Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0006887

Physical Location & Seq

Genomic Coordinates Reverse (-)

3048362 .. 3053993

Gene Structure 5632 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG031200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGGGAAGCTTCAAGCTGGTTATCTTTTTCCAGAGATTGCTAGGAGGAGGAATGCGCACTTGGAGAAGTACCCTGATGCGAAAATAATTCCCCTTGGAATTGGTGACACTACCGAGCCCATTCCAGAATATATAGCCTCTGCAATGGCAAAGAGAGCACTTGCCATGTCCACCCTAGAGGGTTACAGTGGTTATGGACCCGAACAAGGTGAAAAGCCACTGAGAACTGCAATTGCTAAAACATTTTATGATAACCTTGGCATAGAGGAAGATGATATATTTGTTTCTGATGGTGCAAAATGTGACATATCCCGCCTTCAGGTTCTTTTTGGGGAGGATAAAACAATAGCAGTGCAAGATCCATCATATCCGGCTTATGTAGACTCGAGTGTTATTATGGGCCAGACAGGACAGTACCAGAAATCTGTTGAGAAGTTCGCAAACATTGAGTACATGAGGTGTACTCCCAATAATGGATTTTTTCCTGATCTGTCCTCTACTAATCGAACAGATATCATATTTTTCTGTTCACCAAACAATCCTACTGGTTCTGCTGCAACAAGGGAGCAACTGACACAACTTGTAAAGTTTGCCAAGGATAATGGTTCAATCATAGTCTATGATTCTGCATATGCCTTGTATATGTCAGATGATAGTCCACGCTCCATCTTTGAAATCCCTGGAGCTAAAGATGTTGCAATTGAGACATCATCATTTAGCAAGTATGCTGGATTCACTGGAGTTCGTTTGGGGTGGACTGTGGTTCCAAAGCAGTTGCACTATTCGGATGGTTTTCAAGTCGCCAAGGACTTCAACCGCATTGTTTGTACTTGCTTCAATGGTGCATCCACTATTGCCCAAGCTGGTGGTCTGGCTTGCCTTGAACCAGAGGGTCTTAAGGCTATGCACGGGGTGATAAATTTCTACAAAGAAAATACTAATATCATAATGGAGACATTTAACTCCCTTGGCTTTAATGTGTATGGAGGGACGAATGCTCCATATGTGTGGGTCCACTTCCCCGGACAAAGCTCATGGGATGTGTTTGCTGAGATTCTTGAGAAGACTCATGTGGTTACCACACCTGGAAGTGGCTTTGGACCTGGTGGTGAAGGTTTCATCAGGGTTAGTGCCTTTGGTCACAGGGAAAATGTATTAGAAGCATGCAAGAGATTCAAGCAATTATACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008483 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009627 GO:0009719 GO:0009725 GO:0009735 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010285 GO:0014070 GO:0016740 GO:0016769 GO:0023052 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046677 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0098542 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00300 ko01100 ko01110 ko01130 ko01230 map00300 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

397

Amino Acids

43.66

Weight (kDa)

5.52

Isoelectric Point (pI)

49.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	28 - 392	3.8e-40	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33680
fragaria_vesca	FvH4_2g02700 FvH4_2g02700
malus_domestica	MD00G1080600.v1.1 MD05G1111000.v1.1 MD10G1114500.v1.1
prunus_persica	Prupe.8G156000_v2.0.a1
pyrus_communis	pycom05g10690 pycom10g09890 pycom10g09900
rosa_chinensis	RchiOBHm_Chr6g0247121
rosa_laevigata	RLG00000015219 RLG00000030359 RLG00000030363
rosa_multiflora	Rmu_sc0004577.1_g000011 Rmu_sc0030830.1_g000004
rosa_roxburghii	Rroxscaffold_3G00276080 Rroxscaffold_7G00214330
rosa_rugosa	Rorug05G0522500 Rorug05G0522600
rosa_samantha	Rh6AG037800 Rh6BG032400 Rh6BG032700 Rh6CG033500 Rh6DG031200
rosa_wichuraiana	Rw6G003220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	57
AccI	GTMKAC	1 cut(s)	381
AciI	CCGC	2 cut(s)	313, 817
AclWI	GGATC	1 cut(s)	353
AcsI	RAATTY	1 cut(s)	919
AcuI	CTGAAG	1 cut(s)	302
AdeI	CACNNNGTG	1 cut(s)	913
AfaI	GTAC	5 cut(s)	71, 416, 452, 463, 829
AfiI	CCNNNNNNNGG	4 cut(s)	206, 319, 473, 1091
AflII	CTTAAG	1 cut(s)	896
AgsI	TTSAA	8 cut(s)	14, 609, 674, 797, 814, 838, 884, 1177
AjnI	CCWGG	3 cut(s)	679, 1084, 1102
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AluBI	AGCT	5 cut(s)	10, 17, 686, 863, 1032
AluI	AGCT	5 cut(s)	10, 17, 686, 863, 1032
Alw21I	GWGCWC	1 cut(s)	160
Alw26I	GTCTC	2 cut(s)	698, 947
AlwI	GGATC	1 cut(s)	353
Ama87I	CYCGRG	1 cut(s)	385
AoxI	GGCC	1 cut(s)	400
ApeKI	GCWGC	1 cut(s)	554
ApoI	RAATTY	1 cut(s)	919
AspLEI	GCGC	1 cut(s)	58
AspS9I	GGNCC	4 cut(s)	197, 400, 1012, 1100
AsuC2I	CCSGG	1 cut(s)	1023
AsuHPI	GGTGA	5 cut(s)	116, 221, 522, 925, 1121
AvaI	CYCGRG	1 cut(s)	385
AvaII	GGWCC	3 cut(s)	197, 1012, 1100
BanII	GRGCYC	1 cut(s)	120
BbsI	GAAGAC	1 cut(s)	1070
Bbv12I	GWGCWC	1 cut(s)	160
BbvI	GCAGC	1 cut(s)	541
BccI	CCATC	4 cut(s)	284, 370, 674, 782
BciT130I	CCWGG	3 cut(s)	681, 1086, 1104
BcnI	CCSGG	1 cut(s)	1023
BcoDI	GTCTC	2 cut(s)	698, 947
BfaI	CTAG	2 cut(s)	42, 176
BfrI	CTTAAG	1 cut(s)	896
BisI	GCNGC	1 cut(s)	555
BlsI	GCNGC	1 cut(s)	556
Bme1390I	CCNGG	4 cut(s)	681, 1023, 1086, 1104
Bme18I	GGWCC	3 cut(s)	197, 1012, 1100
BmeT110I	CYCGRG	1 cut(s)	385
BmgT120I	GGNCC	4 cut(s)	197, 400, 1012, 1100
BmiI	GGNNCC	3 cut(s)	199, 765, 1013
BmrFI	CCNGG	4 cut(s)	681, 1023, 1086, 1104
BmsI	GCATC	2 cut(s)	67, 854
BpiI	GAAGAC	1 cut(s)	1070
BplI	GAGNNNNNCTC	2 cut(s)	448, 480
BpmI	CTGGAG	2 cut(s)	702, 759
BpuEI	CTTGAG	1 cut(s)	1079
BpuMI	CCSGG	1 cut(s)	1023
BsaJI	CCNNGG	7 cut(s)	94, 256, 594, 679, 804, 967, 1021
BsaXI	ACNNNNNCTCC	2 cut(s)	982, 1012
Bsc4I	CCNNNNNNNGG	4 cut(s)	206, 319, 473, 1091
Bse1I	ACTGG	2 cut(s)	550, 742
Bse3DI	GCAATG	1 cut(s)	150
BseBI	CCWGG	3 cut(s)	681, 1086, 1104
BseDI	CCNNGG	7 cut(s)	94, 256, 594, 679, 804, 967, 1021
BseGI	GGATG	3 cut(s)	793, 845, 1045
BseLI	CCNNNNNNNGG	4 cut(s)	206, 319, 473, 1091
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	2 cut(s)	212, 1041
BseNI	ACTGG	2 cut(s)	550, 742
BseRI	GAGGAG	1 cut(s)	61
BseXI	GCAGC	1 cut(s)	541
BshFI	GGCC	1 cut(s)	402
BsiHKAI	GWGCWC	1 cut(s)	160
BsiHKCI	CYCGRG	1 cut(s)	385
BsiSI	CCGG	2 cut(s)	371, 1023
BslFI	GGGAC	1 cut(s)	1003
BslI	CCNNNNNNNGG	4 cut(s)	206, 319, 473, 1091
BsmAI	GTCTC	2 cut(s)	698, 947
BsmFI	GGGAC	1 cut(s)	1003
BsmI	GAATGC	2 cut(s)	58, 1000
BsnI	GGCC	1 cut(s)	402
BsoBI	CYCGRG	1 cut(s)	385
Bsp1286I	GDGCHC	2 cut(s)	120, 160
Bsp143I	GATC	2 cut(s)	358, 487
BspACI	CCGC	2 cut(s)	313, 817
BspANI	GGCC	1 cut(s)	402
BspCNI	CTCAG	2 cut(s)	213, 1042
BspLI	GGNNCC	3 cut(s)	199, 765, 1013
BspPI	GGATC	1 cut(s)	353
BspTI	CTTAAG	1 cut(s)	896
BsrDI	GCAATG	1 cut(s)	150
BsrI	ACTGG	2 cut(s)	550, 742
BssECI	CCNNGG	7 cut(s)	94, 256, 594, 679, 804, 967, 1021
BssMI	GATC	2 cut(s)	358, 487
BssT1I	CCWWGG	5 cut(s)	94, 256, 594, 804, 967
Bst2UI	CCWGG	3 cut(s)	681, 1086, 1104
Bst4CI	ACNGT	3 cut(s)	188, 414, 760
BstAFI	CTTAAG	1 cut(s)	896
BstC8I	GCNNGC	2 cut(s)	877, 1165
BstDEI	CTNAG	2 cut(s)	221, 1050
BstEII	GGTNACC	1 cut(s)	1075
BstF5I	GGATG	3 cut(s)	793, 845, 1045
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	2 cut(s)	361, 490
BstMAI	GTCTC	2 cut(s)	698, 947
BstMBI	GATC	2 cut(s)	358, 487
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNI	CCWGG	3 cut(s)	681, 1086, 1104
BstNSI	RCATGY	1 cut(s)	1167
BstPI	GGTNACC	1 cut(s)	1075
BstSCI	CCNGG	4 cut(s)	679, 1021, 1084, 1102
BstV1I	GCAGC	1 cut(s)	541
BstV2I	GAAGAC	1 cut(s)	1070
BstX2I	RGATCY	1 cut(s)	358
BstXI	CCANNNNNNTGG	2 cut(s)	866, 1008
BstYI	RGATCY	1 cut(s)	358
BsuRI	GGCC	1 cut(s)	402
BtsCI	GGATG	3 cut(s)	793, 845, 1045
BtsI	GCAGTG	1 cut(s)	357
BtsIMutI	CAGTG	4 cut(s)	193, 218, 357, 735
Cac8I	GCNNGC	2 cut(s)	877, 1165
CfoI	GCGC	1 cut(s)	58
Cfr13I	GGNCC	4 cut(s)	197, 400, 1012, 1100
CsiI	ACCWGGT	1 cut(s)	1102
Csp6I	GTAC	5 cut(s)	70, 415, 451, 462, 828
CviAII	CATG	5 cut(s)	166, 454, 1035, 1070, 1164
CviQI	GTAC	5 cut(s)	70, 415, 451, 462, 828
DdeI	CTNAG	2 cut(s)	221, 1050
DpnI	GATC	2 cut(s)	360, 489
DpnII	GATC	2 cut(s)	358, 487
DraIII	CACNNNGTG	1 cut(s)	913
Eco130I	CCWWGG	5 cut(s)	94, 256, 594, 804, 967
Eco24I	GRGCYC	1 cut(s)	120
Eco32I	GATATC	1 cut(s)	514
Eco47I	GGWCC	3 cut(s)	197, 1012, 1100
Eco57I	CTGAAG	1 cut(s)	302
Eco88I	CYCGRG	1 cut(s)	385
Eco91I	GGTNACC	1 cut(s)	1075
EcoO65I	GGTNACC	1 cut(s)	1075
EcoRII	CCWGG	3 cut(s)	679, 1084, 1102
EcoRV	GATATC	1 cut(s)	514
EcoT14I	CCWWGG	5 cut(s)	94, 256, 594, 804, 967
EcoT38I	GRGCYC	1 cut(s)	120
ErhI	CCWWGG	5 cut(s)	94, 256, 594, 804, 967
FaeI	CATG	5 cut(s)	169, 457, 1038, 1073, 1167
FaqI	GGGAC	1 cut(s)	1003
FatI	CATG	5 cut(s)	165, 453, 1034, 1069, 1163
FauI	CCCGC	1 cut(s)	320
FauNDI	CATATG	2 cut(s)	631, 1003
FblI	GTMKAC	1 cut(s)	381
Fnu4HI	GCNGC	1 cut(s)	555
FokI	GGATG	3 cut(s)	800, 832, 1052
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	1 cut(s)	555
FspAI	RTGCGCAY	1 cut(s)	57
FspBI	CTAG	2 cut(s)	42, 176
FspI	TGCGCA	1 cut(s)	57
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	1 cut(s)	555
GsuI	CTGGAG	2 cut(s)	702, 759
HaeIII	GGCC	1 cut(s)	402
HapII	CCGG	2 cut(s)	371, 1023
HhaI	GCGC	1 cut(s)	58
Hin1II	CATG	5 cut(s)	169, 457, 1038, 1073, 1167
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	6 cut(s)	383, 623, 732, 1054, 1066, 1173
HpaII	CCGG	2 cut(s)	371, 1023
HphI	GGTGA	5 cut(s)	116, 221, 522, 925, 1121
Hpy166II	GTNNAC	7 cut(s)	171, 382, 462, 530, 659, 756, 1015
Hpy188I	TCNGA	3 cut(s)	289, 649, 787
Hpy188III	TCNNGA	4 cut(s)	32, 125, 485, 1058
Hpy8I	GTNNAC	7 cut(s)	171, 382, 462, 530, 659, 756, 1015
HpyAV	CCTTC	2 cut(s)	326, 1106
HpyCH4III	ACNGT	3 cut(s)	188, 414, 760
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	2 cut(s)	221, 1050
Hsp92II	CATG	5 cut(s)	169, 457, 1038, 1073, 1167
HspAI	GCGC	1 cut(s)	56
Kzo9I	GATC	2 cut(s)	358, 487
LmnI	GCTCC	4 cut(s)	565, 668, 683, 1003
Lsp1109I	GCAGC	1 cut(s)	541
LweI	GCATC	2 cut(s)	67, 854
MabI	ACCWGGT	1 cut(s)	1102
MaeI	CTAG	2 cut(s)	42, 176
MaeIII	GTNAC	5 cut(s)	104, 182, 302, 1075, 1139
MalI	GATC	2 cut(s)	360, 489
MboI	GATC	2 cut(s)	358, 487
MboII	GAAGA	2 cut(s)	281, 1075
MfeI	CAATTG	2 cut(s)	231, 699
MflI	RGATCY	1 cut(s)	358
MhlI	GDGCHC	2 cut(s)	120, 160
MluCI	AATT	6 cut(s)	87, 99, 231, 699, 919, 1181
MlyI	GAGTC	2 cut(s)	377, 1060
MseI	TTAA	3 cut(s)	897, 960, 975
MslI	CAYNNNNRTG	1 cut(s)	1006
MspCI	CTTAAG	1 cut(s)	896
MspI	CCGG	2 cut(s)	371, 1023
MspR9I	CCNGG	4 cut(s)	681, 1023, 1086, 1104
MunI	CAATTG	2 cut(s)	231, 699
Mva1269I	GAATGC	2 cut(s)	58, 1000
MvaI	CCWGG	3 cut(s)	681, 1086, 1104
MwoI	GCNNNNNNNGC	1 cut(s)	155
NciI	CCSGG	1 cut(s)	1023
NdeI	CATATG	2 cut(s)	631, 1003
NdeII	GATC	2 cut(s)	358, 487
NlaIII	CATG	5 cut(s)	169, 457, 1038, 1073, 1167
NlaIV	GGNNCC	3 cut(s)	199, 765, 1013
NmuCI	GTSAC	3 cut(s)	104, 302, 1139
NsbI	TGCGCA	1 cut(s)	57
NspI	RCATGY	1 cut(s)	1167
PaeI	GCATGC	1 cut(s)	1167
PaeR7I	CTCGAG	1 cut(s)	385
PctI	GAATGC	2 cut(s)	58, 1000
PfeI	GAWTC	4 cut(s)	623, 732, 1054, 1173
PkrI	GCNGC	1 cut(s)	556
PleI	GAGTC	2 cut(s)	377, 1060
PpsI	GAGTC	2 cut(s)	377, 1060
Psp6I	CCWGG	3 cut(s)	679, 1084, 1102
PspEI	GGTNACC	1 cut(s)	1075
PspGI	CCWGG	3 cut(s)	679, 1084, 1102
PspN4I	GGNNCC	3 cut(s)	199, 765, 1013
PspPI	GGNCC	4 cut(s)	197, 400, 1012, 1100
PspXI	VCTCGAGB	1 cut(s)	385
PsuI	RGATCY	1 cut(s)	358
RsaI	GTAC	5 cut(s)	71, 416, 452, 463, 829
RsaNI	GTAC	5 cut(s)	70, 415, 451, 462, 828
RseI	CAYNNNNRTG	1 cut(s)	1006
SaqAI	TTAA	3 cut(s)	897, 960, 975
SatI	GCNGC	1 cut(s)	555
Sau3AI	GATC	2 cut(s)	358, 487
Sau96I	GGNCC	4 cut(s)	197, 400, 1012, 1100
SchI	GAGTC	2 cut(s)	377, 1060
ScrFI	CCNGG	4 cut(s)	681, 1023, 1086, 1104
SduI	GDGCHC	2 cut(s)	120, 160
SexAI	ACCWGGT	1 cut(s)	1102
SfaNI	GCATC	2 cut(s)	67, 854
Sfr274I	CTCGAG	1 cut(s)	385
SinI	GGWCC	3 cut(s)	197, 1012, 1100
SlaI	CTCGAG	1 cut(s)	385
SmiMI	CAYNNNNRTG	1 cut(s)	1006
SmlI	CTYRAG	3 cut(s)	385, 896, 1058
SmoI	CTYRAG	3 cut(s)	385, 896, 1058
SphI	GCATGC	1 cut(s)	1167
Sse9I	AATT	6 cut(s)	87, 99, 231, 699, 919, 1181
SsiI	CCGC	2 cut(s)	313, 817
SspMI	CTAG	2 cut(s)	42, 176
StyD4I	CCNGG	4 cut(s)	679, 1021, 1084, 1102
StyI	CCWWGG	5 cut(s)	94, 256, 594, 804, 967
TaaI	ACNGT	3 cut(s)	188, 414, 760
TaqI	TCGA	2 cut(s)	386, 505
TasI	AATT	6 cut(s)	87, 99, 231, 699, 919, 1181
TatI	WGTACW	3 cut(s)	450, 461, 827
TfiI	GAWTC	4 cut(s)	623, 732, 1054, 1173
Tru1I	TTAA	3 cut(s)	897, 960, 975
Tru9I	TTAA	3 cut(s)	897, 960, 975
TscAI	CASTG	4 cut(s)	193, 225, 357, 742
TseFI	GTSAC	3 cut(s)	104, 302, 1139
TseI	GCWGC	1 cut(s)	554
Tsp45I	GTSAC	3 cut(s)	104, 302, 1139
TspDTI	ATGAA	1 cut(s)	1108
TspRI	CASTG	4 cut(s)	193, 225, 357, 742
Vha464I	CTTAAG	1 cut(s)	896
VpaK11BI	GGWCC	3 cut(s)	197, 1012, 1100
XapI	RAATTY	1 cut(s)	919
XceI	RCATGY	1 cut(s)	1167
XhoI	CTCGAG	1 cut(s)	385
XmiI	GTMKAC	1 cut(s)	381
XspI	CTAG	2 cut(s)	42, 176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.