Prupe.8G156000_v2.0.a1

LL-diaminopimelate aminotransferase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
16704906 .. 16709354
4449 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G156000.1

Sequence Viewer

Length: 1389 bp
ATGTCTTCTTCTTCTCTGTTACAGGCTTCAATCTCTTCGTCTTCATCTGCTTTCTTCGCCAACACCAAAATCAACTTCAACAACAGAGCTCAGAATGTCTCTCTTCCAGCAAAACCCGTGGGCGTCTGTACATGCGTCGCCACTCCACAAGCAGAGAAGACAGCGTTCAAGACCCAGGTGTCTCGCAATGTCAATATAGCCAAACTTCAAGCTGGGTATCTCTTTCCAGAGATTGCTAGAAGAAGGGCTGCACACTTGCAAAAGTACCCTGATGCACAAGTGATTAGCCTTGGGATTGGTGACACTACTGAGCCCATTCCAGAAGTTATAACCTCTGCAATGGCAAAGAGATCACATGCGTTGTCTACCCTAGAGGGTTACAGTGGTTACGGAGCTGAACAAGGTGAAAAGCCACTGAGAGCTGCAATTGCTTCGACCTTTTATGACAACCTTGACATAGAGGAAGATGACATCTTTGTTTCTGATGGTGCAAAATGTGACATATCCCGCCTTCAGGTTGTTTTTGGGTCTAATGTTACAATGGCAGTTCAAGATCCATCTTATCCGGCTTATGTAGATTCAAGTGTTATTATGGGCCAAACTGGAGAGTATCAGAAAGCTGTGGAAAAGTTCGGAAATATTGAGTACATGAGGTGTACTCCTGAGAATGGATTTTTCCCTGATTTACGCACTGTTTCTCGAACAGATATCATATTTTTCTGCTCACCAAACAACCCTACTGGTTCTGCTGCAACGAGGGAGCAGCTGACACAACTGGTGCAGTTTGCAAAAGATAATGGGTCAATCATAGTCTATGATTCTGCATATGCCATGTATATGTCAGATGACAATCCACGCTCAATCTTTGAAATCCCTGGAGCCAAAGAGGTTGCAATTGAGACATCATCATTCAGTAAGTATGCTGGATTCACCGGAGTTCGTTTGGGGTGGACTGTTGTCCCAAAGCAGTTGCTCTTTTCAGATGGATTTCCTGTTGCCAAGGACTTCAACCGCATCGTTTGTACTTGCTTTAATGGTGCATCAAATATTTCCCAAGCTGGTGGTCTTGCTTGCCTTTCACCAGAAGGTCTTAAGGCAATGCATGAGGTGATCGGCTTCTACAAAGAAAATACTAATATAATAGTGGAGACATTTGAGTCTCTAGGCTTTAAGGTTTATGGAGGGAAGAATGCACCATATGTGTGGGTCCACTTCCCTGGCCGAAGCTCATGGGATGTATTCAGTGAGATTCTTGAGAAGACTCATGTGGTTACCACACCTGGGAGTGGTTTTGGACCTGGTGGTGAAGGTTTCGTCAGGGTTAGCGCCTTTGGTCACAGGAGTAATGTATTAGAAGCCTGTAAAAGATTCAAGCAATTGTACAAGTGA

Protein Analysis

463

Amino Acids

50.33

Weight (kDa)

6.35

Isoelectric Point (pI)

54.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 329
AasI GACNNNNNNGTC 2 cut(s) 178, 1156
AccI GTMKAC 1 cut(s) 365
AciI CCGC 2 cut(s) 508, 1012
AclWI GGATC 1 cut(s) 548
AcoI YGGCCR 1 cut(s) 1219
AcuI CTGAAG 1 cut(s) 497
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 6 cut(s) 130, 266, 647, 658, 1024, 1382
AfiI CCNNNNNNNGG 4 cut(s) 514, 668, 1281, 1286
AflII CTTAAG 1 cut(s) 1091
AgsI TTSAA 9 cut(s) 30, 79, 169, 209, 551, 582, 869, 1009, 1372
AjnI CCWGG 5 cut(s) 174, 874, 1216, 1279, 1297
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 8 cut(s) 89, 212, 395, 422, 620, 766, 1058, 1227
AluI AGCT 8 cut(s) 89, 212, 395, 422, 620, 766, 1058, 1227
Alw21I GWGCWC 1 cut(s) 91
Alw26I GTCTC 5 cut(s) 103, 186, 893, 1142, 1164
AlwI GGATC 1 cut(s) 548
AoxI GGCC 2 cut(s) 595, 1219
ApeKI GCWGC 4 cut(s) 248, 422, 749, 763
AspLEI GCGC 1 cut(s) 1328
AspS9I GGNCC 3 cut(s) 595, 1207, 1295
AsuHPI GGTGA 7 cut(s) 311, 416, 717, 922, 1071, 1120, 1316
AvaII GGWCC 2 cut(s) 1207, 1295
BanII GRGCYC 2 cut(s) 91, 315
BbsI GAAGAC 3 cut(s) 33, 164, 1265
Bbv12I GWGCWC 1 cut(s) 91
BbvI GCAGC 4 cut(s) 235, 409, 736, 775
BccI CCATC 3 cut(s) 479, 565, 977
BcgI CGANNNNNNTGC 2 cut(s) 414, 448
BciT130I CCWGG 5 cut(s) 176, 876, 1218, 1281, 1299
BcoDI GTCTC 5 cut(s) 103, 186, 893, 1142, 1164
BfaI CTAG 3 cut(s) 237, 371, 1163
BfoI RGCGCY 1 cut(s) 1329
BfrI CTTAAG 1 cut(s) 1091
BisI GCNGC 4 cut(s) 249, 423, 750, 764
BlsI GCNGC 4 cut(s) 250, 424, 751, 765
Bme1390I CCNGG 5 cut(s) 176, 876, 1218, 1281, 1299
Bme18I GGWCC 2 cut(s) 1207, 1295
BmgT120I GGNCC 3 cut(s) 595, 1207, 1295
BmiI GGNNCC 2 cut(s) 880, 1208
BmrFI CCNGG 5 cut(s) 176, 876, 1218, 1281, 1299
BmsI GCATC 3 cut(s) 262, 1023, 1049
BoxI GACNNNNGTC 1 cut(s) 956
BpiI GAAGAC 3 cut(s) 33, 164, 1265
BplI GAGNNNNNCTC 2 cut(s) 643, 675
BpmI CTGGAG 2 cut(s) 624, 897
BpuEI CTTGAG 1 cut(s) 1274
BsaBI GATNNNNATC 1 cut(s) 849
BsaHI GRCGYC 1 cut(s) 123
BsaJI CCNNGG 7 cut(s) 117, 174, 289, 874, 999, 1216, 1280
BsaWI WCCGGW 1 cut(s) 932
Bsc4I CCNNNNNNNGG 4 cut(s) 514, 668, 1281, 1286
Bse1I ACTGG 3 cut(s) 607, 745, 780
Bse3DI GCAATG 3 cut(s) 193, 345, 1104
Bse8I GATNNNNATC 1 cut(s) 849
BseBI CCWGG 5 cut(s) 176, 876, 1218, 1281, 1299
BseDI CCNNGG 7 cut(s) 117, 174, 289, 874, 999, 1216, 1280
BseGI GGATG 1 cut(s) 1240
BseJI GATNNNNATC 1 cut(s) 849
BseLI CCNNNNNNNGG 4 cut(s) 514, 668, 1281, 1286
BseMI GCAATG 3 cut(s) 193, 345, 1104
BseMII CTCAG 4 cut(s) 104, 300, 407, 654
BseNI ACTGG 3 cut(s) 607, 745, 780
BseXI GCAGC 4 cut(s) 235, 409, 736, 775
BseYI CCCAGC 1 cut(s) 212
BsgI GTGCAG 2 cut(s) 234, 800
BshFI GGCC 2 cut(s) 597, 1221
BsiHKAI GWGCWC 1 cut(s) 91
BsiSI CCGG 2 cut(s) 566, 933
BslFI GGGAC 1 cut(s) 944
BslI CCNNNNNNNGG 4 cut(s) 514, 668, 1281, 1286
BsmAI GTCTC 5 cut(s) 103, 186, 893, 1142, 1164
BsmFI GGGAC 1 cut(s) 944
BsmI GAATGC 1 cut(s) 1195
BsnI GGCC 2 cut(s) 597, 1221
Bsp1286I GDGCHC 2 cut(s) 91, 315
Bsp1407I TGTACA 2 cut(s) 128, 1380
Bsp143I GATC 3 cut(s) 350, 553, 1110
BspACI CCGC 2 cut(s) 508, 1012
BspANI GGCC 2 cut(s) 597, 1221
BspCNI CTCAG 4 cut(s) 103, 301, 408, 655
BspLI GGNNCC 2 cut(s) 880, 1208
BspPI GGATC 1 cut(s) 548
BspTI CTTAAG 1 cut(s) 1091
BsrDI GCAATG 3 cut(s) 193, 345, 1104
BsrGI TGTACA 2 cut(s) 128, 1380
BsrI ACTGG 3 cut(s) 607, 745, 780
BssECI CCNNGG 7 cut(s) 117, 174, 289, 874, 999, 1216, 1280
BssMI GATC 3 cut(s) 350, 553, 1110
BssNI GRCGYC 1 cut(s) 123
BssT1I CCWWGG 2 cut(s) 289, 999
Bst2UI CCWGG 5 cut(s) 176, 876, 1218, 1281, 1299
Bst4CI ACNGT 3 cut(s) 383, 694, 955
Bst6I CTCTTC 2 cut(s) 40, 108
BstACI GRCGYC 1 cut(s) 123
BstAFI CTTAAG 1 cut(s) 1091
BstAUI TGTACA 2 cut(s) 128, 1380
BstC8I GCNNGC 1 cut(s) 1072
BstDEI CTNAG 4 cut(s) 90, 309, 416, 663
BstDSI CCRYGG 1 cut(s) 117
BstEII GGTNACC 1 cut(s) 1270
BstF5I GGATG 1 cut(s) 1240
BstH2I RGCGCY 1 cut(s) 1329
BstHHI GCGC 1 cut(s) 1328
BstKTI GATC 3 cut(s) 353, 556, 1113
BstMAI GTCTC 5 cut(s) 103, 186, 893, 1142, 1164
BstMBI GATC 3 cut(s) 350, 553, 1110
BstMWI GCNNNNNNNGC 2 cut(s) 56, 428
BstNI CCWGG 5 cut(s) 176, 876, 1218, 1281, 1299
BstNSI RCATGY 2 cut(s) 135, 359
BstPAI GACNNNNGTC 1 cut(s) 956
BstPI GGTNACC 1 cut(s) 1270
BstSCI CCNGG 5 cut(s) 174, 874, 1216, 1279, 1297
BstV1I GCAGC 4 cut(s) 235, 409, 736, 775
BstV2I GAAGAC 3 cut(s) 33, 164, 1265
BstX2I RGATCY 1 cut(s) 553
BstXI CCANNNNNNTGG 3 cut(s) 1061, 1203, 1217
BstYI RGATCY 1 cut(s) 553
BsuRI GGCC 2 cut(s) 597, 1221
BtgI CCRYGG 1 cut(s) 117
BtsCI GGATG 1 cut(s) 1240
BtsIMutI CAGTG 4 cut(s) 388, 413, 690, 1249
Cac8I GCNNGC 1 cut(s) 1072
CfoI GCGC 1 cut(s) 1328
Cfr13I GGNCC 3 cut(s) 595, 1207, 1295
CseI GACGC 2 cut(s) 112, 124
CsiI ACCWGGT 1 cut(s) 1297
Csp6I GTAC 6 cut(s) 129, 265, 646, 657, 1023, 1381
CspCI CAANNNNNGTGG 2 cut(s) 99, 134
CviAII CATG 7 cut(s) 132, 356, 649, 832, 1103, 1230, 1265
CviQI GTAC 6 cut(s) 129, 265, 646, 657, 1023, 1381
DdeI CTNAG 4 cut(s) 90, 309, 416, 663
DpnI GATC 3 cut(s) 352, 555, 1112
DpnII GATC 3 cut(s) 350, 553, 1110
DrdI GACNNNNNNGTC 2 cut(s) 178, 1156
DseDI GACNNNNNNGTC 2 cut(s) 178, 1156
EaeI YGGCCR 1 cut(s) 1219
Eam1104I CTCTTC 2 cut(s) 40, 108
EarI CTCTTC 2 cut(s) 40, 108
Ecl136II GAGCTC 1 cut(s) 89
Eco130I CCWWGG 2 cut(s) 289, 999
Eco24I GRGCYC 2 cut(s) 91, 315
Eco32I GATATC 1 cut(s) 709
Eco47I GGWCC 2 cut(s) 1207, 1295
Eco53kI GAGCTC 1 cut(s) 89
Eco57I CTGAAG 1 cut(s) 497
Eco91I GGTNACC 1 cut(s) 1270
EcoICRI GAGCTC 1 cut(s) 89
EcoO65I GGTNACC 1 cut(s) 1270
EcoRII CCWGG 5 cut(s) 174, 874, 1216, 1279, 1297
EcoRV GATATC 1 cut(s) 709
EcoT14I CCWWGG 2 cut(s) 289, 999
EcoT22I ATGCAT 1 cut(s) 1104
EcoT38I GRGCYC 2 cut(s) 91, 315
ErhI CCWWGG 2 cut(s) 289, 999
FaeI CATG 7 cut(s) 135, 359, 652, 835, 1106, 1233, 1268
FaqI GGGAC 1 cut(s) 944
FatI CATG 7 cut(s) 131, 355, 648, 831, 1102, 1229, 1264
FauI CCCGC 1 cut(s) 515
FauNDI CATATG 2 cut(s) 826, 1198
FblI GTMKAC 1 cut(s) 365
Fnu4HI GCNGC 4 cut(s) 249, 423, 750, 764
FokI GGATG 1 cut(s) 1247
FriOI GRGCYC 2 cut(s) 91, 315
Fsp4HI GCNGC 4 cut(s) 249, 423, 750, 764
FspBI CTAG 3 cut(s) 237, 371, 1163
GlaI GCGC 1 cut(s) 1327
GluI GCNGC 4 cut(s) 249, 423, 750, 764
GsaI CCCAGC 1 cut(s) 216
GsuI CTGGAG 2 cut(s) 624, 897
HaeII RGCGCY 1 cut(s) 1329
HaeIII GGCC 2 cut(s) 597, 1221
HapII CCGG 2 cut(s) 566, 933
HgaI GACGC 2 cut(s) 112, 124
HhaI GCGC 1 cut(s) 1328
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 7 cut(s) 135, 359, 652, 835, 1106, 1233, 1268
Hin6I GCGC 1 cut(s) 1326
HinP1I GCGC 1 cut(s) 1326
HinfI GANTC 7 cut(s) 578, 818, 927, 1157, 1249, 1261, 1368
HpaII CCGG 2 cut(s) 566, 933
HphI GGTGA 7 cut(s) 311, 416, 717, 922, 1071, 1120, 1316
Hpy166II GTNNAC 4 cut(s) 366, 657, 951, 1210
Hpy188I TCNGA 6 cut(s) 93, 484, 615, 635, 844, 982
Hpy188III TCNNGA 7 cut(s) 169, 227, 320, 551, 662, 699, 1253
Hpy8I GTNNAC 4 cut(s) 366, 657, 951, 1210
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 4 cut(s) 237, 521, 1079, 1301
HpyCH4III ACNGT 3 cut(s) 383, 694, 955
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 428
HpyF3I CTNAG 4 cut(s) 90, 309, 416, 663
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 7 cut(s) 135, 359, 652, 835, 1106, 1233, 1268
HspAI GCGC 1 cut(s) 1326
Kzo9I GATC 3 cut(s) 350, 553, 1110
LmnI GCTCC 3 cut(s) 392, 760, 878
Lsp1109I GCAGC 4 cut(s) 235, 409, 736, 775
LweI GCATC 3 cut(s) 262, 1023, 1049
MabI ACCWGGT 1 cut(s) 1297
MaeI CTAG 3 cut(s) 237, 371, 1163
MaeIII GTNAC 8 cut(s) 18, 299, 377, 386, 497, 535, 1270, 1334
MalI GATC 3 cut(s) 352, 555, 1112
MboI GATC 3 cut(s) 350, 553, 1110
MfeI CAATTG 3 cut(s) 426, 894, 1376
MflI RGATCY 1 cut(s) 553
MhlI GDGCHC 2 cut(s) 91, 315
MluCI AATT 3 cut(s) 426, 894, 1376
MlyI GAGTC 2 cut(s) 1166, 1255
MnlI CCTC 8 cut(s) 343, 367, 454, 645, 750, 880, 1099, 1175
Mph1103I ATGCAT 1 cut(s) 1104
MseI TTAA 3 cut(s) 1032, 1092, 1170
MslI CAYNNNNRTG 2 cut(s) 836, 1201
MspA1I CMGCKG 1 cut(s) 766
MspCI CTTAAG 1 cut(s) 1091
MspI CCGG 2 cut(s) 566, 933
MspR9I CCNGG 5 cut(s) 176, 876, 1218, 1281, 1299
MunI CAATTG 3 cut(s) 426, 894, 1376
Mva1269I GAATGC 1 cut(s) 1195
MvaI CCWGG 5 cut(s) 176, 876, 1218, 1281, 1299
MwoI GCNNNNNNNGC 2 cut(s) 56, 428
NdeI CATATG 2 cut(s) 826, 1198
NdeII GATC 3 cut(s) 350, 553, 1110
NlaIII CATG 7 cut(s) 135, 359, 652, 835, 1106, 1233, 1268
NlaIV GGNNCC 2 cut(s) 880, 1208
NmuCI GTSAC 3 cut(s) 299, 497, 1334
NsiI ATGCAT 1 cut(s) 1104
NspI RCATGY 2 cut(s) 135, 359
PctI GAATGC 1 cut(s) 1195
PfeI GAWTC 5 cut(s) 578, 818, 927, 1249, 1368
PkrI GCNGC 4 cut(s) 250, 424, 751, 765
PleI GAGTC 2 cut(s) 1165, 1255
PpsI GAGTC 2 cut(s) 1165, 1255
PshAI GACNNNNGTC 1 cut(s) 956
PsiI TTATAA 1 cut(s) 329
Psp124BI GAGCTC 1 cut(s) 91
Psp6I CCWGG 5 cut(s) 174, 874, 1216, 1279, 1297
PspEI GGTNACC 1 cut(s) 1270
PspFI CCCAGC 1 cut(s) 212
PspGI CCWGG 5 cut(s) 174, 874, 1216, 1279, 1297
PspN4I GGNNCC 2 cut(s) 880, 1208
PspPI GGNCC 3 cut(s) 595, 1207, 1295
PsuI RGATCY 1 cut(s) 553
PvuII CAGCTG 1 cut(s) 766
RsaI GTAC 6 cut(s) 130, 266, 647, 658, 1024, 1382
RsaNI GTAC 6 cut(s) 129, 265, 646, 657, 1023, 1381
RseI CAYNNNNRTG 2 cut(s) 836, 1201
SacI GAGCTC 1 cut(s) 91
SaqAI TTAA 3 cut(s) 1032, 1092, 1170
SatI GCNGC 4 cut(s) 249, 423, 750, 764
Sau3AI GATC 3 cut(s) 350, 553, 1110
Sau96I GGNCC 3 cut(s) 595, 1207, 1295
SchI GAGTC 2 cut(s) 1166, 1255
ScrFI CCNGG 5 cut(s) 176, 876, 1218, 1281, 1299
SduI GDGCHC 2 cut(s) 91, 315
SexAI ACCWGGT 1 cut(s) 1297
SfaNI GCATC 3 cut(s) 262, 1023, 1049
SinI GGWCC 2 cut(s) 1207, 1295
SmiMI CAYNNNNRTG 2 cut(s) 836, 1201
SmlI CTYRAG 2 cut(s) 1091, 1253
SmoI CTYRAG 2 cut(s) 1091, 1253
Sse9I AATT 3 cut(s) 426, 894, 1376
SsiI CCGC 2 cut(s) 508, 1012
SspI AATATT 2 cut(s) 640, 1048
SspMI CTAG 3 cut(s) 237, 371, 1163
SstI GAGCTC 1 cut(s) 91
StyD4I CCNGG 5 cut(s) 174, 874, 1216, 1279, 1297
StyI CCWWGG 2 cut(s) 289, 999
TaaI ACNGT 3 cut(s) 383, 694, 955
TaqI TCGA 2 cut(s) 434, 700
TasI AATT 3 cut(s) 426, 894, 1376
TatI WGTACW 5 cut(s) 128, 645, 656, 1022, 1380
TfiI GAWTC 5 cut(s) 578, 818, 927, 1249, 1368
Tru1I TTAA 3 cut(s) 1032, 1092, 1170
Tru9I TTAA 3 cut(s) 1032, 1092, 1170
TscAI CASTG 4 cut(s) 388, 420, 697, 1249
TseFI GTSAC 3 cut(s) 299, 497, 1334
TseI GCWGC 4 cut(s) 248, 422, 749, 763
Tsp45I GTSAC 3 cut(s) 299, 497, 1334
TspDTI ATGAA 1 cut(s) 33
TspGWI ACGGA 1 cut(s) 405
TspRI CASTG 4 cut(s) 388, 420, 697, 1249
Vha464I CTTAAG 1 cut(s) 1091
VpaK11BI GGWCC 2 cut(s) 1207, 1295
XceI RCATGY 2 cut(s) 135, 359
XmiI GTMKAC 1 cut(s) 365
XspI CTAG 3 cut(s) 237, 371, 1163
Zsp2I ATGCAT 1 cut(s) 1104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.