pycom02g00890

ABC transporter I family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0012194
Physical Location & Seq
Forward (+)
532814 .. 533500
687 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g00890.1

Sequence Viewer

Length: 687 bp
ATGTCTCTCAGAAAGCCTCCGCTTCCCCGTCTCCTTCTCAACAATGTCTCTTGCATGAGGAATGCACAACAAATCTTGAGACACGTAAATGCCTCAGTTCACGATGGTGGAGCACTTGTGCTGATGGGCACTAATGGCTCGGGCAAGTCTACCTTCCTACGCATGTTAGCAGGATTTTCTCGTCCTTCTGCTGGTCAGGTCCTGTGGAATGGACACGACATCACAGATTCGGGAGTTTTCCACCAGTACAAGCTTCAACTTAACTGGCTCTCCCTTAAAGATGCGGTGAAAGAGAAGTTCACAGTTCTCGACAACGTTCAGTGGTTTGAAGTTCTCGAAGGCAAGGAAGGGAATTCACTGCCGGCTTTGGAGCTGATGGGGCTCGGGAGACTGGCAAAGGACAAAGCGAGAATGCTGTCAATGGGGCAGCGGAAAAGGCTGCAGCTCGCAAGGCTTCTGGCAATCGATAGGCCAATTTGGTTGCTTGATGAGCCTTCGGTTGCGTTGGACACTGAAGGGACAAAGCTGCTCGAGTATATCATCGCAGAGCATAGGAAGAAAGGTGGCATTGTGATTGTGGCAACACATCTGCCTATTGACATTGAAGATGCAACGTATTTGAGGCTGCCTCCGAGGTTCCCGAGGAGGATGACTCTCGTAGATATGCTCGATCGTTCGGATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran

Protein Analysis

229

Amino Acids

25.67

Weight (kDa)

9.67

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 26 - 166 5.7e-28 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63270
fragaria_vesca FvH4_1g01200 FvH4_1g01200 FvH4_1g01210
malus_domestica MD02G1010200.v1.1
prunus_persica Prupe.7G259900_v2.0.a1
pyrus_communis pycom02g00890 pycom15g13920
rosa_chinensis RchiOBHm_Chr2g0086001
rosa_laevigata RLG00000015733
rosa_multiflora Rmu_sc0023469.1_g000002
rosa_roxburghii Rroxscaffold_2G00154860
rosa_rugosa Rorug01G0464900 Rorug05G0522600
rosa_samantha Rh2AG014200 Rh2BG014700 Rh2CG015300 Rh2DG016600
rosa_wichuraiana Rw2G001260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 149
AciI CCGC 3 cut(s) 20, 284, 430
AclI AACGTT 1 cut(s) 315
AcsI RAATTY 1 cut(s) 352
AcuI CTGAAG 1 cut(s) 534
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 1 cut(s) 191
AflIII ACRYGT 1 cut(s) 82
AgsI TTSAA 3 cut(s) 257, 329, 605
AleI CACNNNNGTG 1 cut(s) 105
AluBI AGCT 4 cut(s) 253, 373, 445, 526
AluI AGCT 4 cut(s) 253, 373, 445, 526
Alw21I GWGCWC 1 cut(s) 115
Alw26I GTCTC 5 cut(s) 9, 35, 52, 73, 382
AlwNI CAGNNNCTG 1 cut(s) 202
Ama87I CYCGRG 4 cut(s) 139, 383, 530, 640
AoxI GGCC 1 cut(s) 470
ApeKI GCWGC 5 cut(s) 427, 439, 442, 526, 625
ApoI RAATTY 1 cut(s) 352
AspS9I GGNCC 1 cut(s) 199
AsuHPI GGTGA 1 cut(s) 298
AvaI CYCGRG 4 cut(s) 139, 383, 530, 640
AvaII GGWCC 1 cut(s) 199
BaeGI GKGCMC 1 cut(s) 131
BanII GRGCYC 1 cut(s) 384
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 5 cut(s) 426, 439, 454, 513, 612
BccI CCATC 3 cut(s) 98, 118, 370
BcoDI GTCTC 5 cut(s) 9, 35, 52, 73, 382
BfmI CTRYAG 1 cut(s) 440
BisI GCNGC 5 cut(s) 428, 440, 443, 527, 626
BlsI GCNGC 5 cut(s) 429, 441, 444, 528, 627
Bme18I GGWCC 1 cut(s) 199
BmeT110I CYCGRG 4 cut(s) 139, 383, 530, 640
BmgT120I GGNCC 1 cut(s) 199
BmiI GGNNCC 1 cut(s) 638
BmsI GCATC 2 cut(s) 271, 598
BplI GAGNNNNNCTC 4 cut(s) 613, 645, 637, 669
BpuEI CTTGAG 1 cut(s) 97
Bsa29I ATCGAT 1 cut(s) 465
BsaAI YACGTR 1 cut(s) 85
BsaJI CCNNGG 2 cut(s) 632, 641
BsaXI ACNNNNNCTCC 4 cut(s) 102, 132, 254, 284
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse118I RCCGGY 1 cut(s) 361
Bse1I ACTGG 3 cut(s) 244, 269, 396
BseCI ATCGAT 1 cut(s) 465
BseDI CCNNGG 2 cut(s) 632, 641
BseGI GGATG 1 cut(s) 654
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMII CTCAG 2 cut(s) 22, 108
BseNI ACTGG 3 cut(s) 244, 269, 396
BseRI GAGGAG 1 cut(s) 658
BseSI GKGCMC 1 cut(s) 131
BseXI GCAGC 5 cut(s) 426, 439, 454, 513, 612
Bsh1285I CGRYCG 1 cut(s) 673
BshFI GGCC 1 cut(s) 472
BshVI ATCGAT 1 cut(s) 465
BsiEI CGRYCG 1 cut(s) 673
BsiHKAI GWGCWC 1 cut(s) 115
BsiHKCI CYCGRG 4 cut(s) 139, 383, 530, 640
BsiSI CCGG 1 cut(s) 362
BslFI GGGAC 1 cut(s) 532
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 5 cut(s) 9, 35, 52, 73, 382
BsmBI CGTCTC 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 532
BsmI GAATGC 2 cut(s) 67, 417
BsnI GGCC 1 cut(s) 472
BsoBI CYCGRG 4 cut(s) 139, 383, 530, 640
Bsp1286I GDGCHC 3 cut(s) 115, 131, 384
Bsp143I GATC 1 cut(s) 670
BspACI CCGC 3 cut(s) 20, 284, 430
BspANI GGCC 1 cut(s) 472
BspCNI CTCAG 2 cut(s) 21, 107
BspDI ATCGAT 1 cut(s) 465
BspLI GGNNCC 1 cut(s) 638
BspMAI CTGCAG 1 cut(s) 444
BsrFI RCCGGY 1 cut(s) 361
BsrI ACTGG 3 cut(s) 244, 269, 396
BssAI RCCGGY 1 cut(s) 361
BssECI CCNNGG 2 cut(s) 632, 641
BssMI GATC 1 cut(s) 670
Bst4CI ACNGT 1 cut(s) 304
BstBAI YACGTR 1 cut(s) 85
BstC8I GCNNGC 2 cut(s) 363, 447
BstDEI CTNAG 2 cut(s) 8, 94
BstF5I GGATG 1 cut(s) 654
BstKTI GATC 1 cut(s) 673
BstMAI GTCTC 5 cut(s) 9, 35, 52, 73, 382
BstMBI GATC 1 cut(s) 670
BstMCI CGRYCG 1 cut(s) 673
BstMWI GCNNNNNNNGC 5 cut(s) 135, 379, 436, 451, 490
BstNSI RCATGY 1 cut(s) 166
BstSFI CTRYAG 1 cut(s) 440
BstSLI GKGCMC 1 cut(s) 131
BstV1I GCAGC 5 cut(s) 426, 439, 454, 513, 612
Bsu15I ATCGAT 1 cut(s) 465
BsuRI GGCC 1 cut(s) 472
BsuTUI ATCGAT 1 cut(s) 465
BtgZI GCGATG 1 cut(s) 526
BtsCI GGATG 1 cut(s) 654
BtsI GCAGTG 1 cut(s) 356
BtsIMutI CAGTG 3 cut(s) 326, 356, 510
Cac8I GCNNGC 2 cut(s) 363, 447
CaiI CAGNNNCTG 1 cut(s) 202
Cfr10I RCCGGY 1 cut(s) 361
Cfr13I GGNCC 1 cut(s) 199
ClaI ATCGAT 1 cut(s) 465
Csp6I GTAC 1 cut(s) 247
CviAII CATG 2 cut(s) 55, 163
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 2 cut(s) 8, 94
DpnI GATC 1 cut(s) 672
DpnII GATC 1 cut(s) 670
Eco24I GRGCYC 1 cut(s) 384
Eco47I GGWCC 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 534
Eco88I CYCGRG 4 cut(s) 139, 383, 530, 640
EcoO109I RGGNCCY 1 cut(s) 199
EcoRI GAATTC 1 cut(s) 352
EcoT38I GRGCYC 1 cut(s) 384
Esp3I CGTCTC 1 cut(s) 35
FaeI CATG 2 cut(s) 58, 166
FaiI YATR 5 cut(s) 56, 164, 537, 552, 665
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FaqI GGGAC 1 cut(s) 532
FatI CATG 2 cut(s) 54, 162
FblI GTMKAC 1 cut(s) 149
Fnu4HI GCNGC 5 cut(s) 428, 440, 443, 527, 626
FokI GGATG 1 cut(s) 661
FriOI GRGCYC 1 cut(s) 384
Fsp4HI GCNGC 5 cut(s) 428, 440, 443, 527, 626
GluI GCNGC 5 cut(s) 428, 440, 443, 527, 626
HaeIII GGCC 1 cut(s) 472
HapII CCGG 1 cut(s) 362
Hin1II CATG 2 cut(s) 58, 166
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 2 cut(s) 227, 652
HpaII CCGG 1 cut(s) 362
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 3 cut(s) 100, 150, 300
Hpy188I TCNGA 3 cut(s) 11, 633, 679
Hpy188III TCNNGA 7 cut(s) 76, 101, 231, 308, 335, 385, 640
Hpy8I GTNNAC 3 cut(s) 100, 150, 300
HpyAV CCTTC 7 cut(s) 44, 163, 195, 332, 341, 504, 509
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4IV ACGT 3 cut(s) 84, 315, 614
HpyCH4V TGCA 4 cut(s) 54, 65, 442, 611
HpyF10VI GCNNNNNNNGC 5 cut(s) 135, 379, 436, 451, 490
HpyF3I CTNAG 2 cut(s) 8, 94
HpySE526I ACGT 3 cut(s) 84, 315, 614
Hsp92II CATG 2 cut(s) 58, 166
KroI GCCGGC 1 cut(s) 361
KroNI GCCGGC 1 cut(s) 363
Kzo9I GATC 1 cut(s) 670
LmnI GCTCC 2 cut(s) 110, 370
LpnPI CCDG 9 cut(s) 156, 177, 182, 215, 250, 257, 375, 377, 443
Lsp1109I GCAGC 5 cut(s) 426, 439, 454, 513, 612
LweI GCATC 2 cut(s) 271, 598
MaeII ACGT 3 cut(s) 84, 315, 614
MalI GATC 1 cut(s) 672
MboI GATC 1 cut(s) 670
MboII GAAGA 2 cut(s) 568, 617
MhlI GDGCHC 3 cut(s) 115, 131, 384
MluCI AATT 2 cut(s) 352, 474
MlyI GAGTC 1 cut(s) 646
MmeI TCCRAC 1 cut(s) 486
MnlI CCTC 8 cut(s) 27, 51, 103, 615, 627, 636, 639, 639
MroNI GCCGGC 1 cut(s) 361
MseI TTAA 3 cut(s) 261, 276, 685
MslI CAYNNNNRTG 2 cut(s) 87, 105
MspA1I CMGCKG 1 cut(s) 430
MspI CCGG 1 cut(s) 362
Mva1269I GAATGC 2 cut(s) 67, 417
MwoI GCNNNNNNNGC 5 cut(s) 135, 379, 436, 451, 490
NaeI GCCGGC 1 cut(s) 363
NdeII GATC 1 cut(s) 670
NgoMIV GCCGGC 1 cut(s) 361
NlaIII CATG 2 cut(s) 58, 166
NlaIV GGNNCC 1 cut(s) 638
NspI RCATGY 1 cut(s) 166
OliI CACNNNNGTG 1 cut(s) 105
PaeR7I CTCGAG 1 cut(s) 530
PctI GAATGC 2 cut(s) 67, 417
PdiI GCCGGC 1 cut(s) 363
PfeI GAWTC 1 cut(s) 227
PkrI GCNGC 5 cut(s) 429, 441, 444, 528, 627
Ple19I CGATCG 1 cut(s) 673
PleI GAGTC 1 cut(s) 646
PpsI GAGTC 1 cut(s) 646
Ppu21I YACGTR 1 cut(s) 85
PpuMI RGGWCCY 1 cut(s) 199
Psp1406I AACGTT 1 cut(s) 315
Psp5II RGGWCCY 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 638
PspPI GGNCC 1 cut(s) 199
PspPPI RGGWCCY 1 cut(s) 199
PspXI VCTCGAGB 1 cut(s) 530
PstI CTGCAG 1 cut(s) 444
PstNI CAGNNNCTG 1 cut(s) 202
PvuI CGATCG 1 cut(s) 673
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 2 cut(s) 87, 105
SaqAI TTAA 3 cut(s) 261, 276, 685
SatI GCNGC 5 cut(s) 428, 440, 443, 527, 626
Sau3AI GATC 1 cut(s) 670
Sau96I GGNCC 1 cut(s) 199
SchI GAGTC 1 cut(s) 646
SduI GDGCHC 3 cut(s) 115, 131, 384
SfaNI GCATC 2 cut(s) 271, 598
SfcI CTRYAG 1 cut(s) 440
Sfr274I CTCGAG 1 cut(s) 530
SinI GGWCC 1 cut(s) 199
SlaI CTCGAG 1 cut(s) 530
SmiMI CAYNNNNRTG 2 cut(s) 87, 105
SmlI CTYRAG 2 cut(s) 76, 530
SmoI CTYRAG 2 cut(s) 76, 530
Sse9I AATT 2 cut(s) 352, 474
SsiI CCGC 3 cut(s) 20, 284, 430
TaaI ACNGT 1 cut(s) 304
TaiI ACGT 3 cut(s) 87, 318, 617
TaqI TCGA 5 cut(s) 309, 336, 465, 531, 669
TasI AATT 2 cut(s) 352, 474
TatI WGTACW 1 cut(s) 246
TfiI GAWTC 1 cut(s) 227
Tru1I TTAA 3 cut(s) 261, 276, 685
Tru9I TTAA 3 cut(s) 261, 276, 685
TscAI CASTG 3 cut(s) 326, 363, 517
TseI GCWGC 5 cut(s) 427, 439, 442, 526, 625
TspRI CASTG 3 cut(s) 326, 363, 517
VpaK11BI GGWCC 1 cut(s) 199
XapI RAATTY 1 cut(s) 352
XceI RCATGY 1 cut(s) 166
XhoI CTCGAG 1 cut(s) 530
XmiI GTMKAC 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.