Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006887

Physical Location & Seq

Genomic Coordinates Forward (+)

13063994 .. 13066128

Gene Structure 2135 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g09900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGAATCACTTGGGAAGTGATCAAGCGAATAAAGAGCGTCGGGCTGGAAACAGAAAAGCACACGCTTTGTCTACCCTAGAGGGTTACAGTGGTTATGGAGCTGAACAAGGTGAAAAGCTACTAAGAGCTTCAATTGCCTCAACATTTTATGACAACCTTGGCATCGTGGAAGATGAAATCTTTGTTTCTGACGGTGCAAAATGTGACATATCCCGCCTTCAGGTTGTTTTTGGGTCTAATGTTACAATGGCAGTGCAAGATCCATCTTATCCGGCTTATGTAGACTTGAGTGTTATCATGGGCCAGACTGGACAGTATCAGAAAGATGTTGAAAAGTTCAGAAATATCGAGTACATGAGGTGTACTCCTGAGAATGGTTTCTTTCCTGATTTATGCGCTGTTTCTCGAACAGATATCATATTTTTTTGCTCTCCAAACAACCCTACTGGTTCTGCTGCAACAAGGGAGCAACTGACTCAACTTGTACAGTTTGCTAAGGAGAACGGGTCAATCATAGTATACGATTCGGCATATGCCATGTATATGTCAGATGACAATCCACGGTCAATCTTTGAAATCCCTGGAGCTAAAGAGATTGCAATTGAGACATCATCGTTCAGTAAGTATGCAGGATTCACAGGAGTTCGTTTGGGGTGGACTGTTGTTCCAAAGCAGTTGCTCTTTTCAGATGGATTCCCTGTTGCCAAGGACTTCAACCGCATTGTTTGTACTTGCTTCAATGGTGCATCCAATATATCCCAAGCTGGCGGTCTTGCTTGCCTTGCGCCAACAGGCCTTAAGGCTATGCGCGAGGTGATTGGTTACTACAAGAAAAATGCTGAAATAATTGTGGAGACGTTCGAGTCTCTTGGTTTTAAGGTGTATGGAGGGAAGAATGCACCCTTTGTGTGGGTGCACTTCCCTGGCCGAAGCTCATGGGATGTATTCAGTGAGATTCTTGAGAAGACTCATGTGGTCACCATGCCTGGAAGTGGTTTCGGACCTGGGGGTGAAGGTTTCGTCAGGGTTAGCGCGTTTGGTCACCGGAAAAATGTATTAGAAGCTTGCGAAAGATTCAAGCAATTATACAATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008483 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009627 GO:0009719 GO:0009725 GO:0009735 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010285 GO:0014070 GO:0016740 GO:0016769 GO:0023052 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046677 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0098542 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00300 ko01100 ko01110 ko01130 ko01230 map00300 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

366

Amino Acids

40.17

Weight (kDa)

6.03

Isoelectric Point (pI)

45.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	23 - 359	1.3e-34	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33680
fragaria_vesca	FvH4_2g02700 FvH4_2g02700
malus_domestica	MD00G1080600.v1.1 MD05G1111000.v1.1 MD10G1114500.v1.1
prunus_persica	Prupe.8G156000_v2.0.a1
pyrus_communis	pycom05g10690 pycom10g09890 pycom10g09900
rosa_chinensis	RchiOBHm_Chr6g0247121
rosa_laevigata	RLG00000015219 RLG00000030359 RLG00000030363
rosa_multiflora	Rmu_sc0004577.1_g000011 Rmu_sc0030830.1_g000004
rosa_roxburghii	Rroxscaffold_3G00276080 Rroxscaffold_7G00214330
rosa_rugosa	Rorug05G0522500 Rorug05G0522600
rosa_samantha	Rh6AG037800 Rh6BG032400 Rh6BG032700 Rh6CG033500 Rh6DG031200
rosa_wichuraiana	Rw6G003220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	862
AccI	GTMKAC	3 cut(s)	71, 282, 519
AccII	CGCG	2 cut(s)	810, 1034
AciI	CCGC	3 cut(s)	214, 718, 768
AclWI	GGATC	1 cut(s)	254
AcoI	YGGCCR	1 cut(s)	925
AcuI	CTGAAG	1 cut(s)	203
AfaI	GTAC	4 cut(s)	353, 364, 486, 730
AfiI	CCNNNNNNNGG	4 cut(s)	220, 374, 909, 992
AflII	CTTAAG	1 cut(s)	797
AgsI	TTSAA	6 cut(s)	132, 332, 575, 715, 739, 1078
AjnI	CCWGG	4 cut(s)	580, 922, 985, 1003
AluBI	AGCT	7 cut(s)	101, 118, 128, 587, 764, 933, 1064
AluI	AGCT	7 cut(s)	101, 118, 128, 587, 764, 933, 1064
Alw21I	GWGCWC	1 cut(s)	918
Alw26I	GTCTC	3 cut(s)	599, 848, 870
Alw44I	GTGCAC	1 cut(s)	914
AlwI	GGATC	1 cut(s)	254
AoxI	GGCC	3 cut(s)	301, 793, 925
ApaLI	GTGCAC	1 cut(s)	914
ApeKI	GCWGC	1 cut(s)	455
Asp700I	GAANNNNTTC	1 cut(s)	377
AspLEI	GCGC	4 cut(s)	398, 787, 810, 1034
AspS9I	GGNCC	2 cut(s)	301, 1001
AsuHPI	GGTGA	5 cut(s)	122, 826, 970, 1022, 1034
AvaII	GGWCC	1 cut(s)	1001
BaeGI	GKGCMC	1 cut(s)	918
BbsI	GAAGAC	1 cut(s)	971
Bbv12I	GWGCWC	1 cut(s)	918
BbvI	GCAGC	1 cut(s)	442
BccI	CCATC	2 cut(s)	271, 683
BciT130I	CCWGG	4 cut(s)	582, 924, 987, 1005
BclI	TGATCA	1 cut(s)	19
BcoDI	GTCTC	3 cut(s)	599, 848, 870
BfaI	CTAG	1 cut(s)	77
BfrI	CTTAAG	1 cut(s)	797
BisI	GCNGC	1 cut(s)	456
BlsI	GCNGC	1 cut(s)	457
Bme1390I	CCNGG	4 cut(s)	582, 924, 987, 1005
Bme18I	GGWCC	1 cut(s)	1001
BmgT120I	GGNCC	2 cut(s)	301, 1001
BmrFI	CCNGG	4 cut(s)	582, 924, 987, 1005
BmsI	GCATC	2 cut(s)	171, 755
BpiI	GAAGAC	1 cut(s)	971
BplI	GAGNNNNNCTC	2 cut(s)	349, 381
BpmI	CTGGAG	1 cut(s)	603
Bpu10I	CCTNAGC	1 cut(s)	495
BpuEI	CTTGAG	2 cut(s)	307, 980
BsaBI	GATNNNNATC	1 cut(s)	555
BsaJI	CCNNGG	6 cut(s)	157, 560, 580, 705, 922, 1004
BsaWI	WCCGGW	1 cut(s)	1044
BsaXI	ACNNNNNCTCC	2 cut(s)	491, 521
Bsc4I	CCNNNNNNNGG	4 cut(s)	220, 374, 909, 992
Bse1I	ACTGG	2 cut(s)	313, 451
Bse8I	GATNNNNATC	1 cut(s)	555
BseBI	CCWGG	4 cut(s)	582, 924, 987, 1005
BseDI	CCNNGG	6 cut(s)	157, 560, 580, 705, 922, 1004
BseGI	GGATG	2 cut(s)	746, 946
BseJI	GATNNNNATC	1 cut(s)	555
BseLI	CCNNNNNNNGG	4 cut(s)	220, 374, 909, 992
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	2 cut(s)	313, 451
BseSI	GKGCMC	1 cut(s)	918
BseXI	GCAGC	1 cut(s)	442
Bsh1236I	CGCG	2 cut(s)	810, 1034
BshFI	GGCC	3 cut(s)	303, 795, 927
BsiHKAI	GWGCWC	1 cut(s)	918
BsiSI	CCGG	2 cut(s)	272, 1045
BslI	CCNNNNNNNGG	4 cut(s)	220, 374, 909, 992
BsmAI	GTCTC	3 cut(s)	599, 848, 870
BsmBI	CGTCTC	1 cut(s)	848
BsmI	GAATGC	1 cut(s)	901
BsnI	GGCC	3 cut(s)	303, 795, 927
Bsp1286I	GDGCHC	1 cut(s)	918
Bsp1407I	TGTACA	1 cut(s)	484
Bsp143I	GATC	2 cut(s)	19, 259
BspACI	CCGC	3 cut(s)	214, 718, 768
BspANI	GGCC	3 cut(s)	303, 795, 927
BspCNI	CTCAG	1 cut(s)	361
BspFNI	CGCG	2 cut(s)	810, 1034
BspPI	GGATC	1 cut(s)	254
BspTI	CTTAAG	1 cut(s)	797
BsrGI	TGTACA	1 cut(s)	484
BsrI	ACTGG	2 cut(s)	313, 451
BssECI	CCNNGG	6 cut(s)	157, 560, 580, 705, 922, 1004
BssMI	GATC	2 cut(s)	19, 259
BssNAI	GTATAC	1 cut(s)	520
BssT1I	CCWWGG	2 cut(s)	157, 705
Bst1107I	GTATAC	1 cut(s)	520
Bst2UI	CCWGG	4 cut(s)	582, 924, 987, 1005
Bst4CI	ACNGT	6 cut(s)	89, 194, 315, 489, 564, 661
BstAFI	CTTAAG	1 cut(s)	797
BstAUI	TGTACA	1 cut(s)	484
BstC8I	GCNNGC	3 cut(s)	766, 778, 1066
BstDEI	CTNAG	3 cut(s)	122, 369, 495
BstDSI	CCRYGG	1 cut(s)	560
BstEII	GGTNACC	2 cut(s)	976, 1040
BstF5I	GGATG	2 cut(s)	746, 946
BstFNI	CGCG	2 cut(s)	810, 1034
BstHHI	GCGC	4 cut(s)	398, 787, 810, 1034
BstKTI	GATC	2 cut(s)	22, 262
BstMAI	GTCTC	3 cut(s)	599, 848, 870
BstMBI	GATC	2 cut(s)	19, 259
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 782
BstNI	CCWGG	4 cut(s)	582, 924, 987, 1005
BstPI	GGTNACC	2 cut(s)	976, 1040
BstSCI	CCNGG	4 cut(s)	580, 922, 985, 1003
BstSLI	GKGCMC	1 cut(s)	918
BstUI	CGCG	2 cut(s)	810, 1034
BstV1I	GCAGC	1 cut(s)	442
BstV2I	GAAGAC	1 cut(s)	971
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BstZ17I	GTATAC	1 cut(s)	520
BsuRI	GGCC	3 cut(s)	303, 795, 927
BtgI	CCRYGG	1 cut(s)	560
BtsCI	GGATG	2 cut(s)	746, 946
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	3 cut(s)	94, 258, 955
Cac8I	GCNNGC	3 cut(s)	766, 778, 1066
CfoI	GCGC	4 cut(s)	398, 787, 810, 1034
Cfr13I	GGNCC	2 cut(s)	301, 1001
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	4 cut(s)	352, 363, 485, 729
CviAII	CATG	6 cut(s)	298, 355, 538, 936, 971, 982
CviQI	GTAC	4 cut(s)	352, 363, 485, 729
DdeI	CTNAG	3 cut(s)	122, 369, 495
DpnI	GATC	2 cut(s)	21, 261
DpnII	GATC	2 cut(s)	19, 259
DrdI	GACNNNNNNGTC	1 cut(s)	862
DseDI	GACNNNNNNGTC	1 cut(s)	862
EaeI	YGGCCR	1 cut(s)	925
Eco130I	CCWWGG	2 cut(s)	157, 705
Eco147I	AGGCCT	1 cut(s)	795
Eco32I	GATATC	1 cut(s)	415
Eco47I	GGWCC	1 cut(s)	1001
Eco57I	CTGAAG	1 cut(s)	203
Eco91I	GGTNACC	2 cut(s)	976, 1040
EcoO65I	GGTNACC	2 cut(s)	976, 1040
EcoRII	CCWGG	4 cut(s)	580, 922, 985, 1003
EcoRV	GATATC	1 cut(s)	415
EcoT14I	CCWWGG	2 cut(s)	157, 705
ErhI	CCWWGG	2 cut(s)	157, 705
Esp3I	CGTCTC	1 cut(s)	848
FaeI	CATG	6 cut(s)	301, 358, 541, 939, 974, 985
FatI	CATG	6 cut(s)	297, 354, 537, 935, 970, 981
FauI	CCCGC	1 cut(s)	221
FauNDI	CATATG	1 cut(s)	532
FbaI	TGATCA	1 cut(s)	19
FblI	GTMKAC	3 cut(s)	71, 282, 519
Fnu4HI	GCNGC	1 cut(s)	456
FokI	GGATG	2 cut(s)	733, 953
Fsp4HI	GCNGC	1 cut(s)	456
FspBI	CTAG	1 cut(s)	77
GlaI	GCGC	4 cut(s)	397, 786, 809, 1033
GluI	GCNGC	1 cut(s)	456
GsuI	CTGGAG	1 cut(s)	603
HaeIII	GGCC	3 cut(s)	303, 795, 927
HapII	CCGG	2 cut(s)	272, 1045
HgaI	GACGC	1 cut(s)	26
HhaI	GCGC	4 cut(s)	398, 787, 810, 1034
Hin1II	CATG	6 cut(s)	301, 358, 541, 939, 974, 985
Hin6I	GCGC	4 cut(s)	396, 785, 808, 1032
HinP1I	GCGC	4 cut(s)	396, 785, 808, 1032
HindIII	AAGCTT	1 cut(s)	1062
HinfI	GANTC	9 cut(s)	4, 475, 524, 633, 693, 863, 955, 967, 1074
HpaII	CCGG	2 cut(s)	272, 1045
HphI	GGTGA	5 cut(s)	122, 826, 970, 1022, 1034
Hpy166II	GTNNAC	6 cut(s)	72, 283, 363, 520, 657, 916
Hpy188I	TCNGA	6 cut(s)	190, 321, 341, 550, 688, 1001
Hpy188III	TCNNGA	4 cut(s)	368, 386, 405, 959
Hpy8I	GTNNAC	6 cut(s)	72, 283, 363, 520, 657, 916
Hpy99I	CGWCG	1 cut(s)	42
HpyAV	CCTTC	2 cut(s)	227, 1007
HpyCH4III	ACNGT	6 cut(s)	89, 194, 315, 489, 564, 661
HpyCH4IV	ACGT	1 cut(s)	857
HpyCH4V	TGCA	8 cut(s)	197, 256, 458, 599, 629, 746, 899, 916
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 782
HpyF3I	CTNAG	3 cut(s)	122, 369, 495
HpySE526I	ACGT	1 cut(s)	857
Hsp92II	CATG	6 cut(s)	301, 358, 541, 939, 974, 985
HspAI	GCGC	4 cut(s)	396, 785, 808, 1032
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	2 cut(s)	19, 259
LmnI	GCTCC	3 cut(s)	98, 466, 584
Lsp1109I	GCAGC	1 cut(s)	442
LweI	GCATC	2 cut(s)	171, 755
MaeI	CTAG	1 cut(s)	77
MaeII	ACGT	1 cut(s)	857
MaeIII	GTNAC	6 cut(s)	83, 203, 241, 821, 976, 1040
MalI	GATC	2 cut(s)	21, 261
MboI	GATC	2 cut(s)	19, 259
MboII	GAAGA	3 cut(s)	182, 904, 976
MfeI	CAATTG	2 cut(s)	132, 600
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	1 cut(s)	918
MluCI	AATT	4 cut(s)	132, 600, 846, 1082
MlyI	GAGTC	3 cut(s)	469, 872, 961
MnlI	CCTC	5 cut(s)	73, 148, 351, 805, 881
MroXI	GAANNNNTTC	1 cut(s)	377
MseI	TTAA	2 cut(s)	798, 876
MslI	CAYNNNNRTG	1 cut(s)	542
MspCI	CTTAAG	1 cut(s)	797
MspI	CCGG	2 cut(s)	272, 1045
MspR9I	CCNGG	4 cut(s)	582, 924, 987, 1005
MunI	CAATTG	2 cut(s)	132, 600
Mva1269I	GAATGC	1 cut(s)	901
MvaI	CCWGG	4 cut(s)	582, 924, 987, 1005
MvnI	CGCG	2 cut(s)	810, 1034
MwoI	GCNNNNNNNGC	2 cut(s)	134, 782
NdeI	CATATG	1 cut(s)	532
NdeII	GATC	2 cut(s)	19, 259
NlaIII	CATG	6 cut(s)	301, 358, 541, 939, 974, 985
NmuCI	GTSAC	3 cut(s)	203, 976, 1040
PceI	AGGCCT	1 cut(s)	795
PctI	GAATGC	1 cut(s)	901
PdmI	GAANNNNTTC	1 cut(s)	377
PfeI	GAWTC	6 cut(s)	4, 524, 633, 693, 955, 1074
PkrI	GCNGC	1 cut(s)	457
PleI	GAGTC	3 cut(s)	469, 871, 961
PpsI	GAGTC	3 cut(s)	469, 871, 961
Psp6I	CCWGG	4 cut(s)	580, 922, 985, 1003
PspEI	GGTNACC	2 cut(s)	976, 1040
PspGI	CCWGG	4 cut(s)	580, 922, 985, 1003
PspPI	GGNCC	2 cut(s)	301, 1001
PsuI	RGATCY	1 cut(s)	259
RsaI	GTAC	4 cut(s)	353, 364, 486, 730
RsaNI	GTAC	4 cut(s)	352, 363, 485, 729
RseI	CAYNNNNRTG	1 cut(s)	542
SaqAI	TTAA	2 cut(s)	798, 876
SatI	GCNGC	1 cut(s)	456
Sau3AI	GATC	2 cut(s)	19, 259
Sau96I	GGNCC	2 cut(s)	301, 1001
SchI	GAGTC	3 cut(s)	469, 872, 961
ScrFI	CCNGG	4 cut(s)	582, 924, 987, 1005
SduI	GDGCHC	1 cut(s)	918
SfaNI	GCATC	2 cut(s)	171, 755
SinI	GGWCC	1 cut(s)	1001
SmiMI	CAYNNNNRTG	1 cut(s)	542
SmlI	CTYRAG	3 cut(s)	286, 797, 959
SmoI	CTYRAG	3 cut(s)	286, 797, 959
Sse9I	AATT	4 cut(s)	132, 600, 846, 1082
SseBI	AGGCCT	1 cut(s)	795
SsiI	CCGC	3 cut(s)	214, 718, 768
SspI	AATATT	1 cut(s)	1093
SspMI	CTAG	1 cut(s)	77
StuI	AGGCCT	1 cut(s)	795
StyD4I	CCNGG	4 cut(s)	580, 922, 985, 1003
StyI	CCWWGG	2 cut(s)	157, 705
TaaI	ACNGT	6 cut(s)	89, 194, 315, 489, 564, 661
TaiI	ACGT	1 cut(s)	860
TaqI	TCGA	3 cut(s)	348, 406, 861
TasI	AATT	4 cut(s)	132, 600, 846, 1082
TatI	WGTACW	4 cut(s)	351, 362, 484, 728
TfiI	GAWTC	6 cut(s)	4, 524, 633, 693, 955, 1074
Tru1I	TTAA	2 cut(s)	798, 876
Tru9I	TTAA	2 cut(s)	798, 876
TscAI	CASTG	3 cut(s)	94, 258, 955
TseFI	GTSAC	3 cut(s)	203, 976, 1040
TseI	GCWGC	1 cut(s)	455
Tsp45I	GTSAC	3 cut(s)	203, 976, 1040
TspDTI	ATGAA	2 cut(s)	17, 189
TspRI	CASTG	3 cut(s)	94, 258, 955
Vha464I	CTTAAG	1 cut(s)	797
VneI	GTGCAC	1 cut(s)	914
VpaK11BI	GGWCC	1 cut(s)	1001
XmiI	GTMKAC	3 cut(s)	71, 282, 519
XmnI	GAANNNNTTC	1 cut(s)	377
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.