AT1G63270

ABC transporter I family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012194
Physical Location & Seq
Reverse (-)
23469554 .. 23471510
1957 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G63270.1

Sequence Viewer

Length: 690 bp
ATGTCTATCAGGAGGCCTCAAATCCCTCGGCTTCTTCTTCAAAACGTCTCTTGCATGAGAAACGCGCAGCAGATTCTAAGACACGTGAATGTATCTCTTCATGACGGTGGTGCACTTGTCTTAACTGGAACAAACGGATCCGGTAAATCAACTTTCTTGAGAATGTTAGCTGGATTCTCAAAACCCTCTGCAGGAGAAATCCTTTGGAATGGTCACGACATCACACAGTCAGGAATCTTTCAACAATACAAACTCCAACTCAACTGGATCTCTTTAAAAGACGCCATCAAAGAGAGATTCACAGTACTCGATAATGTCCAATGGTTTGAGCTTCTCGAGAATAAAATCGGCAAAGCTCAACCCGCGTTGGAGCTAATGGGGTTAGGGAGACTGGTGAAAGAGAAATCGAGAATGTTATCGATGGGTCAGAGGAAAAGATTGCAACTTGCGAGGCTCCTCGCTATCGATAGACCGATATGGCTTTTGGATGAACCATCCGTTGCTTTGGATGATGAAGGTGTTAGATTGCTCGAGTATATTATCGCAGAGCATAGGAAAAAAGGAGGGATTGTGATTGTCGCGACTCATCTTCCGATAGACATTGAAGATGCTATGATCTTGAGGCTTCCTCCTAGGTTTCCAAGGAAAATGACTTTGATTGATATGCTTGATCGTGCAGACATTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran

Protein Analysis

229

Amino Acids

25.98

Weight (kDa)

9.82

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 26 - 166 4.7e-29 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63270
fragaria_vesca FvH4_1g01200 FvH4_1g01200 FvH4_1g01210
malus_domestica MD02G1010200.v1.1
prunus_persica Prupe.7G259900_v2.0.a1
pyrus_communis pycom02g00890 pycom15g13920
rosa_chinensis RchiOBHm_Chr2g0086001
rosa_laevigata RLG00000015733
rosa_multiflora Rmu_sc0023469.1_g000002
rosa_roxburghii Rroxscaffold_2G00154860
rosa_rugosa Rorug01G0464900 Rorug05G0522600
rosa_samantha Rh2AG014200 Rh2BG014700 Rh2CG015300 Rh2DG016600
rosa_wichuraiana Rw2G001260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 65, 365, 581
AciI CCGC 1 cut(s) 363
AclWI GGATC 3 cut(s) 132, 145, 275
AcvI CACGTG 1 cut(s) 85
AcyI GRCGYC 1 cut(s) 282
AfaI GTAC 1 cut(s) 306
AfiI CCNNNNNNNGG 1 cut(s) 191
AflIII ACRYGT 1 cut(s) 82
AgsI TTSAA 3 cut(s) 41, 242, 605
AluBI AGCT 4 cut(s) 170, 331, 356, 373
AluI AGCT 4 cut(s) 170, 331, 356, 373
Alw21I GWGCWC 1 cut(s) 115
Alw26I GTCTC 2 cut(s) 52, 382
Alw44I GTGCAC 1 cut(s) 111
AlwI GGATC 3 cut(s) 132, 145, 275
Ama87I CYCGRG 2 cut(s) 335, 530
AoxI GGCC 1 cut(s) 14
ApaLI GTGCAC 1 cut(s) 111
ApeKI GCWGC 1 cut(s) 67
AspA2I CCTAGG 1 cut(s) 632
AspLEI GCGC 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 406
AvaI CYCGRG 2 cut(s) 335, 530
AvrII CCTAGG 1 cut(s) 632
BaeGI GKGCMC 1 cut(s) 115
BamHI GGATCC 1 cut(s) 137
BbrPI CACGTG 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 1 cut(s) 79
BccI CCATC 3 cut(s) 293, 415, 502
BcoDI GTCTC 2 cut(s) 52, 382
BfaI CTAG 1 cut(s) 633
BfmI CTRYAG 1 cut(s) 189
BisI GCNGC 1 cut(s) 68
BlnI CCTAGG 1 cut(s) 632
BlsI GCNGC 1 cut(s) 69
BmcAI AGTACT 1 cut(s) 306
BmeT110I CYCGRG 2 cut(s) 335, 530
BmiI GGNNCC 2 cut(s) 139, 455
BmsI GCATC 1 cut(s) 598
BplI GAGNNNNNCTC 2 cut(s) 613, 645
BpuEI CTTGAG 2 cut(s) 178, 640
Bsa29I ATCGAT 2 cut(s) 419, 465
BsaAI YACGTR 1 cut(s) 85
BsaHI GRCGYC 1 cut(s) 282
BsaJI CCNNGG 3 cut(s) 26, 632, 641
BsaWI WCCGGW 1 cut(s) 140
BsaXI ACNNNNNCTCC 2 cut(s) 555, 585
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse1I ACTGG 3 cut(s) 130, 269, 396
BseCI ATCGAT 2 cut(s) 419, 465
BseDI CCNNGG 3 cut(s) 26, 632, 641
BseGI GGATG 3 cut(s) 493, 494, 514
BseLI CCNNNNNNNGG 1 cut(s) 191
BseNI ACTGG 3 cut(s) 130, 269, 396
BseRI GAGGAG 1 cut(s) 446
BseSI GKGCMC 1 cut(s) 115
BseXI GCAGC 1 cut(s) 79
Bsh1236I CGCG 3 cut(s) 65, 365, 581
BshFI GGCC 1 cut(s) 16
BshVI ATCGAT 2 cut(s) 419, 465
BsiHKAI GWGCWC 1 cut(s) 115
BsiHKCI CYCGRG 2 cut(s) 335, 530
BsiSI CCGG 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 2 cut(s) 52, 382
BsmBI CGTCTC 1 cut(s) 52
BsnI GGCC 1 cut(s) 16
BsoBI CYCGRG 2 cut(s) 335, 530
Bsp1286I GDGCHC 1 cut(s) 115
Bsp143I GATC 4 cut(s) 137, 267, 615, 670
Bsp68I TCGCGA 1 cut(s) 581
BspACI CCGC 1 cut(s) 363
BspANI GGCC 1 cut(s) 16
BspDI ATCGAT 2 cut(s) 419, 465
BspFNI CGCG 3 cut(s) 65, 365, 581
BspHI TCATGA 1 cut(s) 100
BspLI GGNNCC 2 cut(s) 139, 455
BspMAI CTGCAG 1 cut(s) 193
BspPI GGATC 3 cut(s) 132, 145, 275
BsrI ACTGG 3 cut(s) 130, 269, 396
BssECI CCNNGG 3 cut(s) 26, 632, 641
BssMI GATC 4 cut(s) 137, 267, 615, 670
BssNI GRCGYC 1 cut(s) 282
BssT1I CCWWGG 2 cut(s) 632, 641
Bst4CI ACNGT 3 cut(s) 107, 228, 304
Bst6I CTCTTC 1 cut(s) 102
BstACI GRCGYC 1 cut(s) 282
BstBAI YACGTR 1 cut(s) 85
BstDEI CTNAG 2 cut(s) 77, 687
BstF5I GGATG 3 cut(s) 493, 494, 514
BstFNI CGCG 3 cut(s) 65, 365, 581
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 4 cut(s) 140, 270, 618, 673
BstMAI GTCTC 2 cut(s) 52, 382
BstMBI GATC 4 cut(s) 137, 267, 615, 670
BstMWI GCNNNNNNNGC 1 cut(s) 362
BstSFI CTRYAG 1 cut(s) 189
BstSLI GKGCMC 1 cut(s) 115
BstUI CGCG 3 cut(s) 65, 365, 581
BstV1I GCAGC 1 cut(s) 79
BstX2I RGATCY 2 cut(s) 137, 267
BstYI RGATCY 2 cut(s) 137, 267
Bsu15I ATCGAT 2 cut(s) 419, 465
BsuRI GGCC 1 cut(s) 16
BsuTUI ATCGAT 2 cut(s) 419, 465
BtsCI GGATG 3 cut(s) 493, 494, 514
BtuMI TCGCGA 1 cut(s) 581
CciI TCATGA 1 cut(s) 100
CfoI GCGC 1 cut(s) 67
ClaI ATCGAT 2 cut(s) 419, 465
CseI GACGC 1 cut(s) 290
Csp6I GTAC 1 cut(s) 305
CviAII CATG 2 cut(s) 55, 101
CviJI RGCY 9 cut(s) 16, 31, 170, 331, 356, 373, 454, 481, 625
CviKI_1 RGCY 9 cut(s) 16, 31, 170, 331, 356, 373, 454, 481, 625
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 2 cut(s) 77, 687
DpnI GATC 4 cut(s) 139, 269, 617, 672
DpnII GATC 4 cut(s) 137, 267, 615, 670
DraI TTTAAA 1 cut(s) 276
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Eco130I CCWWGG 2 cut(s) 632, 641
Eco147I AGGCCT 1 cut(s) 16
Eco72I CACGTG 1 cut(s) 85
Eco88I CYCGRG 2 cut(s) 335, 530
EcoT14I CCWWGG 2 cut(s) 632, 641
ErhI CCWWGG 2 cut(s) 632, 641
Esp3I CGTCTC 1 cut(s) 52
FaeI CATG 2 cut(s) 58, 104
FaiI YATR 7 cut(s) 56, 102, 478, 537, 552, 614, 665
FatI CATG 2 cut(s) 54, 100
FauI CCCGC 1 cut(s) 370
Fnu4HI GCNGC 1 cut(s) 68
FokI GGATG 3 cut(s) 481, 500, 521
Fsp4HI GCNGC 1 cut(s) 68
FspBI CTAG 1 cut(s) 633
GlaI GCGC 1 cut(s) 66
GluI GCNGC 1 cut(s) 68
HaeIII GGCC 1 cut(s) 16
HapII CCGG 1 cut(s) 141
HgaI GACGC 1 cut(s) 290
HhaI GCGC 1 cut(s) 67
Hin1I GRCGYC 1 cut(s) 282
Hin1II CATG 2 cut(s) 58, 104
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HinfI GANTC 5 cut(s) 73, 174, 234, 297, 583
HpaII CCGG 1 cut(s) 141
HphI GGTGA 1 cut(s) 406
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 2 cut(s) 429, 594
Hpy8I GTNNAC 1 cut(s) 113
HpyAV CCTTC 1 cut(s) 509
HpyCH4III ACNGT 3 cut(s) 107, 228, 304
HpyCH4IV ACGT 2 cut(s) 45, 84
HpyCH4V TGCA 5 cut(s) 54, 113, 191, 442, 677
HpyF10VI GCNNNNNNNGC 1 cut(s) 362
HpyF3I CTNAG 2 cut(s) 77, 687
HpySE526I ACGT 2 cut(s) 45, 84
Hsp92I GRCGYC 1 cut(s) 282
Hsp92II CATG 2 cut(s) 58, 104
HspAI GCGC 1 cut(s) 65
Kzo9I GATC 4 cut(s) 137, 267, 615, 670
LmnI GCTCC 2 cut(s) 370, 459
LpnPI CCDG 7 cut(s) 111, 154, 156, 177, 216, 250, 377
Lsp1109I GCAGC 1 cut(s) 79
LweI GCATC 1 cut(s) 598
MaeI CTAG 1 cut(s) 633
MaeII ACGT 2 cut(s) 45, 84
MaeIII GTNAC 1 cut(s) 212
MalI GATC 4 cut(s) 139, 269, 617, 672
MboI GATC 4 cut(s) 137, 267, 615, 670
MboII GAAGA 5 cut(s) 26, 29, 89, 581, 617
MflI RGATCY 2 cut(s) 137, 267
MhlI GDGCHC 1 cut(s) 115
MlyI GAGTC 1 cut(s) 577
MmeI TCCRAC 2 cut(s) 280, 348
MseI TTAA 2 cut(s) 122, 275
MslI CAYNNNNRTG 2 cut(s) 87, 105
MspI CCGG 1 cut(s) 141
MvnI CGCG 3 cut(s) 65, 365, 581
MwoI GCNNNNNNNGC 1 cut(s) 362
NdeII GATC 4 cut(s) 137, 267, 615, 670
NlaIII CATG 2 cut(s) 58, 104
NlaIV GGNNCC 2 cut(s) 139, 455
NmeAIII GCCGAG 1 cut(s) 7
NmuCI GTSAC 1 cut(s) 212
NruI TCGCGA 1 cut(s) 581
PaeR7I CTCGAG 2 cut(s) 335, 530
PagI TCATGA 1 cut(s) 100
PceI AGGCCT 1 cut(s) 16
PfeI GAWTC 4 cut(s) 73, 174, 234, 297
PkrI GCNGC 1 cut(s) 69
PleI GAGTC 1 cut(s) 577
PmaCI CACGTG 1 cut(s) 85
PmlI CACGTG 1 cut(s) 85
PpsI GAGTC 1 cut(s) 577
Ppu21I YACGTR 1 cut(s) 85
PspCI CACGTG 1 cut(s) 85
PspN4I GGNNCC 2 cut(s) 139, 455
PspXI VCTCGAGB 1 cut(s) 530
PstI CTGCAG 1 cut(s) 193
PsuI RGATCY 2 cut(s) 137, 267
RruI TCGCGA 1 cut(s) 581
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
RseI CAYNNNNRTG 2 cut(s) 87, 105
SaqAI TTAA 2 cut(s) 122, 275
SatI GCNGC 1 cut(s) 68
Sau3AI GATC 4 cut(s) 137, 267, 615, 670
ScaI AGTACT 1 cut(s) 306
SchI GAGTC 1 cut(s) 577
SduI GDGCHC 1 cut(s) 115
SetI ASST 8 cut(s) 48, 87, 172, 333, 358, 375, 520, 638
SfaNI GCATC 1 cut(s) 598
SfcI CTRYAG 1 cut(s) 189
Sfr274I CTCGAG 2 cut(s) 335, 530
SlaI CTCGAG 2 cut(s) 335, 530
SmiMI CAYNNNNRTG 2 cut(s) 87, 105
SmlI CTYRAG 4 cut(s) 157, 335, 530, 619
SmoI CTYRAG 4 cut(s) 157, 335, 530, 619
SseBI AGGCCT 1 cut(s) 16
SsiI CCGC 1 cut(s) 363
SspMI CTAG 1 cut(s) 633
StuI AGGCCT 1 cut(s) 16
StyI CCWWGG 2 cut(s) 632, 641
TaaI ACNGT 3 cut(s) 107, 228, 304
TaiI ACGT 2 cut(s) 48, 87
TaqI TCGA 6 cut(s) 309, 336, 407, 419, 465, 531
TaqII GACCGA 1 cut(s) 487
TatI WGTACW 1 cut(s) 304
TfiI GAWTC 4 cut(s) 73, 174, 234, 297
Tru1I TTAA 2 cut(s) 122, 275
Tru9I TTAA 2 cut(s) 122, 275
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 1 cut(s) 67
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 3 cut(s) 89, 504, 528
TspGWI ACGGA 2 cut(s) 150, 487
VneI GTGCAC 1 cut(s) 111
XhoI CTCGAG 2 cut(s) 335, 530
XmaJI CCTAGG 1 cut(s) 632
XspI CTAG 1 cut(s) 633
ZrmI AGTACT 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.