Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006887

Physical Location & Seq

Genomic Coordinates Forward (+)

70813188 .. 70815456

Gene Structure 2269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0522600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGAGATAGCAACCATAGAACACTCAAAAGATAAGGACGACAGCTCTGGTGAGATGCCATCGGTACTGGAGATGTTGGGAGTCTTGGTGATGGTGGTACTAACTTTGGTTATCGGCGGAAACTCCATGGATAGAGAAGTGATAAACTTCCTAAGGGACCAAATAGCGAAGTACAGTAAACCGAGAGTCAAAGGGATTATGGTGACGGTGCAGCATCTTATAGTTGTTGCAGTCATGTTAGTTGCAGCCAAACTAATAGCCACAATGGTGATAAATTGGCTAAGGGACCAAATAGCCAAGTATATTAAACCGAGAGTCCAAGGGATTCTGGTGATGGTGCGGCATGTTATAGTTGTTGCAATCATATTAGTCGTGGCCAAACTAATAGCGACAATGCTTATTAATCAGATGAATGTTAAACAACAACAAATATGGTCTGTGACTCACTATTGTACATATCTTGTCCCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008483 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009627 GO:0009719 GO:0009725 GO:0009735 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010285 GO:0014070 GO:0016740 GO:0016769 GO:0023052 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046677 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0098542 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00300 ko01100 ko01110 ko01130 ko01230 map00300 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

157

Amino Acids

17.61

Weight (kDa)

9.48

Isoelectric Point (pI)

25.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33680
fragaria_vesca	FvH4_2g02700 FvH4_2g02700
malus_domestica	MD00G1080600.v1.1 MD05G1111000.v1.1 MD10G1114500.v1.1
prunus_persica	Prupe.8G156000_v2.0.a1
pyrus_communis	pycom05g10690 pycom10g09890 pycom10g09900
rosa_chinensis	RchiOBHm_Chr6g0247121
rosa_laevigata	RLG00000015219 RLG00000030359 RLG00000030363
rosa_multiflora	Rmu_sc0004577.1_g000011 Rmu_sc0030830.1_g000004
rosa_roxburghii	Rroxscaffold_3G00276080 Rroxscaffold_7G00214330
rosa_rugosa	Rorug05G0522500 Rorug05G0522600
rosa_samantha	Rh6AG037800 Rh6BG032400 Rh6BG032700 Rh6CG033500 Rh6DG031200
rosa_wichuraiana	Rw6G003220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	117, 340
AcoI	YGGCCR	1 cut(s)	375
AfaI	GTAC	4 cut(s)	66, 99, 173, 454
AleI	CACNNNNGTG	1 cut(s)	266
AluBI	AGCT	1 cut(s)	45
AluI	AGCT	1 cut(s)	45
AoxI	GGCC	1 cut(s)	375
ApeKI	GCWGC	2 cut(s)	211, 245
AseI	ATTAAT	1 cut(s)	402
AspS9I	GGNCC	2 cut(s)	157, 286
AsuHPI	GGTGA	5 cut(s)	62, 100, 214, 280, 343
AvaII	GGWCC	2 cut(s)	157, 286
AxyI	CCTNAGG	1 cut(s)	152
BalI	TGGCCA	1 cut(s)	377
BbvI	GCAGC	2 cut(s)	223, 257
BccI	CCATC	3 cut(s)	67, 85, 328
BisI	GCNGC	3 cut(s)	212, 246, 341
BlsI	GCNGC	3 cut(s)	213, 247, 342
Bme18I	GGWCC	2 cut(s)	157, 286
BmgT120I	GGNCC	2 cut(s)	157, 286
BmiI	GGNNCC	2 cut(s)	158, 287
BmsI	GCATC	2 cut(s)	45, 223
BpmI	CTGGAG	1 cut(s)	89
Bpu10I	CCTNAGC	1 cut(s)	281
BsaJI	CCNNGG	2 cut(s)	126, 319
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bse1I	ACTGG	1 cut(s)	72
Bse21I	CCTNAGG	1 cut(s)	152
BseDI	CCNNGG	2 cut(s)	126, 319
BseNI	ACTGG	1 cut(s)	72
BseXI	GCAGC	2 cut(s)	223, 257
BsgI	GTGCAG	1 cut(s)	230
BshFI	GGCC	1 cut(s)	377
BslFI	GGGAC	3 cut(s)	170, 299, 449
BsmFI	GGGAC	3 cut(s)	170, 299, 449
BsnI	GGCC	1 cut(s)	377
Bsp1407I	TGTACA	1 cut(s)	452
Bsp19I	CCATGG	1 cut(s)	126
BspACI	CCGC	2 cut(s)	117, 340
BspANI	GGCC	1 cut(s)	377
BspLI	GGNNCC	2 cut(s)	158, 287
BsrGI	TGTACA	1 cut(s)	452
BsrI	ACTGG	1 cut(s)	72
BssECI	CCNNGG	2 cut(s)	126, 319
BssT1I	CCWWGG	2 cut(s)	126, 319
Bst4CI	ACNGT	2 cut(s)	176, 208
BstAUI	TGTACA	1 cut(s)	452
BstDEI	CTNAG	2 cut(s)	152, 281
BstDSI	CCRYGG	1 cut(s)	126
BstNSI	RCATGY	1 cut(s)	347
BstV1I	GCAGC	2 cut(s)	223, 257
Bsu36I	CCTNAGG	1 cut(s)	152
BsuRI	GGCC	1 cut(s)	377
BtgI	CCRYGG	1 cut(s)	126
Cfr13I	GGNCC	2 cut(s)	157, 286
Csp6I	GTAC	4 cut(s)	65, 98, 172, 453
CviAII	CATG	3 cut(s)	127, 235, 344
CviJI	RGCY	6 cut(s)	45, 248, 260, 280, 296, 377
CviKI_1	RGCY	6 cut(s)	45, 248, 260, 280, 296, 377
CviQI	GTAC	4 cut(s)	65, 98, 172, 453
DdeI	CTNAG	2 cut(s)	152, 281
EaeI	YGGCCR	1 cut(s)	375
EciI	GGCGGA	1 cut(s)	132
Eco130I	CCWWGG	2 cut(s)	126, 319
Eco47I	GGWCC	2 cut(s)	157, 286
Eco81I	CCTNAGG	1 cut(s)	152
EcoT14I	CCWWGG	2 cut(s)	126, 319
ErhI	CCWWGG	2 cut(s)	126, 319
FaeI	CATG	3 cut(s)	130, 238, 347
FaqI	GGGAC	3 cut(s)	170, 299, 449
FatI	CATG	3 cut(s)	126, 234, 343
Fnu4HI	GCNGC	3 cut(s)	212, 246, 341
Fsp4HI	GCNGC	3 cut(s)	212, 246, 341
GluI	GCNGC	3 cut(s)	212, 246, 341
GsuI	CTGGAG	1 cut(s)	89
HaeIII	GGCC	1 cut(s)	377
Hin1II	CATG	3 cut(s)	130, 238, 347
HinfI	GANTC	5 cut(s)	81, 186, 315, 325, 442
HphI	GGTGA	5 cut(s)	62, 100, 214, 280, 343
Hpy166II	GTNNAC	1 cut(s)	179
Hpy188I	TCNGA	1 cut(s)	408
Hpy8I	GTNNAC	1 cut(s)	179
HpyCH4III	ACNGT	2 cut(s)	176, 208
HpyCH4V	TGCA	4 cut(s)	211, 230, 245, 359
HpyF3I	CTNAG	2 cut(s)	152, 281
Hsp92II	CATG	3 cut(s)	130, 238, 347
LpnPI	CCDG	3 cut(s)	33, 53, 314
Lsp1109I	GCAGC	2 cut(s)	223, 257
LweI	GCATC	2 cut(s)	45, 223
MaeIII	GTNAC	2 cut(s)	202, 439
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	1 cut(s)	274
MluNI	TGGCCA	1 cut(s)	377
MlyI	GAGTC	4 cut(s)	90, 195, 324, 436
Mox20I	TGGCCA	1 cut(s)	377
MscI	TGGCCA	1 cut(s)	377
MseI	TTAA	4 cut(s)	306, 402, 417, 472
MslI	CAYNNNNRTG	1 cut(s)	266
Msp20I	TGGCCA	1 cut(s)	377
NcoI	CCATGG	1 cut(s)	126
NlaIII	CATG	3 cut(s)	130, 238, 347
NlaIV	GGNNCC	2 cut(s)	158, 287
NmuCI	GTSAC	2 cut(s)	202, 439
NspI	RCATGY	1 cut(s)	347
OliI	CACNNNNGTG	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	325
PkrI	GCNGC	3 cut(s)	213, 247, 342
PleI	GAGTC	4 cut(s)	89, 194, 323, 436
PpsI	GAGTC	4 cut(s)	89, 194, 323, 436
PshBI	ATTAAT	1 cut(s)	402
PspN4I	GGNNCC	2 cut(s)	158, 287
PspPI	GGNCC	2 cut(s)	157, 286
RsaI	GTAC	4 cut(s)	66, 99, 173, 454
RsaNI	GTAC	4 cut(s)	65, 98, 172, 453
RseI	CAYNNNNRTG	1 cut(s)	266
SaqAI	TTAA	4 cut(s)	306, 402, 417, 472
SatI	GCNGC	3 cut(s)	212, 246, 341
Sau96I	GGNCC	2 cut(s)	157, 286
SchI	GAGTC	4 cut(s)	90, 195, 324, 436
SetI	ASST	1 cut(s)	47
SfaNI	GCATC	2 cut(s)	45, 223
SinI	GGWCC	2 cut(s)	157, 286
SmiMI	CAYNNNNRTG	1 cut(s)	266
Sse9I	AATT	1 cut(s)	274
SsiI	CCGC	2 cut(s)	117, 340
StyI	CCWWGG	2 cut(s)	126, 319
TaaI	ACNGT	2 cut(s)	176, 208
TasI	AATT	1 cut(s)	274
TatI	WGTACW	2 cut(s)	171, 452
TauI	GCSGC	1 cut(s)	343
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	4 cut(s)	306, 402, 417, 472
Tru9I	TTAA	4 cut(s)	306, 402, 417, 472
TseFI	GTSAC	2 cut(s)	202, 439
TseI	GCWGC	2 cut(s)	211, 245
Tsp45I	GTSAC	2 cut(s)	202, 439
TspDTI	ATGAA	1 cut(s)	425
VpaK11BI	GGWCC	2 cut(s)	157, 286
VspI	ATTAAT	1 cut(s)	402
XceI	RCATGY	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.