AT4G33680

L,L-diaminopimelate aminotransferase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
16171681 .. 16174723
3043 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G33680.1

Sequence Viewer

Length: 1386 bp
ATGTCGTCGACCCATCAGTTAGTTTCTTCGATGATCTCTTCTTCCTCATCCACTTTCTTAGCCCCTTCAAATTTTAATCTCAGAACTCGAAATGCTTGCTTACCCATGGCAAAACGGGTCAATACTTGCAAATGTGTTGCTACGCCGCAAGAGAAGATCGAGTATAAGACCAAAGTGTCACGGAATTCAAACATGTCCAAACTTCAGGCTGGATACCTATTCCCGGAGATTGCAAGAAGAAGGTCTGCACACTTGTTGAAATATCCAGATGCACAAGTTATAAGTCTTGGAATAGGCGACACAACTGAGCCAATTCCTGAAGTGATCACTTCTGCTATGGCAAAGAAAGCTCATGAGTTGTCAACAATAGAGGGATATAGTGGTTATGGTGCTGAACAAGGTGCAAAGCCACTGAGAGCTGCTATTGCGAAAACATTCTACGGTGGCCTTGGCATAGGGGATGATGACGTTTTTGTTTCTGATGGAGCTAAATGTGATATCTCACGTCTCCAGGTTATGTTTGGTTCCAATGTTACAATTGCTGTTCAGGATCCTTCATATCCGGCTTATGTGGACTCCAGTGTTATTATGGGTCAGACTGGGCAATTTAACACTGATGTGCAAAAGTATGGAAACATCGAGTACATGAGATGCACTCCAGAGAATGGCTTCTTTCCCGACTTGTCCACCGTTGGCAGGACAGATATAATTTTCTTCTGTTCCCCAAATAACCCTACGGGTGCTGCTGCCACGAGAGAGCAACTAACGCAGTTAGTTGAGTTTGCAAAGAAGAACGGTTCTATAATAGTGTATGATTCCGCCTATGCAATGTACATGTCTGATGATAACCCACGATCCATCTTCGAAATCCCTGGAGCAGAGGAGGTCGCTATGGAGACAGCTTCGTTCAGCAAATATGCTGGTTTCACTGGAGTTCGACTTGGTTGGACTGTCATCCCGAAAAAGCTACTCTATTCAGACGGTTTCCCTGTTGCCAAAGACTTCAATCGGATTATCTGCACTTGTTTCAATGGTGCATCTAATATCTCTCAAGCTGGTGCTCTTGCTTGCCTTACACCCGAAGGACTTGAGGCAATGCATAAGGTGATTGGATTCTATAAAGAAAACACAAACATAATCATTGACACATTCACATCTCTCGGGTATGATGTATATGGAGGAAAGAATGCGCCTTACGTATGGGTTCACTTCCCGAACCAAAGCTCATGGGATGTGTTTGCTGAGATTCTGGAGAAGACTCATGTGGTTACAACTCCAGGAAGTGGGTTTGGACCAGGGGGTGAAGGGTTCGTTCGTGTCAGTGCCTTTGGTCACAGAGAGAACATCTTAGAGGCATGTCGAAGATTCAAGCAGCTTTACAAATGA

Protein Analysis

461

Amino Acids

50.4

Weight (kDa)

7.02

Isoelectric Point (pI)

51.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 92 - 456 2.4e-37 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 281
AasI GACNNNNNNGTC 1 cut(s) 175
AccB7I CCANNNNNTGG 2 cut(s) 665, 1283
AccI GTMKAC 1 cut(s) 8
AciI CCGC 2 cut(s) 146, 819
AclWI GGATC 3 cut(s) 545, 558, 849
AcsI RAATTY 2 cut(s) 70, 184
AcuI CTGAAG 2 cut(s) 188, 339
AfaI GTAC 2 cut(s) 644, 833
AfiI CCNNNNNNNGG 4 cut(s) 223, 665, 696, 1283
AflIII ACRYGT 2 cut(s) 192, 834
AgsI TTSAA 6 cut(s) 69, 189, 259, 1006, 1030, 1369
AjiI CACGTC 1 cut(s) 506
AjnI CCWGG 4 cut(s) 510, 871, 1276, 1294
AleI CACNNNNGTG 1 cut(s) 617
AluBI AGCT 8 cut(s) 350, 419, 488, 902, 967, 1055, 1224, 1375
AluI AGCT 8 cut(s) 350, 419, 488, 902, 967, 1055, 1224, 1375
Alw21I GWGCWC 1 cut(s) 1063
Alw26I GTCTC 2 cut(s) 512, 890
AlwI GGATC 3 cut(s) 545, 558, 849
Ama87I CYCGRG 1 cut(s) 1160
AoxI GGCC 1 cut(s) 445
ApeKI GCWGC 4 cut(s) 419, 743, 746, 1372
ApoI RAATTY 2 cut(s) 70, 184
Asp700I GAANNNNTTC 2 cut(s) 434, 668
AspLEI GCGC 1 cut(s) 1192
AspS9I GGNCC 1 cut(s) 1292
AsuC2I CCSGG 1 cut(s) 224
AsuHPI GGTGA 2 cut(s) 1117, 1313
AsuII TTCGAA 1 cut(s) 864
AvaI CYCGRG 1 cut(s) 1160
AvaII GGWCC 1 cut(s) 1292
BamHI GGATCC 1 cut(s) 550
BauI CACGAG 1 cut(s) 751
BbsI GAAGAC 1 cut(s) 1262
Bbv12I GWGCWC 1 cut(s) 1063
BbvI GCAGC 3 cut(s) 406, 730, 733
BccI CCATC 3 cut(s) 21, 476, 866
BcgI CGANNNNNNTGC 2 cut(s) 78, 112
BciT130I CCWGG 4 cut(s) 512, 873, 1278, 1296
BciVI GTATCC 1 cut(s) 206
BclI TGATCA 1 cut(s) 324
BcnI CCSGG 1 cut(s) 224
BcoDI GTCTC 2 cut(s) 512, 890
BfuI GTATCC 1 cut(s) 206
BisI GCNGC 5 cut(s) 146, 420, 744, 747, 1373
BlsI GCNGC 5 cut(s) 147, 421, 745, 748, 1374
Bme1390I CCNGG 5 cut(s) 224, 512, 873, 1278, 1296
Bme18I GGWCC 1 cut(s) 1292
BmeT110I CYCGRG 1 cut(s) 1160
BmgBI CACGTC 1 cut(s) 506
BmgT120I GGNCC 1 cut(s) 1292
BmiI GGNNCC 2 cut(s) 526, 552
BmrFI CCNGG 5 cut(s) 224, 512, 873, 1278, 1296
BmrI ACTGGG 1 cut(s) 609
BmsI GCATC 3 cut(s) 259, 641, 1046
BmuI ACTGGG 1 cut(s) 609
BpiI GAAGAC 1 cut(s) 1262
BplI GAGNNNNNCTC 2 cut(s) 640, 672
BpmI CTGGAG 7 cut(s) 494, 562, 642, 894, 951, 1260, 1271
Bpu14I TTCGAA 1 cut(s) 864
BpuEI CTTGAG 2 cut(s) 1035, 1109
BpuMI CCSGG 1 cut(s) 224
BsaAI YACGTR 1 cut(s) 1198
BsaJI CCNNGG 4 cut(s) 105, 448, 871, 1295
Bsc4I CCNNNNNNNGG 4 cut(s) 223, 665, 696, 1283
Bse1I ACTGG 3 cut(s) 579, 604, 934
Bse3DI GCAATG 2 cut(s) 834, 1101
BseBI CCWGG 4 cut(s) 512, 873, 1278, 1296
BseDI CCNNGG 4 cut(s) 105, 448, 871, 1295
BseGI GGATG 4 cut(s) 47, 466, 954, 1237
BseLI CCNNNNNNNGG 4 cut(s) 223, 665, 696, 1283
BseMI GCAATG 2 cut(s) 834, 1101
BseMII CTCAG 4 cut(s) 94, 297, 404, 1233
BseNI ACTGG 3 cut(s) 579, 604, 934
BseRI GAGGAG 1 cut(s) 896
BseXI GCAGC 3 cut(s) 406, 730, 733
BsgI GTGCAG 2 cut(s) 231, 1003
BshFI GGCC 1 cut(s) 447
BsiHKAI GWGCWC 1 cut(s) 1063
BsiHKCI CYCGRG 1 cut(s) 1160
BsiSI CCGG 2 cut(s) 224, 563
BslI CCNNNNNNNGG 4 cut(s) 223, 665, 696, 1283
BsmAI GTCTC 2 cut(s) 512, 890
BsmBI CGTCTC 1 cut(s) 512
BsmI GAATGC 1 cut(s) 1192
BsnI GGCC 1 cut(s) 447
BsoBI CYCGRG 1 cut(s) 1160
Bsp119I TTCGAA 1 cut(s) 864
Bsp1286I GDGCHC 1 cut(s) 1063
Bsp1407I TGTACA 1 cut(s) 831
Bsp143I GATC 5 cut(s) 33, 156, 324, 550, 854
Bsp19I CCATGG 1 cut(s) 105
BspACI CCGC 2 cut(s) 146, 819
BspANI GGCC 1 cut(s) 447
BspCNI CTCAG 4 cut(s) 93, 298, 405, 1234
BspHI TCATGA 1 cut(s) 352
BspLI GGNNCC 2 cut(s) 526, 552
BspPI GGATC 3 cut(s) 545, 558, 849
BspT104I TTCGAA 1 cut(s) 864
BsrDI GCAATG 2 cut(s) 834, 1101
BsrGI TGTACA 1 cut(s) 831
BsrI ACTGG 3 cut(s) 579, 604, 934
BssECI CCNNGG 4 cut(s) 105, 448, 871, 1295
BssMI GATC 5 cut(s) 33, 156, 324, 550, 854
BssSI CACGAG 1 cut(s) 751
BssT1I CCWWGG 2 cut(s) 105, 448
Bst2BI CACGAG 1 cut(s) 751
Bst2UI CCWGG 4 cut(s) 512, 873, 1278, 1296
Bst4CI ACNGT 5 cut(s) 443, 691, 797, 952, 983
Bst6I CTCTTC 1 cut(s) 43
BstAUI TGTACA 1 cut(s) 831
BstBAI YACGTR 1 cut(s) 1198
BstBI TTCGAA 1 cut(s) 864
BstC8I GCNNGC 2 cut(s) 97, 1069
BstDEI CTNAG 6 cut(s) 58, 80, 306, 413, 1242, 1348
BstDSI CCRYGG 1 cut(s) 105
BstF5I GGATG 4 cut(s) 47, 466, 954, 1237
BstHHI GCGC 1 cut(s) 1192
BstKTI GATC 5 cut(s) 36, 159, 327, 553, 857
BstMAI GTCTC 2 cut(s) 512, 890
BstMBI GATC 5 cut(s) 33, 156, 324, 550, 854
BstMWI GCNNNNNNNGC 3 cut(s) 347, 425, 766
BstNI CCWGG 4 cut(s) 512, 873, 1278, 1296
BstNSI RCATGY 3 cut(s) 196, 838, 1359
BstSCI CCNGG 5 cut(s) 222, 510, 871, 1276, 1294
BstSNI TACGTA 1 cut(s) 1198
BstV1I GCAGC 3 cut(s) 406, 730, 733
BstV2I GAAGAC 1 cut(s) 1262
BstX2I RGATCY 1 cut(s) 550
BstYI RGATCY 1 cut(s) 550
BsuI GTATCC 1 cut(s) 206
BsuRI GGCC 1 cut(s) 447
BtgI CCRYGG 1 cut(s) 105
BtrI CACGTC 1 cut(s) 506
BtsCI GGATG 4 cut(s) 47, 466, 954, 1237
BtsIMutI CAGTG 5 cut(s) 410, 586, 612, 927, 1327
Cac8I GCNNGC 2 cut(s) 97, 1069
CciI TCATGA 1 cut(s) 352
CfoI GCGC 1 cut(s) 1192
Cfr13I GGNCC 1 cut(s) 1292
Csp6I GTAC 2 cut(s) 643, 832
CviAII CATG 8 cut(s) 106, 193, 353, 646, 835, 1227, 1262, 1356
CviQI GTAC 2 cut(s) 643, 832
DdeI CTNAG 6 cut(s) 58, 80, 306, 413, 1242, 1348
DpnI GATC 5 cut(s) 35, 158, 326, 552, 856
DpnII GATC 5 cut(s) 33, 156, 324, 550, 854
DrdI GACNNNNNNGTC 1 cut(s) 175
DseDI GACNNNNNNGTC 1 cut(s) 175
Eam1104I CTCTTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 43
EciI GGCGGA 1 cut(s) 808
Eco105I TACGTA 1 cut(s) 1198
Eco130I CCWWGG 2 cut(s) 105, 448
Eco32I GATATC 1 cut(s) 499
Eco47I GGWCC 1 cut(s) 1292
Eco57I CTGAAG 2 cut(s) 188, 339
Eco88I CYCGRG 1 cut(s) 1160
EcoRI GAATTC 1 cut(s) 184
EcoRII CCWGG 4 cut(s) 510, 871, 1276, 1294
EcoRV GATATC 1 cut(s) 499
EcoT14I CCWWGG 2 cut(s) 105, 448
EcoT22I ATGCAT 1 cut(s) 1101
ErhI CCWWGG 2 cut(s) 105, 448
Esp3I CGTCTC 1 cut(s) 512
FaeI CATG 8 cut(s) 109, 196, 356, 649, 838, 1230, 1265, 1359
FatI CATG 8 cut(s) 105, 192, 352, 645, 834, 1226, 1261, 1355
FbaI TGATCA 1 cut(s) 324
FblI GTMKAC 1 cut(s) 8
Fnu4HI GCNGC 5 cut(s) 146, 420, 744, 747, 1373
FokI GGATG 4 cut(s) 34, 473, 941, 1244
Fsp4HI GCNGC 5 cut(s) 146, 420, 744, 747, 1373
GlaI GCGC 1 cut(s) 1191
GluI GCNGC 5 cut(s) 146, 420, 744, 747, 1373
GsuI CTGGAG 7 cut(s) 494, 562, 642, 894, 951, 1260, 1271
HaeIII GGCC 1 cut(s) 447
HapII CCGG 2 cut(s) 224, 563
HhaI GCGC 1 cut(s) 1192
Hin1II CATG 8 cut(s) 109, 196, 356, 649, 838, 1230, 1265, 1359
Hin6I GCGC 1 cut(s) 1190
HinP1I GCGC 1 cut(s) 1190
HincII GTYRAC 2 cut(s) 9, 363
HindII GTYRAC 2 cut(s) 9, 363
HinfI GANTC 6 cut(s) 575, 815, 1113, 1246, 1258, 1365
HpaII CCGG 2 cut(s) 224, 563
HphI GGTGA 2 cut(s) 1117, 1313
Hpy166II GTNNAC 5 cut(s) 9, 363, 574, 687, 1207
Hpy188I TCNGA 6 cut(s) 83, 481, 597, 841, 979, 1011
Hpy188III TCNNGA 9 cut(s) 266, 317, 353, 548, 659, 677, 958, 1213, 1250
Hpy8I GTNNAC 5 cut(s) 9, 363, 574, 687, 1207
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 5 cut(s) 75, 234, 564, 1076, 1298
HpyCH4III ACNGT 5 cut(s) 443, 691, 797, 952, 983
HpyCH4IV ACGT 3 cut(s) 468, 505, 1197
HpyF10VI GCNNNNNNNGC 3 cut(s) 347, 425, 766
HpyF3I CTNAG 6 cut(s) 58, 80, 306, 413, 1242, 1348
HpySE526I ACGT 3 cut(s) 468, 505, 1197
Hsp92II CATG 8 cut(s) 109, 196, 356, 649, 838, 1230, 1265, 1359
HspAI GCGC 1 cut(s) 1190
Ksp22I TGATCA 1 cut(s) 324
Kzo9I GATC 5 cut(s) 33, 156, 324, 550, 854
LmnI GCTCC 2 cut(s) 485, 875
Lsp1109I GCAGC 3 cut(s) 406, 730, 733
LweI GCATC 3 cut(s) 259, 641, 1046
MaeII ACGT 3 cut(s) 468, 505, 1197
MaeIII GTNAC 4 cut(s) 177, 532, 1267, 1331
MalI GATC 5 cut(s) 35, 158, 326, 552, 856
MboI GATC 5 cut(s) 33, 156, 324, 550, 854
MfeI CAATTG 1 cut(s) 537
MflI RGATCY 1 cut(s) 550
MhlI GDGCHC 1 cut(s) 1063
MluCI AATT 6 cut(s) 70, 184, 312, 537, 605, 708
MlyI GAGTC 2 cut(s) 569, 1252
MmeI TCCRAC 1 cut(s) 926
MnlI CCTC 7 cut(s) 55, 364, 874, 877, 1084, 1172, 1345
Mph1103I ATGCAT 1 cut(s) 1101
MroXI GAANNNNTTC 2 cut(s) 434, 668
MseI TTAA 2 cut(s) 75, 609
MslI CAYNNNNRTG 1 cut(s) 617
MspI CCGG 2 cut(s) 224, 563
MspR9I CCNGG 5 cut(s) 224, 512, 873, 1278, 1296
MunI CAATTG 1 cut(s) 537
Mva1269I GAATGC 1 cut(s) 1192
MvaI CCWGG 4 cut(s) 512, 873, 1278, 1296
MwoI GCNNNNNNNGC 3 cut(s) 347, 425, 766
NciI CCSGG 1 cut(s) 224
NcoI CCATGG 1 cut(s) 105
NdeII GATC 5 cut(s) 33, 156, 324, 550, 854
NlaIII CATG 8 cut(s) 109, 196, 356, 649, 838, 1230, 1265, 1359
NlaIV GGNNCC 2 cut(s) 526, 552
NmuCI GTSAC 2 cut(s) 177, 1331
NsiI ATGCAT 1 cut(s) 1101
NspI RCATGY 3 cut(s) 196, 838, 1359
NspV TTCGAA 1 cut(s) 864
OliI CACNNNNGTG 1 cut(s) 617
PagI TCATGA 1 cut(s) 352
PciI ACATGT 2 cut(s) 192, 834
PctI GAATGC 1 cut(s) 1192
PdmI GAANNNNTTC 2 cut(s) 434, 668
PfeI GAWTC 4 cut(s) 815, 1113, 1246, 1365
PflMI CCANNNNNTGG 2 cut(s) 665, 1283
PfoI TCCNGGA 2 cut(s) 222, 1276
PkrI GCNGC 5 cut(s) 147, 421, 745, 748, 1374
PleI GAGTC 2 cut(s) 569, 1252
PpsI GAGTC 2 cut(s) 569, 1252
Ppu21I YACGTR 1 cut(s) 1198
PscI ACATGT 2 cut(s) 192, 834
PsiI TTATAA 1 cut(s) 281
Psp6I CCWGG 4 cut(s) 510, 871, 1276, 1294
PspGI CCWGG 4 cut(s) 510, 871, 1276, 1294
PspN4I GGNNCC 2 cut(s) 526, 552
PspPI GGNCC 1 cut(s) 1292
PsuI RGATCY 1 cut(s) 550
RsaI GTAC 2 cut(s) 644, 833
RsaNI GTAC 2 cut(s) 643, 832
RseI CAYNNNNRTG 1 cut(s) 617
SalI GTCGAC 1 cut(s) 7
SaqAI TTAA 2 cut(s) 75, 609
SatI GCNGC 5 cut(s) 146, 420, 744, 747, 1373
Sau3AI GATC 5 cut(s) 33, 156, 324, 550, 854
Sau96I GGNCC 1 cut(s) 1292
SchI GAGTC 2 cut(s) 569, 1252
ScrFI CCNGG 5 cut(s) 224, 512, 873, 1278, 1296
SduI GDGCHC 1 cut(s) 1063
SfaNI GCATC 3 cut(s) 259, 641, 1046
SfuI TTCGAA 1 cut(s) 864
SinI GGWCC 1 cut(s) 1292
SmiMI CAYNNNNRTG 1 cut(s) 617
SmlI CTYRAG 2 cut(s) 1050, 1088
SmoI CTYRAG 2 cut(s) 1050, 1088
SnaBI TACGTA 1 cut(s) 1198
Sse9I AATT 6 cut(s) 70, 184, 312, 537, 605, 708
SsiI CCGC 2 cut(s) 146, 819
StyD4I CCNGG 5 cut(s) 222, 510, 871, 1276, 1294
StyI CCWWGG 2 cut(s) 105, 448
TaaI ACNGT 5 cut(s) 443, 691, 797, 952, 983
TaiI ACGT 3 cut(s) 471, 508, 1200
TaqI TCGA 8 cut(s) 8, 29, 88, 159, 639, 864, 937, 1360
TasI AATT 6 cut(s) 70, 184, 312, 537, 605, 708
TatI WGTACW 2 cut(s) 642, 831
TauI GCSGC 1 cut(s) 148
TfiI GAWTC 4 cut(s) 815, 1113, 1246, 1365
Tru1I TTAA 2 cut(s) 75, 609
Tru9I TTAA 2 cut(s) 75, 609
TscAI CASTG 5 cut(s) 417, 586, 619, 934, 1327
TseFI GTSAC 2 cut(s) 177, 1331
TseI GCWGC 4 cut(s) 419, 743, 746, 1372
Tsp45I GTSAC 2 cut(s) 177, 1331
TspDTI ATGAA 1 cut(s) 546
TspGWI ACGGA 1 cut(s) 196
TspRI CASTG 5 cut(s) 417, 586, 619, 934, 1327
Van91I CCANNNNNTGG 2 cut(s) 665, 1283
VpaK11BI GGWCC 1 cut(s) 1292
XapI RAATTY 2 cut(s) 70, 184
XceI RCATGY 3 cut(s) 196, 838, 1359
XcmI CCANNNNNNNNNTGG 2 cut(s) 518, 586
XmiI GTMKAC 1 cut(s) 8
XmnI GAANNNNTTC 2 cut(s) 434, 668
Zsp2I ATGCAT 1 cut(s) 1101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.