Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0015425

Physical Location & Seq

Genomic Coordinates Forward (+)

757360 .. 760921

Gene Structure 3562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g01260.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGCAAGACAGTGGCTTGGGAATGATGGGTTCCGGCGGAGGTCTGAGTGGCGGTGGTGGTGATGACCATGCTCACCAACTCAAGTCGGAGATTGCCACACACCCTCTCTACGAACAACTCCTGTCGGCACACGTGTCTTGTCTTCGTGTCGCCACGCCTATCGATCAGTTGCCGCTGATTGACGCTCAGCTCTCTCAGTCACACCATCTCCTCCGCTCCTACGCCTCGCACCACCAACAACACGGCCATTCTCTCTCGCCTCATGAGCGCCAAGAGCTCGATAACTTCTTGGCGCAGTATTTGATAGTGTTGTGCTCGTTCAAGGAACAGCTTCAGCAACATGTGAGAGTCCACGCCGTCGAGGCGGTCATGGCCTGCCGTGAAATTGAAAGCACCTTGCAGGCTCTTACCGGAGTTACCCTGGGTGAAGGAACAGGTGCAACAATGTCAGATGATGAAGATGACATGCCAACGGATTTCTCTATGGATCAAGCTGGCTCTGATGCCCATGACATGATGGGATTTGGACTCCCTACTGAATCTGAAAGATCTCTCATGGAAAGAGTTCGTCAAGAATTGAAGATTGAGCTCAAGCAGGGTTTCAAGTCGAGAATTGAGGATGTGAGGGAGGAAATCTTAAGAAAAAGAAGGGCAGGAAAATTACCTGGGGACACAACTACAGTGCTGAAGAATTGGTGGCAGCAACACTCGAAGTGGCCATATCCAACCGAGGACGACAAGGCAAAACTTGTGGAAGAGACAGGGTTGCAGCTTAAGCAAATAAACAATTGGTTTATCAATCAAAGGAAGCGCAACTGGCACAGCAACTCTCAATCAGTGACTTCTTTGAAGTCGAAGCGCAAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0008152 GO:0009058 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010087 GO:0010089 GO:0010191 GO:0010192 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902679 GO:1903338 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

290

Amino Acids

32.62

Weight (kDa)

6.24

Isoelectric Point (pI)

57.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	27 - 68	6.5e-19	KNOX1 domain
KNOX2	PF03791	87 - 137	5.4e-17	KNOX2 domain
Homeobox_KN	PF05920	232 - 271	3.7e-19	Homeobox KN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62990
fragaria_vesca	FvH4_5g01260
malus_domestica	MD04G1069700.v1.1 MD06G1071100.v1.1
prunus_persica	Prupe.5G088100_v2.0.a1 Prupe.5G088100_v2.0.a1
pyrus_communis	pycom04g06340
rosa_chinensis	RchiOBHm_Chr7g0199751
rosa_laevigata	RLG00000003773
rosa_multiflora	Rmu_sc0002748.1_g000022
rosa_roxburghii	Rroxscaffold_3G00256460
rosa_rugosa	Rorug07G0056000 Rorug07G0056100
rosa_samantha	Rh7AG181500 Rh7BG184300
rosa_wichuraiana	Rw7G015910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	216
AciI	CCGC	5 cut(s)	36, 51, 173, 214, 365
AclWI	GGATC	1 cut(s)	495
AcoI	YGGCCR	2 cut(s)	244, 716
AcuI	CTGAAG	2 cut(s)	317, 707
AcvI	CACGTG	1 cut(s)	133
AflII	CTTAAG	2 cut(s)	637, 773
AflIII	ACRYGT	3 cut(s)	130, 132, 340
AgsI	TTSAA	5 cut(s)	322, 389, 580, 604, 850
AjnI	CCWGG	2 cut(s)	420, 664
AluBI	AGCT	6 cut(s)	190, 277, 331, 494, 589, 772
AluI	AGCT	6 cut(s)	190, 277, 331, 494, 589, 772
Alw21I	GWGCWC	3 cut(s)	279, 317, 591
Alw26I	GTCTC	1 cut(s)	752
AlwI	GGATC	1 cut(s)	495
AoxI	GGCC	3 cut(s)	244, 372, 716
ApeKI	GCWGC	2 cut(s)	700, 769
Asp700I	GAANNNNTTC	2 cut(s)	330, 564
AspLEI	GCGC	4 cut(s)	270, 295, 813, 861
AsuHPI	GGTGA	3 cut(s)	65, 71, 437
BalI	TGGCCA	1 cut(s)	718
BanII	GRGCYC	2 cut(s)	279, 591
BbrPI	CACGTG	1 cut(s)	133
BbsI	GAAGAC	1 cut(s)	134
Bbv12I	GWGCWC	3 cut(s)	279, 317, 591
BbvI	GCAGC	2 cut(s)	712, 781
BccI	CCATC	3 cut(s)	19, 213, 511
BceAI	ACGGC	3 cut(s)	259, 341, 363
BciT130I	CCWGG	2 cut(s)	422, 666
BcoDI	GTCTC	1 cut(s)	752
BfmI	CTRYAG	1 cut(s)	678
BfoI	RGCGCY	1 cut(s)	271
BfrI	CTTAAG	2 cut(s)	637, 773
BglI	GCCNNNNNGGC	1 cut(s)	362
BglII	AGATCT	1 cut(s)	548
BisI	GCNGC	3 cut(s)	173, 701, 770
BlpI	GCTNAGC	1 cut(s)	186
BlsI	GCNGC	3 cut(s)	174, 702, 771
Bme1390I	CCNGG	2 cut(s)	422, 666
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	2 cut(s)	422, 666
BmsI	GCATC	1 cut(s)	493
BpiI	GAAGAC	1 cut(s)	134
Bpu1102I	GCTNAGC	1 cut(s)	186
BpuEI	CTTGAG	2 cut(s)	65, 575
Bsa29I	ATCGAT	1 cut(s)	162
BsaAI	YACGTR	1 cut(s)	133
BsaJI	CCNNGG	4 cut(s)	420, 421, 665, 729
BsaWI	WCCGGW	1 cut(s)	410
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bse1I	ACTGG	1 cut(s)	821
BseBI	CCWGG	2 cut(s)	422, 666
BseCI	ATCGAT	1 cut(s)	162
BseDI	CCNNGG	4 cut(s)	420, 421, 665, 729
BseGI	GGATG	1 cut(s)	625
BseMII	CTCAG	3 cut(s)	35, 200, 209
BseNI	ACTGG	1 cut(s)	821
BseRI	GAGGAG	1 cut(s)	200
BseXI	GCAGC	2 cut(s)	712, 781
BshFI	GGCC	3 cut(s)	246, 374, 718
BshVI	ATCGAT	1 cut(s)	162
BsiHKAI	GWGCWC	3 cut(s)	279, 317, 591
BsiSI	CCGG	2 cut(s)	33, 411
BslFI	GGGAC	1 cut(s)	683
BsmAI	GTCTC	1 cut(s)	752
BsmFI	GGGAC	1 cut(s)	683
BsnI	GGCC	3 cut(s)	246, 374, 718
Bsp1286I	GDGCHC	3 cut(s)	279, 317, 591
Bsp143I	GATC	3 cut(s)	163, 487, 548
Bsp1720I	GCTNAGC	1 cut(s)	186
BspACI	CCGC	5 cut(s)	36, 51, 173, 214, 365
BspANI	GGCC	3 cut(s)	246, 374, 718
BspCNI	CTCAG	3 cut(s)	36, 199, 208
BspDI	ATCGAT	1 cut(s)	162
BspHI	TCATGA	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	31
BspPI	GGATC	1 cut(s)	495
BspTI	CTTAAG	2 cut(s)	637, 773
BsrBI	CCGCTC	1 cut(s)	216
BsrI	ACTGG	1 cut(s)	821
BssECI	CCNNGG	4 cut(s)	420, 421, 665, 729
BssMI	GATC	3 cut(s)	163, 487, 548
Bst2UI	CCWGG	2 cut(s)	422, 666
Bst4CI	ACNGT	2 cut(s)	11, 682
Bst6I	CTCTTC	1 cut(s)	750
BstAFI	CTTAAG	2 cut(s)	637, 773
BstBAI	YACGTR	1 cut(s)	133
BstC8I	GCNNGC	3 cut(s)	376, 402, 496
BstDEI	CTNAG	3 cut(s)	44, 186, 195
BstF5I	GGATG	1 cut(s)	625
BstH2I	RGCGCY	1 cut(s)	271
BstHHI	GCGC	4 cut(s)	270, 295, 813, 861
BstKTI	GATC	3 cut(s)	166, 490, 551
BstMAI	GTCTC	1 cut(s)	752
BstMBI	GATC	3 cut(s)	163, 487, 548
BstMWI	GCNNNNNNNGC	6 cut(s)	265, 274, 362, 371, 775, 817
BstNI	CCWGG	2 cut(s)	422, 666
BstNSI	RCATGY	2 cut(s)	344, 469
BstSCI	CCNGG	2 cut(s)	420, 664
BstSFI	CTRYAG	1 cut(s)	678
BstV1I	GCAGC	2 cut(s)	712, 781
BstV2I	GAAGAC	1 cut(s)	134
BstX2I	RGATCY	1 cut(s)	548
BstYI	RGATCY	1 cut(s)	548
Bsu15I	ATCGAT	1 cut(s)	162
BsuRI	GGCC	3 cut(s)	246, 374, 718
BsuTUI	ATCGAT	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	625
BtsIMutI	CAGTG	3 cut(s)	16, 687, 843
Cac8I	GCNNGC	3 cut(s)	376, 402, 496
CciI	TCATGA	1 cut(s)	262
CfoI	GCGC	4 cut(s)	270, 295, 813, 861
ClaI	ATCGAT	1 cut(s)	162
CseI	GACGC	1 cut(s)	191
CspCI	CAANNNNNGTGG	2 cut(s)	732, 767
CviAII	CATG	8 cut(s)	68, 263, 341, 370, 466, 509, 514, 556
DdeI	CTNAG	3 cut(s)	44, 186, 195
DpnI	GATC	3 cut(s)	165, 489, 550
DpnII	GATC	3 cut(s)	163, 487, 548
EaeI	YGGCCR	2 cut(s)	244, 716
Eam1104I	CTCTTC	1 cut(s)	750
EarI	CTCTTC	1 cut(s)	750
EciI	GGCGGA	1 cut(s)	51
Ecl136II	GAGCTC	2 cut(s)	277, 589
Eco24I	GRGCYC	2 cut(s)	279, 591
Eco53kI	GAGCTC	2 cut(s)	277, 589
Eco57I	CTGAAG	2 cut(s)	317, 707
Eco72I	CACGTG	1 cut(s)	133
EcoICRI	GAGCTC	2 cut(s)	277, 589
EcoRII	CCWGG	2 cut(s)	420, 664
EcoT38I	GRGCYC	2 cut(s)	279, 591
FaeI	CATG	8 cut(s)	71, 266, 344, 373, 469, 512, 517, 559
FaqI	GGGAC	1 cut(s)	683
FatI	CATG	8 cut(s)	67, 262, 340, 369, 465, 508, 513, 555
Fnu4HI	GCNGC	3 cut(s)	173, 701, 770
FokI	GGATG	1 cut(s)	632
FriOI	GRGCYC	2 cut(s)	279, 591
Fsp4HI	GCNGC	3 cut(s)	173, 701, 770
GlaI	GCGC	4 cut(s)	269, 294, 812, 860
GluI	GCNGC	3 cut(s)	173, 701, 770
HaeII	RGCGCY	1 cut(s)	271
HaeIII	GGCC	3 cut(s)	246, 374, 718
HapII	CCGG	2 cut(s)	33, 411
HgaI	GACGC	1 cut(s)	191
HhaI	GCGC	4 cut(s)	270, 295, 813, 861
Hin1II	CATG	8 cut(s)	71, 266, 344, 373, 469, 512, 517, 559
Hin6I	GCGC	4 cut(s)	268, 293, 811, 859
HinP1I	GCGC	4 cut(s)	268, 293, 811, 859
HinfI	GANTC	3 cut(s)	348, 528, 539
HpaII	CCGG	2 cut(s)	33, 411
HphI	GGTGA	3 cut(s)	65, 71, 437
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	5 cut(s)	45, 88, 451, 502, 544
Hpy188III	TCNNGA	3 cut(s)	263, 572, 609
Hpy8I	GTNNAC	1 cut(s)	352
Hpy99I	CGWCG	1 cut(s)	362
HpyAV	CCTTC	2 cut(s)	422, 642
HpyCH4III	ACNGT	2 cut(s)	11, 682
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	4 cut(s)	4, 400, 440, 769
HpyF10VI	GCNNNNNNNGC	6 cut(s)	265, 274, 362, 371, 775, 817
HpyF3I	CTNAG	3 cut(s)	44, 186, 195
HpySE526I	ACGT	1 cut(s)	132
Hsp92II	CATG	8 cut(s)	71, 266, 344, 373, 469, 512, 517, 559
HspAI	GCGC	4 cut(s)	268, 293, 811, 859
Kzo9I	GATC	3 cut(s)	163, 487, 548
LmnI	GCTCC	1 cut(s)	221
Lsp1109I	GCAGC	2 cut(s)	712, 781
LweI	GCATC	1 cut(s)	493
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	3 cut(s)	198, 415, 838
MalI	GATC	3 cut(s)	165, 489, 550
MbiI	CCGCTC	1 cut(s)	216
MboI	GATC	3 cut(s)	163, 487, 548
MboII	GAAGA	5 cut(s)	134, 470, 592, 700, 767
MfeI	CAATTG	1 cut(s)	787
MflI	RGATCY	1 cut(s)	548
MhlI	GDGCHC	3 cut(s)	279, 317, 591
MlsI	TGGCCA	1 cut(s)	718
MluCI	AATT	6 cut(s)	384, 575, 612, 659, 691, 787
MluNI	TGGCCA	1 cut(s)	718
MlyI	GAGTC	2 cut(s)	357, 522
MmeI	TCCRAC	2 cut(s)	66, 749
Mox20I	TGGCCA	1 cut(s)	718
MroXI	GAANNNNTTC	2 cut(s)	330, 564
MscI	TGGCCA	1 cut(s)	718
MseI	TTAA	2 cut(s)	638, 774
Msp20I	TGGCCA	1 cut(s)	718
MspA1I	CMGCKG	1 cut(s)	175
MspCI	CTTAAG	2 cut(s)	637, 773
MspI	CCGG	2 cut(s)	33, 411
MspR9I	CCNGG	2 cut(s)	422, 666
MunI	CAATTG	1 cut(s)	787
MvaI	CCWGG	2 cut(s)	422, 666
MwoI	GCNNNNNNNGC	6 cut(s)	265, 274, 362, 371, 775, 817
NdeII	GATC	3 cut(s)	163, 487, 548
NlaIII	CATG	8 cut(s)	71, 266, 344, 373, 469, 512, 517, 559
NlaIV	GGNNCC	1 cut(s)	31
NmuCI	GTSAC	2 cut(s)	198, 838
NspI	RCATGY	2 cut(s)	344, 469
PagI	TCATGA	1 cut(s)	262
PasI	CCCWGGG	1 cut(s)	421
PciI	ACATGT	1 cut(s)	340
PdmI	GAANNNNTTC	2 cut(s)	330, 564
PfeI	GAWTC	1 cut(s)	539
PkrI	GCNGC	3 cut(s)	174, 702, 771
PleI	GAGTC	2 cut(s)	356, 522
PmaCI	CACGTG	1 cut(s)	133
PmlI	CACGTG	1 cut(s)	133
PpsI	GAGTC	2 cut(s)	356, 522
Ppu21I	YACGTR	1 cut(s)	133
PscI	ACATGT	1 cut(s)	340
Psp124BI	GAGCTC	2 cut(s)	279, 591
Psp6I	CCWGG	2 cut(s)	420, 664
PspCI	CACGTG	1 cut(s)	133
PspGI	CCWGG	2 cut(s)	420, 664
PspN4I	GGNNCC	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	548
SacI	GAGCTC	2 cut(s)	279, 591
SaqAI	TTAA	2 cut(s)	638, 774
SatI	GCNGC	3 cut(s)	173, 701, 770
Sau3AI	GATC	3 cut(s)	163, 487, 548
SchI	GAGTC	2 cut(s)	357, 522
ScrFI	CCNGG	2 cut(s)	422, 666
SduI	GDGCHC	3 cut(s)	279, 317, 591
SfaNI	GCATC	1 cut(s)	493
SfcI	CTRYAG	1 cut(s)	678
SmlI	CTYRAG	4 cut(s)	80, 590, 637, 773
SmoI	CTYRAG	4 cut(s)	80, 590, 637, 773
Sse9I	AATT	6 cut(s)	384, 575, 612, 659, 691, 787
SsiI	CCGC	5 cut(s)	36, 51, 173, 214, 365
SstI	GAGCTC	2 cut(s)	279, 591
StyD4I	CCNGG	2 cut(s)	420, 664
TaaI	ACNGT	2 cut(s)	11, 682
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	6 cut(s)	162, 279, 360, 608, 710, 854
TasI	AATT	6 cut(s)	384, 575, 612, 659, 691, 787
TauI	GCSGC	1 cut(s)	175
TfiI	GAWTC	1 cut(s)	539
Tru1I	TTAA	2 cut(s)	638, 774
Tru9I	TTAA	2 cut(s)	638, 774
TscAI	CASTG	3 cut(s)	16, 687, 843
TseFI	GTSAC	2 cut(s)	198, 838
TseI	GCWGC	2 cut(s)	700, 769
Tsp45I	GTSAC	2 cut(s)	198, 838
TspDTI	ATGAA	1 cut(s)	471
TspGWI	ACGGA	1 cut(s)	488
TspRI	CASTG	3 cut(s)	16, 687, 843
Vha464I	CTTAAG	2 cut(s)	637, 773
XceI	RCATGY	2 cut(s)	344, 469
XmnI	GAANNNNTTC	2 cut(s)	330, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.