pycom05g10690

LL-diaminopimelate aminotransferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
14134601 .. 14138204
3604 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g10690.5

Sequence Viewer

Length: 1311 bp
ATGTCTTCTTTTTCGCTGATGCAGACTTCGATCTCGTCGTCTTCCTCCGCTTTCTTCGCCAACCACAAATTCACATTCAATTCCAGAGCTAATAATGCATCGCTTCCAGCAAAACCCATCAGCATCTGCAAATGCGTCGCCACTCCGCAGGCAGAGAAGACCGAGTACAAGACCCAGGTGTCCCGGAATGGGAACATAGCCAAACTTCAAGCTGGGTATCTTTTTCCAGAGGTTGCTAGAAGAAGGGCTGCACACTTGCAAAAGTACCCTGATGCACAAGTGATTAGCCTTGGGATTGGTGACACTACTGAGCCCATTCCAGAAGTTATAACCTCTGCCATGGCTAAGAGGGCACATGCTTTGTCTACCCTAGAGGGTTACAGTGGTTATGGAGCTGAACAAGGTGAAAAGCCACTAAGAGCTGCAATTGCTTCAACATTTTATGACAACCTTGGCATAGAGGAAGATGACATCTTTGTTTCTGATGGCGCAAAATGTGACATATCCCGCCTTCAGGTTGTTTTTGGGTCTAATGTCACAATAGCAGTGCAAGATCCATCATATCCGGCTTATGTAGACTCAAGTGTTATTATGGGCCAGACTGGACAGTATCAGAAAGATGTTGAGAAGTTCGGAAATATTGAGTATATGAGGTGTACTCCTGAGAATGGATTCTTTCCTGATTTACGCACTGTTGCTCGAACAGATATCATATTTTTCTGCTCACCAAACAACCCGACTGGTTCTGCTGCAACAAGGGAGCAACTGACACAGCTGGTACAGTTTGCTAAGGATAATGGGTCAATCATAGTATACGATTCAGCATATGCCATGTATATGTCAGATGACAATCCACGCTCGATTTTTGAAATACCTGGAGCCAAAGAGGTTGCGCTTGAGACATCATCGTTCAGTAAGTATGCTGGATTCACAGGAGTTCGTCTGGGGTGGACTGTTGTTCCAAAGCAGTTGCTCTTTTCAGATGGATTCCCTGTCGCCAAGGACTTCAACCGCATCGTTTGTACTTGCTTCAATGGTGCATCCAATATATCCCAAGCTGGTGGTCTTGCTTGCCTTTCACCAGAAGGCCTTAAGGTGTACGGAGGGAAGAATGCACCCTATGTGTGGGTGCACTTCCCTGGCCGAAGCTCATGGGATGTATTCAGCGAGATTCTTGAGAAGACTCATGTGGTCACCACACCTGGGAGTGGTTTCGGATTTGGGGGTGAAGGTTTCGTCAGGGTTAGCGCATTTGGTCACCGGAAAAATGTATTAGAAGCTTGCAAAAGGTTCAAGCAATTATACAAGTGA

Protein Analysis

437

Amino Acids

47.56

Weight (kDa)

7.98

Isoelectric Point (pI)

49.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 329
AasI GACNNNNNNGTC 1 cut(s) 178
AccI GTMKAC 3 cut(s) 365, 576, 813
AciI CCGC 4 cut(s) 48, 146, 508, 1012
AclWI GGATC 1 cut(s) 548
AcoI YGGCCR 1 cut(s) 1141
AcsI RAATTY 1 cut(s) 68
AcuI CTGAAG 1 cut(s) 497
AfaI GTAC 6 cut(s) 167, 266, 658, 780, 1024, 1100
AfiI CCNNNNNNNGG 6 cut(s) 189, 514, 668, 1125, 1203, 1208
AflII CTTAAG 1 cut(s) 1091
AgsI TTSAA 7 cut(s) 79, 209, 435, 869, 1009, 1033, 1294
AjnI CCWGG 4 cut(s) 174, 874, 1138, 1201
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
AluBI AGCT 8 cut(s) 89, 212, 395, 422, 775, 1058, 1149, 1280
AluI AGCT 8 cut(s) 89, 212, 395, 422, 775, 1058, 1149, 1280
Alw21I GWGCWC 1 cut(s) 1134
Alw26I GTCTC 1 cut(s) 893
Alw44I GTGCAC 1 cut(s) 1130
AlwI GGATC 1 cut(s) 548
AlwNI CAGNNNCTG 1 cut(s) 126
AoxI GGCC 3 cut(s) 595, 1087, 1141
ApaLI GTGCAC 1 cut(s) 1130
ApeKI GCWGC 3 cut(s) 248, 422, 749
ApoI RAATTY 1 cut(s) 68
Asp700I GAANNNNTTC 1 cut(s) 671
AspLEI GCGC 3 cut(s) 491, 895, 1250
AspS9I GGNCC 1 cut(s) 595
AsuC2I CCSGG 1 cut(s) 184
AsuHPI GGTGA 7 cut(s) 311, 416, 717, 1071, 1186, 1238, 1250
BaeGI GKGCMC 2 cut(s) 355, 1134
BanII GRGCYC 1 cut(s) 315
BarI GAAGNNNNNNTAC 2 cut(s) 149, 181
BbsI GAAGAC 3 cut(s) 33, 164, 1187
Bbv12I GWGCWC 1 cut(s) 1134
BbvI GCAGC 3 cut(s) 235, 409, 736
BccI CCATC 4 cut(s) 125, 479, 565, 977
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BciT130I CCWGG 4 cut(s) 176, 876, 1140, 1203
BcnI CCSGG 1 cut(s) 184
BcoDI GTCTC 1 cut(s) 893
BfaI CTAG 2 cut(s) 237, 371
BfrI CTTAAG 1 cut(s) 1091
BisI GCNGC 3 cut(s) 249, 423, 750
BlsI GCNGC 3 cut(s) 250, 424, 751
Bme1390I CCNGG 5 cut(s) 176, 184, 876, 1140, 1203
BmgT120I GGNCC 1 cut(s) 595
BmiI GGNNCC 1 cut(s) 880
BmrFI CCNGG 5 cut(s) 176, 184, 876, 1140, 1203
BmsI GCATC 6 cut(s) 9, 107, 132, 262, 1023, 1049
BpiI GAAGAC 3 cut(s) 33, 164, 1187
BplI GAGNNNNNCTC 2 cut(s) 643, 675
BpmI CTGGAG 1 cut(s) 897
Bpu10I CCTNAGC 1 cut(s) 789
BpuEI CTTGAG 3 cut(s) 565, 917, 1196
BpuMI CCSGG 1 cut(s) 184
BsaBI GATNNNNATC 1 cut(s) 849
BsaJI CCNNGG 7 cut(s) 174, 289, 339, 451, 999, 1138, 1202
BsaWI WCCGGW 1 cut(s) 1260
Bsc4I CCNNNNNNNGG 6 cut(s) 189, 514, 668, 1125, 1203, 1208
Bse1I ACTGG 2 cut(s) 607, 745
Bse8I GATNNNNATC 1 cut(s) 849
BseBI CCWGG 4 cut(s) 176, 876, 1140, 1203
BseDI CCNNGG 7 cut(s) 174, 289, 339, 451, 999, 1138, 1202
BseGI GGATG 2 cut(s) 1040, 1162
BseJI GATNNNNATC 1 cut(s) 849
BseLI CCNNNNNNNGG 6 cut(s) 189, 514, 668, 1125, 1203, 1208
BseMII CTCAG 2 cut(s) 300, 654
BseNI ACTGG 2 cut(s) 607, 745
BseSI GKGCMC 2 cut(s) 355, 1134
BseXI GCAGC 3 cut(s) 235, 409, 736
BseYI CCCAGC 1 cut(s) 212
BsgI GTGCAG 1 cut(s) 234
BshFI GGCC 3 cut(s) 597, 1089, 1143
BsiHKAI GWGCWC 1 cut(s) 1134
BsiSI CCGG 3 cut(s) 184, 566, 1261
BslFI GGGAC 1 cut(s) 166
BslI CCNNNNNNNGG 6 cut(s) 189, 514, 668, 1125, 1203, 1208
BsmAI GTCTC 1 cut(s) 893
BsmFI GGGAC 1 cut(s) 166
BsmI GAATGC 1 cut(s) 1117
BsnI GGCC 3 cut(s) 597, 1089, 1143
Bsp1286I GDGCHC 3 cut(s) 315, 355, 1134
Bsp143I GATC 2 cut(s) 30, 553
Bsp19I CCATGG 1 cut(s) 339
BspACI CCGC 4 cut(s) 48, 146, 508, 1012
BspANI GGCC 3 cut(s) 597, 1089, 1143
BspCNI CTCAG 2 cut(s) 301, 655
BspLI GGNNCC 1 cut(s) 880
BspPI GGATC 1 cut(s) 548
BspTI CTTAAG 1 cut(s) 1091
BsrI ACTGG 2 cut(s) 607, 745
BssECI CCNNGG 7 cut(s) 174, 289, 339, 451, 999, 1138, 1202
BssMI GATC 2 cut(s) 30, 553
BssNAI GTATAC 1 cut(s) 814
BssT1I CCWWGG 4 cut(s) 289, 339, 451, 999
Bst1107I GTATAC 1 cut(s) 814
Bst2UI CCWGG 4 cut(s) 176, 876, 1140, 1203
Bst4CI ACNGT 5 cut(s) 383, 609, 694, 783, 955
BstAFI CTTAAG 1 cut(s) 1091
BstC8I GCNNGC 3 cut(s) 150, 1072, 1282
BstDEI CTNAG 5 cut(s) 309, 345, 416, 663, 789
BstDSI CCRYGG 1 cut(s) 339
BstEII GGTNACC 2 cut(s) 1192, 1256
BstF5I GGATG 2 cut(s) 1040, 1162
BstHHI GCGC 3 cut(s) 491, 895, 1250
BstKTI GATC 2 cut(s) 33, 556
BstMAI GTCTC 1 cut(s) 893
BstMBI GATC 2 cut(s) 30, 553
BstMWI GCNNNNNNNGC 4 cut(s) 56, 95, 350, 428
BstNI CCWGG 4 cut(s) 176, 876, 1140, 1203
BstNSI RCATGY 1 cut(s) 359
BstPI GGTNACC 2 cut(s) 1192, 1256
BstSCI CCNGG 5 cut(s) 174, 182, 874, 1138, 1201
BstSLI GKGCMC 2 cut(s) 355, 1134
BstV1I GCAGC 3 cut(s) 235, 409, 736
BstV2I GAAGAC 3 cut(s) 33, 164, 1187
BstX2I RGATCY 1 cut(s) 553
BstXI CCANNNNNNTGG 1 cut(s) 1061
BstYI RGATCY 1 cut(s) 553
BstZ17I GTATAC 1 cut(s) 814
BsuRI GGCC 3 cut(s) 597, 1089, 1143
BtgI CCRYGG 1 cut(s) 339
BtgZI GCGATG 1 cut(s) 84
BtsCI GGATG 2 cut(s) 1040, 1162
BtsI GCAGTG 1 cut(s) 552
BtsIMutI CAGTG 3 cut(s) 388, 552, 690
Cac8I GCNNGC 3 cut(s) 150, 1072, 1282
CaiI CAGNNNCTG 1 cut(s) 126
CfoI GCGC 3 cut(s) 491, 895, 1250
Cfr13I GGNCC 1 cut(s) 595
CseI GACGC 1 cut(s) 124
Csp6I GTAC 6 cut(s) 166, 265, 657, 779, 1023, 1099
CviAII CATG 5 cut(s) 340, 356, 832, 1152, 1187
CviQI GTAC 6 cut(s) 166, 265, 657, 779, 1023, 1099
DdeI CTNAG 5 cut(s) 309, 345, 416, 663, 789
DpnI GATC 2 cut(s) 32, 555
DpnII GATC 2 cut(s) 30, 553
DrdI GACNNNNNNGTC 1 cut(s) 178
DseDI GACNNNNNNGTC 1 cut(s) 178
EaeI YGGCCR 1 cut(s) 1141
Eco130I CCWWGG 4 cut(s) 289, 339, 451, 999
Eco147I AGGCCT 1 cut(s) 1089
Eco24I GRGCYC 1 cut(s) 315
Eco32I GATATC 1 cut(s) 709
Eco57I CTGAAG 1 cut(s) 497
Eco91I GGTNACC 2 cut(s) 1192, 1256
EcoO65I GGTNACC 2 cut(s) 1192, 1256
EcoRII CCWGG 4 cut(s) 174, 874, 1138, 1201
EcoRV GATATC 1 cut(s) 709
EcoT14I CCWWGG 4 cut(s) 289, 339, 451, 999
EcoT22I ATGCAT 1 cut(s) 100
EcoT38I GRGCYC 1 cut(s) 315
ErhI CCWWGG 4 cut(s) 289, 339, 451, 999
FaeI CATG 5 cut(s) 343, 359, 835, 1155, 1190
FaqI GGGAC 1 cut(s) 166
FatI CATG 5 cut(s) 339, 355, 831, 1151, 1186
FauI CCCGC 1 cut(s) 515
FauNDI CATATG 1 cut(s) 826
FblI GTMKAC 3 cut(s) 365, 576, 813
Fnu4HI GCNGC 3 cut(s) 249, 423, 750
FokI GGATG 2 cut(s) 1027, 1169
FriOI GRGCYC 1 cut(s) 315
Fsp4HI GCNGC 3 cut(s) 249, 423, 750
FspBI CTAG 2 cut(s) 237, 371
GlaI GCGC 3 cut(s) 490, 894, 1249
GluI GCNGC 3 cut(s) 249, 423, 750
GsaI CCCAGC 1 cut(s) 216
GsuI CTGGAG 1 cut(s) 897
HaeIII GGCC 3 cut(s) 597, 1089, 1143
HapII CCGG 3 cut(s) 184, 566, 1261
HgaI GACGC 1 cut(s) 124
HhaI GCGC 3 cut(s) 491, 895, 1250
Hin1II CATG 5 cut(s) 343, 359, 835, 1155, 1190
Hin6I GCGC 3 cut(s) 489, 893, 1248
HinP1I GCGC 3 cut(s) 489, 893, 1248
HindIII AAGCTT 1 cut(s) 1278
HinfI GANTC 7 cut(s) 578, 672, 818, 927, 987, 1171, 1183
HpaII CCGG 3 cut(s) 184, 566, 1261
HphI GGTGA 7 cut(s) 311, 416, 717, 1071, 1186, 1238, 1250
Hpy166II GTNNAC 7 cut(s) 366, 577, 657, 814, 951, 1099, 1132
Hpy188I TCNGA 6 cut(s) 484, 615, 635, 844, 982, 1217
Hpy188III TCNNGA 6 cut(s) 84, 227, 320, 662, 680, 1175
Hpy8I GTNNAC 7 cut(s) 366, 577, 657, 814, 951, 1099, 1132
Hpy99I CGWCG 2 cut(s) 40, 140
HpyAV CCTTC 4 cut(s) 237, 521, 1079, 1223
HpyCH4III ACNGT 5 cut(s) 383, 609, 694, 783, 955
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 95, 350, 428
HpyF3I CTNAG 5 cut(s) 309, 345, 416, 663, 789
Hsp92II CATG 5 cut(s) 343, 359, 835, 1155, 1190
HspAI GCGC 3 cut(s) 489, 893, 1248
Kzo9I GATC 2 cut(s) 30, 553
LmnI GCTCC 3 cut(s) 392, 760, 878
Lsp1109I GCAGC 3 cut(s) 235, 409, 736
LweI GCATC 6 cut(s) 9, 107, 132, 262, 1023, 1049
MaeI CTAG 2 cut(s) 237, 371
MaeIII GTNAC 6 cut(s) 299, 377, 497, 535, 1192, 1256
MalI GATC 2 cut(s) 32, 555
MboI GATC 2 cut(s) 30, 553
MboII GAAGA 7 cut(s) 33, 46, 169, 252, 476, 1120, 1192
MfeI CAATTG 1 cut(s) 426
MflI RGATCY 1 cut(s) 553
MhlI GDGCHC 3 cut(s) 315, 355, 1134
MluCI AATT 4 cut(s) 68, 79, 426, 1298
MlyI GAGTC 2 cut(s) 572, 1177
MnlI CCTC 9 cut(s) 55, 223, 342, 343, 367, 454, 645, 880, 1097
Mph1103I ATGCAT 1 cut(s) 100
MroXI GAANNNNTTC 1 cut(s) 671
MseI TTAA 1 cut(s) 1092
MslI CAYNNNNRTG 1 cut(s) 836
MspA1I CMGCKG 1 cut(s) 775
MspCI CTTAAG 1 cut(s) 1091
MspI CCGG 3 cut(s) 184, 566, 1261
MspR9I CCNGG 5 cut(s) 176, 184, 876, 1140, 1203
MunI CAATTG 1 cut(s) 426
Mva1269I GAATGC 1 cut(s) 1117
MvaI CCWGG 4 cut(s) 176, 876, 1140, 1203
MwoI GCNNNNNNNGC 4 cut(s) 56, 95, 350, 428
NciI CCSGG 1 cut(s) 184
NcoI CCATGG 1 cut(s) 339
NdeI CATATG 1 cut(s) 826
NdeII GATC 2 cut(s) 30, 553
NlaIII CATG 5 cut(s) 343, 359, 835, 1155, 1190
NlaIV GGNNCC 1 cut(s) 880
NmuCI GTSAC 5 cut(s) 299, 497, 535, 1192, 1256
NsiI ATGCAT 1 cut(s) 100
NspI RCATGY 1 cut(s) 359
PceI AGGCCT 1 cut(s) 1089
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PctI GAATGC 1 cut(s) 1117
PdmI GAANNNNTTC 1 cut(s) 671
PfeI GAWTC 5 cut(s) 672, 818, 927, 987, 1171
PfoI TCCNGGA 1 cut(s) 182
PkrI GCNGC 3 cut(s) 250, 424, 751
PleI GAGTC 2 cut(s) 572, 1177
PpsI GAGTC 2 cut(s) 572, 1177
PsiI TTATAA 1 cut(s) 329
Psp6I CCWGG 4 cut(s) 174, 874, 1138, 1201
PspEI GGTNACC 2 cut(s) 1192, 1256
PspFI CCCAGC 1 cut(s) 212
PspGI CCWGG 4 cut(s) 174, 874, 1138, 1201
PspN4I GGNNCC 1 cut(s) 880
PspPI GGNCC 1 cut(s) 595
PstNI CAGNNNCTG 1 cut(s) 126
PsuI RGATCY 1 cut(s) 553
PvuII CAGCTG 1 cut(s) 775
RsaI GTAC 6 cut(s) 167, 266, 658, 780, 1024, 1100
RsaNI GTAC 6 cut(s) 166, 265, 657, 779, 1023, 1099
RseI CAYNNNNRTG 1 cut(s) 836
SaqAI TTAA 1 cut(s) 1092
SatI GCNGC 3 cut(s) 249, 423, 750
Sau3AI GATC 2 cut(s) 30, 553
Sau96I GGNCC 1 cut(s) 595
SchI GAGTC 2 cut(s) 572, 1177
ScrFI CCNGG 5 cut(s) 176, 184, 876, 1140, 1203
SduI GDGCHC 3 cut(s) 315, 355, 1134
SfaNI GCATC 6 cut(s) 9, 107, 132, 262, 1023, 1049
SmiMI CAYNNNNRTG 1 cut(s) 836
SmlI CTYRAG 4 cut(s) 580, 896, 1091, 1175
SmoI CTYRAG 4 cut(s) 580, 896, 1091, 1175
Sse9I AATT 4 cut(s) 68, 79, 426, 1298
SseBI AGGCCT 1 cut(s) 1089
SsiI CCGC 4 cut(s) 48, 146, 508, 1012
SspI AATATT 1 cut(s) 640
SspMI CTAG 2 cut(s) 237, 371
StuI AGGCCT 1 cut(s) 1089
StyD4I CCNGG 5 cut(s) 174, 182, 874, 1138, 1201
StyI CCWWGG 4 cut(s) 289, 339, 451, 999
TaaI ACNGT 5 cut(s) 383, 609, 694, 783, 955
TaqI TCGA 3 cut(s) 29, 700, 860
TaqII GACCGA 1 cut(s) 176
TasI AATT 4 cut(s) 68, 79, 426, 1298
TatI WGTACW 3 cut(s) 165, 656, 1022
TfiI GAWTC 5 cut(s) 672, 818, 927, 987, 1171
Tru1I TTAA 1 cut(s) 1092
Tru9I TTAA 1 cut(s) 1092
TscAI CASTG 3 cut(s) 388, 552, 697
TseFI GTSAC 5 cut(s) 299, 497, 535, 1192, 1256
TseI GCWGC 3 cut(s) 248, 422, 749
Tsp45I GTSAC 5 cut(s) 299, 497, 535, 1192, 1256
TspGWI ACGGA 1 cut(s) 1116
TspRI CASTG 3 cut(s) 388, 552, 697
Vha464I CTTAAG 1 cut(s) 1091
VneI GTGCAC 1 cut(s) 1130
XapI RAATTY 1 cut(s) 68
XceI RCATGY 1 cut(s) 359
XmiI GTMKAC 3 cut(s) 365, 576, 813
XmnI GAANNNNTTC 1 cut(s) 671
XspI CTAG 2 cut(s) 237, 371
Zsp2I ATGCAT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.