
XagI	CCTNNNNNAGG	1 cut(s)	136
XapI	RAATTY	1 cut(s)	633
XceI	RCATGY	2 cut(s)	338, 463
XmnI	GAANNNNTTC	2 cut(s)	324, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.