Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006887

Physical Location & Seq

Genomic Coordinates Reverse (-)

67361572 .. 67364617

Gene Structure 3046 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00276080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGACGAGAGCCACATGAATGCTAATCGCCGGCCCTTGCCTCGTCGTCTTTTCGATTCGAGAAGACGGAGCATTGCCCCCCGGATCTCCAATACGGTGTGCCGTTTCAGCTGTTTAAGATTTGTATTGTTGTATTGGCAGAGAGCACTTGCCATGTCCACCCTAGAGGGTTACAGTGGTTATGGACCTGAACAAGGTGAAAAGCCACTGAGAACTGCAATTGCTAGAACGTTTTATGATAACCTTGGCATAGAGGAAGATGATATATTTGTTTCTGATGGTGCAAAATGTGACATATGCCGCCTTCAGGTTCTTTTTGGGAAGGATAAAACAATAGCAGTGGAAGATCCATCATATCCGGCTTATGTAGACTCGAGTGTTATTATGGGCCAGACAGGACAGTACCAGAAATCTGTTGAGAAGTTCGCAAACATTGAGTACATGAGGTGTACTCCCGATAATGGATTTTTTCCTGATCTGTTCTCTACTAATCGAACAGATATCATATTTTTCTGTTCACCAAACAATCCTACTGGTTCTGCTGCAACAAGGGAGCAACTGACACAACTTGTAAAGTTTGCCAAGGATAATGGCTCAATCATAGTCTATGATTCTGCATATGCCATGTATATGTCGGATGATAATCCACGCTCCATCTTTGAAATCCCTGGAGCTAAAGATGTTGCAATTGAGACATCATCATTTAGCAAGTATGCTGGATTCACTGGAATTCGTTTGGGGTGGACTGTGGTTCCCAAGCAGTTGCACTATTCGGATGGTTTTCAAGTCGCCAAGGACTTCAACCGCATTGTTTGTACTTGCTTCAATGGTGCATCCACTATTGCCCAAGCTGGTGGTCTGGCTTGTCTTGAACCAGAGGGTCTTAAGGCTATGCACGGGGTGATAAATTTCTACAAAGAAAATACTAATATCATAATGGAGACATTTAACTCCCTTGGCTTTAATGTATATGGAGGGACGAATGCTCCATATGTGTGGGTCCACTTCCCCGGACAAAGCTCATGGGATGTGTTTGCTGAGATTCTTGAGAAGACTCATGTGGTTACCACACCTGGAAGTGGCTTTGGACCTGGTGGTGAAGGTTTCATCAGGATTAGTGCCTTTGGTCACAGGGAAAATGTATTAGAAGCATGCAAGAGATTCAAGCAATTATACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008483 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009627 GO:0009719 GO:0009725 GO:0009735 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010285 GO:0014070 GO:0016740 GO:0016769 GO:0023052 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046677 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0098542 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00300 ko01100 ko01110 ko01130 ko01230 map00300 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

393

Amino Acids

43.95

Weight (kDa)

6.61

Isoelectric Point (pI)

51.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	54 - 388	9.4e-38	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33680
fragaria_vesca	FvH4_2g02700 FvH4_2g02700
malus_domestica	MD00G1080600.v1.1 MD05G1111000.v1.1 MD10G1114500.v1.1
prunus_persica	Prupe.8G156000_v2.0.a1
pyrus_communis	pycom05g10690 pycom10g09890 pycom10g09900
rosa_chinensis	RchiOBHm_Chr6g0247121
rosa_laevigata	RLG00000015219 RLG00000030359 RLG00000030363
rosa_multiflora	Rmu_sc0004577.1_g000011 Rmu_sc0030830.1_g000004
rosa_roxburghii	Rroxscaffold_3G00276080 Rroxscaffold_7G00214330
rosa_rugosa	Rorug05G0522500 Rorug05G0522600
rosa_samantha	Rh6AG037800 Rh6BG032400 Rh6BG032700 Rh6CG033500 Rh6DG031200
rosa_wichuraiana	Rw6G003220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	369
AciI	CCGC	2 cut(s)	301, 805
AclI	AACGTT	1 cut(s)	230
AclWI	GGATC	2 cut(s)	92, 341
AcsI	RAATTY	2 cut(s)	729, 907
AcuI	CTGAAG	1 cut(s)	290
AdeI	CACNNNGTG	1 cut(s)	901
AfaI	GTAC	4 cut(s)	404, 440, 451, 817
AfiI	CCNNNNNNNGG	4 cut(s)	194, 307, 461, 1079
AflII	CTTAAG	1 cut(s)	884
AgsI	TTSAA	6 cut(s)	662, 785, 802, 826, 872, 1165
AjnI	CCWGG	3 cut(s)	667, 1072, 1090
AluBI	AGCT	4 cut(s)	111, 674, 851, 1020
AluI	AGCT	4 cut(s)	111, 674, 851, 1020
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	2 cut(s)	686, 935
AlwI	GGATC	2 cut(s)	92, 341
Ama87I	CYCGRG	1 cut(s)	373
AoxI	GGCC	2 cut(s)	32, 388
ApeKI	GCWGC	1 cut(s)	542
ApoI	RAATTY	2 cut(s)	729, 907
AspS9I	GGNCC	5 cut(s)	33, 185, 388, 1000, 1088
AsuC2I	CCSGG	2 cut(s)	82, 1011
AsuHPI	GGTGA	4 cut(s)	209, 510, 913, 1109
AvaI	CYCGRG	1 cut(s)	373
AvaII	GGWCC	3 cut(s)	185, 1000, 1088
BbsI	GAAGAC	2 cut(s)	70, 1058
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	1 cut(s)	529
BccI	CCATC	4 cut(s)	272, 358, 662, 770
BceAI	ACGGC	1 cut(s)	87
BciT130I	CCWGG	3 cut(s)	669, 1074, 1092
BcnI	CCSGG	2 cut(s)	82, 1011
BcoDI	GTCTC	2 cut(s)	686, 935
BfaI	CTAG	2 cut(s)	164, 225
BfrI	CTTAAG	1 cut(s)	884
BisI	GCNGC	2 cut(s)	301, 543
BlsI	GCNGC	2 cut(s)	302, 544
Bme1390I	CCNGG	5 cut(s)	82, 669, 1011, 1074, 1092
Bme18I	GGWCC	3 cut(s)	185, 1000, 1088
BmeT110I	CYCGRG	1 cut(s)	373
BmgT120I	GGNCC	5 cut(s)	33, 185, 388, 1000, 1088
BmiI	GGNNCC	2 cut(s)	753, 1001
BmrFI	CCNGG	5 cut(s)	82, 669, 1011, 1074, 1092
BmsI	GCATC	1 cut(s)	842
BpiI	GAAGAC	2 cut(s)	70, 1058
BplI	GAGNNNNNCTC	2 cut(s)	436, 468
BpmI	CTGGAG	1 cut(s)	690
BpuEI	CTTGAG	1 cut(s)	1067
BpuMI	CCSGG	2 cut(s)	82, 1011
BsaBI	GATNNNNATC	1 cut(s)	642
BsaJI	CCNNGG	7 cut(s)	80, 244, 582, 667, 792, 955, 1009
BsaXI	ACNNNNNCTCC	2 cut(s)	970, 1000
Bsc4I	CCNNNNNNNGG	4 cut(s)	194, 307, 461, 1079
Bse118I	RCCGGY	1 cut(s)	30
Bse1I	ACTGG	2 cut(s)	538, 730
Bse3DI	GCAATG	1 cut(s)	72
Bse8I	GATNNNNATC	1 cut(s)	642
BseBI	CCWGG	3 cut(s)	669, 1074, 1092
BseDI	CCNNGG	7 cut(s)	80, 244, 582, 667, 792, 955, 1009
BseGI	GGATG	4 cut(s)	643, 781, 833, 1033
BseJI	GATNNNNATC	1 cut(s)	642
BseLI	CCNNNNNNNGG	4 cut(s)	194, 307, 461, 1079
BseMI	GCAATG	1 cut(s)	72
BseMII	CTCAG	2 cut(s)	200, 1029
BseNI	ACTGG	2 cut(s)	538, 730
BseXI	GCAGC	1 cut(s)	529
BshFI	GGCC	2 cut(s)	34, 390
BsiHKAI	GWGCWC	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	373
BsiSI	CCGG	4 cut(s)	31, 82, 359, 1011
BslFI	GGGAC	1 cut(s)	991
BslI	CCNNNNNNNGG	4 cut(s)	194, 307, 461, 1079
BsmAI	GTCTC	2 cut(s)	686, 935
BsmFI	GGGAC	1 cut(s)	991
BsmI	GAATGC	2 cut(s)	25, 988
BsnI	GGCC	2 cut(s)	34, 390
BsoBI	CYCGRG	1 cut(s)	373
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	3 cut(s)	84, 346, 475
BspACI	CCGC	2 cut(s)	301, 805
BspANI	GGCC	2 cut(s)	34, 390
BspCNI	CTCAG	2 cut(s)	201, 1030
BspLI	GGNNCC	2 cut(s)	753, 1001
BspPI	GGATC	2 cut(s)	92, 341
BspTI	CTTAAG	1 cut(s)	884
BsrDI	GCAATG	1 cut(s)	72
BsrFI	RCCGGY	1 cut(s)	30
BsrI	ACTGG	2 cut(s)	538, 730
BssAI	RCCGGY	1 cut(s)	30
BssECI	CCNNGG	7 cut(s)	80, 244, 582, 667, 792, 955, 1009
BssMI	GATC	3 cut(s)	84, 346, 475
BssT1I	CCWWGG	4 cut(s)	244, 582, 792, 955
Bst2UI	CCWGG	3 cut(s)	669, 1074, 1092
Bst4CI	ACNGT	4 cut(s)	97, 176, 402, 748
BstAFI	CTTAAG	1 cut(s)	884
BstC8I	GCNNGC	2 cut(s)	32, 1153
BstDEI	CTNAG	2 cut(s)	209, 1038
BstEII	GGTNACC	1 cut(s)	1063
BstENI	CCTNNNNNAGG	1 cut(s)	192
BstF5I	GGATG	4 cut(s)	643, 781, 833, 1033
BstKTI	GATC	3 cut(s)	87, 349, 478
BstMAI	GTCTC	2 cut(s)	686, 935
BstMBI	GATC	3 cut(s)	84, 346, 475
BstMWI	GCNNNNNNNGC	1 cut(s)	108
BstNI	CCWGG	3 cut(s)	669, 1074, 1092
BstNSI	RCATGY	1 cut(s)	1155
BstPI	GGTNACC	1 cut(s)	1063
BstSCI	CCNGG	5 cut(s)	80, 667, 1009, 1072, 1090
BstV1I	GCAGC	1 cut(s)	529
BstV2I	GAAGAC	2 cut(s)	70, 1058
BstX2I	RGATCY	2 cut(s)	84, 346
BstXI	CCANNNNNNTGG	2 cut(s)	854, 996
BstYI	RGATCY	2 cut(s)	84, 346
BsuRI	GGCC	2 cut(s)	34, 390
BtsCI	GGATG	4 cut(s)	643, 781, 833, 1033
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	4 cut(s)	181, 206, 345, 723
Cac8I	GCNNGC	2 cut(s)	32, 1153
Cfr10I	RCCGGY	1 cut(s)	30
Cfr13I	GGNCC	5 cut(s)	33, 185, 388, 1000, 1088
CsiI	ACCWGGT	1 cut(s)	1090
Csp6I	GTAC	4 cut(s)	403, 439, 450, 816
CspCI	CAANNNNNGTGG	2 cut(s)	321, 356
CviAII	CATG	7 cut(s)	16, 154, 442, 625, 1023, 1058, 1152
CviQI	GTAC	4 cut(s)	403, 439, 450, 816
DdeI	CTNAG	2 cut(s)	209, 1038
DpnI	GATC	3 cut(s)	86, 348, 477
DpnII	GATC	3 cut(s)	84, 346, 475
DraIII	CACNNNGTG	1 cut(s)	901
Eco130I	CCWWGG	4 cut(s)	244, 582, 792, 955
Eco32I	GATATC	1 cut(s)	502
Eco47I	GGWCC	3 cut(s)	185, 1000, 1088
Eco57I	CTGAAG	1 cut(s)	290
Eco88I	CYCGRG	1 cut(s)	373
Eco91I	GGTNACC	1 cut(s)	1063
EcoNI	CCTNNNNNAGG	1 cut(s)	192
EcoO65I	GGTNACC	1 cut(s)	1063
EcoRI	GAATTC	1 cut(s)	729
EcoRII	CCWGG	3 cut(s)	667, 1072, 1090
EcoRV	GATATC	1 cut(s)	502
EcoT14I	CCWWGG	4 cut(s)	244, 582, 792, 955
ErhI	CCWWGG	4 cut(s)	244, 582, 792, 955
FaeI	CATG	7 cut(s)	19, 157, 445, 628, 1026, 1061, 1155
FaqI	GGGAC	1 cut(s)	991
FatI	CATG	7 cut(s)	15, 153, 441, 624, 1022, 1057, 1151
FauNDI	CATATG	3 cut(s)	296, 619, 991
FblI	GTMKAC	1 cut(s)	369
Fnu4HI	GCNGC	2 cut(s)	301, 543
FokI	GGATG	4 cut(s)	650, 788, 820, 1040
Fsp4HI	GCNGC	2 cut(s)	301, 543
FspBI	CTAG	2 cut(s)	164, 225
GluI	GCNGC	2 cut(s)	301, 543
GsuI	CTGGAG	1 cut(s)	690
HaeIII	GGCC	2 cut(s)	34, 390
HapII	CCGG	4 cut(s)	31, 82, 359, 1011
Hin1II	CATG	7 cut(s)	19, 157, 445, 628, 1026, 1061, 1155
HinfI	GANTC	7 cut(s)	56, 371, 611, 720, 1042, 1054, 1161
HpaII	CCGG	4 cut(s)	31, 82, 359, 1011
HphI	GGTGA	4 cut(s)	209, 510, 913, 1109
Hpy166II	GTNNAC	6 cut(s)	159, 370, 450, 518, 744, 1003
Hpy188I	TCNGA	3 cut(s)	277, 637, 775
Hpy188III	TCNNGA	6 cut(s)	60, 455, 473, 869, 1046, 1111
Hpy8I	GTNNAC	6 cut(s)	159, 370, 450, 518, 744, 1003
Hpy99I	CGWCG	1 cut(s)	48
HpyAV	CCTTC	3 cut(s)	314, 316, 1094
HpyCH4III	ACNGT	4 cut(s)	97, 176, 402, 748
HpyCH4IV	ACGT	1 cut(s)	230
HpyCH4V	TGCA	9 cut(s)	218, 284, 545, 617, 686, 766, 833, 895, 1155
HpyF10VI	GCNNNNNNNGC	1 cut(s)	108
HpyF3I	CTNAG	2 cut(s)	209, 1038
HpySE526I	ACGT	1 cut(s)	230
Hsp92II	CATG	7 cut(s)	19, 157, 445, 628, 1026, 1061, 1155
KroI	GCCGGC	1 cut(s)	30
KroNI	GCCGGC	1 cut(s)	32
Kzo9I	GATC	3 cut(s)	84, 346, 475
LmnI	GCTCC	5 cut(s)	69, 553, 656, 671, 991
Lsp1109I	GCAGC	1 cut(s)	529
LweI	GCATC	1 cut(s)	842
MabI	ACCWGGT	1 cut(s)	1090
MaeI	CTAG	2 cut(s)	164, 225
MaeII	ACGT	1 cut(s)	230
MaeIII	GTNAC	4 cut(s)	170, 290, 1063, 1127
MalI	GATC	3 cut(s)	86, 348, 477
MboI	GATC	3 cut(s)	84, 346, 475
MboII	GAAGA	4 cut(s)	75, 269, 356, 1063
MfeI	CAATTG	2 cut(s)	219, 687
MflI	RGATCY	2 cut(s)	84, 346
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	5 cut(s)	219, 687, 729, 907, 1169
MlyI	GAGTC	2 cut(s)	365, 1048
MmeI	TCCRAC	1 cut(s)	615
MnlI	CCTC	6 cut(s)	51, 160, 247, 438, 871, 968
MroNI	GCCGGC	1 cut(s)	30
MseI	TTAA	4 cut(s)	116, 885, 948, 963
MslI	CAYNNNNRTG	3 cut(s)	18, 629, 994
MspA1I	CMGCKG	1 cut(s)	111
MspCI	CTTAAG	1 cut(s)	884
MspI	CCGG	4 cut(s)	31, 82, 359, 1011
MspR9I	CCNGG	5 cut(s)	82, 669, 1011, 1074, 1092
MunI	CAATTG	2 cut(s)	219, 687
Mva1269I	GAATGC	2 cut(s)	25, 988
MvaI	CCWGG	3 cut(s)	669, 1074, 1092
MwoI	GCNNNNNNNGC	1 cut(s)	108
NaeI	GCCGGC	1 cut(s)	32
NciI	CCSGG	2 cut(s)	82, 1011
NdeI	CATATG	3 cut(s)	296, 619, 991
NdeII	GATC	3 cut(s)	84, 346, 475
NgoMIV	GCCGGC	1 cut(s)	30
NlaIII	CATG	7 cut(s)	19, 157, 445, 628, 1026, 1061, 1155
NlaIV	GGNNCC	2 cut(s)	753, 1001
NmuCI	GTSAC	2 cut(s)	290, 1127
NspI	RCATGY	1 cut(s)	1155
PaeI	GCATGC	1 cut(s)	1155
PaeR7I	CTCGAG	1 cut(s)	373
PctI	GAATGC	2 cut(s)	25, 988
PdiI	GCCGGC	1 cut(s)	32
PfeI	GAWTC	5 cut(s)	56, 611, 720, 1042, 1161
PkrI	GCNGC	2 cut(s)	302, 544
PleI	GAGTC	2 cut(s)	365, 1048
PpsI	GAGTC	2 cut(s)	365, 1048
Psp1406I	AACGTT	1 cut(s)	230
Psp6I	CCWGG	3 cut(s)	667, 1072, 1090
PspEI	GGTNACC	1 cut(s)	1063
PspGI	CCWGG	3 cut(s)	667, 1072, 1090
PspN4I	GGNNCC	2 cut(s)	753, 1001
PspPI	GGNCC	5 cut(s)	33, 185, 388, 1000, 1088
PspXI	VCTCGAGB	1 cut(s)	373
PsuI	RGATCY	2 cut(s)	84, 346
PvuII	CAGCTG	1 cut(s)	111
RsaI	GTAC	4 cut(s)	404, 440, 451, 817
RsaNI	GTAC	4 cut(s)	403, 439, 450, 816
RseI	CAYNNNNRTG	3 cut(s)	18, 629, 994
SaqAI	TTAA	4 cut(s)	116, 885, 948, 963
SatI	GCNGC	2 cut(s)	301, 543
Sau3AI	GATC	3 cut(s)	84, 346, 475
Sau96I	GGNCC	5 cut(s)	33, 185, 388, 1000, 1088
SchI	GAGTC	2 cut(s)	365, 1048
ScrFI	CCNGG	5 cut(s)	82, 669, 1011, 1074, 1092
SduI	GDGCHC	1 cut(s)	148
SexAI	ACCWGGT	1 cut(s)	1090
SfaNI	GCATC	1 cut(s)	842
Sfr274I	CTCGAG	1 cut(s)	373
SinI	GGWCC	3 cut(s)	185, 1000, 1088
SlaI	CTCGAG	1 cut(s)	373
SmiMI	CAYNNNNRTG	3 cut(s)	18, 629, 994
SmlI	CTYRAG	3 cut(s)	373, 884, 1046
SmoI	CTYRAG	3 cut(s)	373, 884, 1046
SphI	GCATGC	1 cut(s)	1155
Sse9I	AATT	5 cut(s)	219, 687, 729, 907, 1169
SsiI	CCGC	2 cut(s)	301, 805
SspMI	CTAG	2 cut(s)	164, 225
StyD4I	CCNGG	5 cut(s)	80, 667, 1009, 1072, 1090
StyI	CCWWGG	4 cut(s)	244, 582, 792, 955
TaaI	ACNGT	4 cut(s)	97, 176, 402, 748
TaiI	ACGT	1 cut(s)	233
TaqI	TCGA	4 cut(s)	54, 59, 374, 493
TasI	AATT	5 cut(s)	219, 687, 729, 907, 1169
TatI	WGTACW	3 cut(s)	438, 449, 815
TauI	GCSGC	1 cut(s)	303
TfiI	GAWTC	5 cut(s)	56, 611, 720, 1042, 1161
Tru1I	TTAA	4 cut(s)	116, 885, 948, 963
Tru9I	TTAA	4 cut(s)	116, 885, 948, 963
TscAI	CASTG	4 cut(s)	181, 213, 345, 730
TseFI	GTSAC	2 cut(s)	290, 1127
TseI	GCWGC	1 cut(s)	542
Tsp45I	GTSAC	2 cut(s)	290, 1127
TspDTI	ATGAA	2 cut(s)	32, 1096
TspGWI	ACGGA	1 cut(s)	82
TspRI	CASTG	4 cut(s)	181, 213, 345, 730
Vha464I	CTTAAG	1 cut(s)	884
VpaK11BI	GGWCC	3 cut(s)	185, 1000, 1088
XagI	CCTNNNNNAGG	1 cut(s)	192
XapI	RAATTY	2 cut(s)	729, 907
XceI	RCATGY	1 cut(s)	1155
XhoI	CTCGAG	1 cut(s)	373
XmiI	GTMKAC	1 cut(s)	369
XspI	CTAG	2 cut(s)	164, 225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.