FvH4_2g02700

LL-diaminopimelate aminotransferase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
2157197 .. 2160809
3613 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02700.t2

Sequence Viewer

Length: 1398 bp
ATGGCACTGAGTCAAGCTTCAATCGCGTCGTCTTCGTCGGCCTTCTTCGCTCAGACCGCCTTGGATTTCAAGTCCAGGACCTCCAGGGCGCAGACCGTCGCGGTTCCCGCCAAAACCGTCGGCGTCTGCAAATGCGTCGCCGCTCCGGAGAAGACAGAGTACAAGACTCAGGTGAATCGCAATGCCAACATGGCCAAGCTTCAAGCCGGTTATCTTTTTCCAGAGATTGCGAGGAGGAGGAATGCGCACTTGCAGAAGCACCCTGATGCGAAGATAATTCCACTTGGAATTGGAGATACTACCGAGCCAATTCCAGAATATATAACCTCTGCAATGGCAAAGAGAGCACTTGCCATGTCCACCCTAGAGGGTTACAGTGGTTATGGACCTGAACAAGGTGAAAAGCCACTGAGAGTTGCAATTGCTAAAACGTTTTATGGCGACCTTGGCATAGAGGAAGATGACATATTTGTTTCTGATGGGGCAAAATGTGACATATCCCGCCTTCAGGTTCTTTTTGGGGCGGATAAAACAATAGCAGTGCAAGATCCATCGTATCCGGCTTATGTAGATTCAAGTGTTATTATGGGCCAGACAGGACAGTATCAGAAATCTGTTGAGAAGTTTGGAAACATCGAGTACATGAGGTGTACTCCCGATAATGGATTTTTTCCTGATCTGTCCTCTACTAAGCGAACAGATATCATATTTTTCTGTTCACCAAACAATCCTACTGGTTCTGCTGCAACAAGGGAGCAACTGACACAACTTGTAAAGTTTGCCAAGGATAATGGTTCAATCATAGTCTATGATTCTGCATATGCCATGTATATGTCAGATGATAATCCACGCTCCATCTTTGAAATCCCTGGAGCTAAAGATGTAAGTTTGCAATCAGTTGCACTTGAGACATCATCATTTAGTAAGTATGCCGGATTCACTGGAGTTCGTTTGGGGTGGACTGTGGTTCCAAAGCAGTTGCAGTATTCAGATGGTTTTCCAGTTGCCAAGGATTTCAACCGCATTGTTTGTACTTGCTTCAATGGTGCATCCACTATTGTCCAAGCTGGTGGTCTGGCTTGCCTTCAACCAGAGGGTCTTAAGGCTATGCACGGTGTGATAAATTTCTACAAAGAAAATACTAAGATCATAATGGAGACATTTAACTCTCTTGGCTTTAACGTGTATGGAGGGACGAATGCTCCATATGTGTGGGTTCACTTCCCCGGACAAAGCTCCTGGGATGTGTTTGCTGAGATCCTTGAGAAGACTCATGTGGTAACCACACCTGGAAGTGGCTTTGGACCTGGTGGTGAAGGTTTCATCAGGGTCAGTGCCTTTGGACACAGGGAAAATATATTAGAAGCATGCAAAAGATTCAAGCAATTATACAAGTGA

Protein Analysis

466

Amino Acids

50.76

Weight (kDa)

7.95

Isoelectric Point (pI)

48.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 91 - 455 1.6e-38 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 246
AccBSI CCGCTC 1 cut(s) 143
AccII CGCG 2 cut(s) 26, 101
AccIII TCCGGA 1 cut(s) 145
AciI CCGC 7 cut(s) 57, 101, 108, 141, 502, 524, 1021
AclI AACGTT 1 cut(s) 431
AclWI GGATC 2 cut(s) 542, 1252
AcoI YGGCCR 1 cut(s) 192
AcsI RAATTY 1 cut(s) 1123
AcuI CTGAAG 1 cut(s) 491
AcyI GRCGYC 1 cut(s) 123
AdeI CACNNNGTG 1 cut(s) 1117
AfaI GTAC 4 cut(s) 161, 641, 652, 1033
AfiI CCNNNNNNNGG 4 cut(s) 395, 508, 662, 1295
AflII CTTAAG 1 cut(s) 1100
AflIII ACRYGT 1 cut(s) 1182
AjnI CCWGG 6 cut(s) 74, 83, 868, 1238, 1288, 1306
AluBI AGCT 5 cut(s) 17, 199, 875, 1067, 1236
AluI AGCT 5 cut(s) 17, 199, 875, 1067, 1236
Alw21I GWGCWC 1 cut(s) 349
Alw26I GTCTC 2 cut(s) 902, 1151
AlwI GGATC 2 cut(s) 542, 1252
Aor13HI TCCGGA 1 cut(s) 145
AoxI GGCC 3 cut(s) 39, 192, 589
ApeKI GCWGC 1 cut(s) 743
ApoI RAATTY 1 cut(s) 1123
AspLEI GCGC 2 cut(s) 91, 247
AspS9I GGNCC 4 cut(s) 78, 386, 589, 1304
AsuC2I CCSGG 1 cut(s) 1227
AsuHPI GGTGA 4 cut(s) 184, 410, 711, 1325
AvaII GGWCC 3 cut(s) 78, 386, 1304
BalI TGGCCA 1 cut(s) 194
BarI GAAGNNNNNNTAC 2 cut(s) 143, 175
BbsI GAAGAC 3 cut(s) 24, 158, 1274
Bbv12I GWGCWC 1 cut(s) 349
BbvI GCAGC 1 cut(s) 730
BccI CCATC 4 cut(s) 473, 559, 863, 986
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BciT130I CCWGG 6 cut(s) 76, 85, 870, 1240, 1290, 1308
BciVI GTATCC 1 cut(s) 567
BcnI CCSGG 1 cut(s) 1227
BcoDI GTCTC 2 cut(s) 902, 1151
BfaI CTAG 1 cut(s) 365
BfrI CTTAAG 1 cut(s) 1100
BfuI GTATCC 1 cut(s) 567
BglI GCCNNNNNGGC 1 cut(s) 191
BisI GCNGC 2 cut(s) 141, 744
BlsI GCNGC 2 cut(s) 142, 745
Bme1390I CCNGG 7 cut(s) 76, 85, 870, 1227, 1240, 1290, 1308
Bme18I GGWCC 3 cut(s) 78, 386, 1304
BmgT120I GGNCC 4 cut(s) 78, 386, 589, 1304
BmiI GGNNCC 2 cut(s) 105, 969
BmrFI CCNGG 7 cut(s) 76, 85, 870, 1227, 1240, 1290, 1308
BmsI GCATC 2 cut(s) 256, 1058
BpiI GAAGAC 3 cut(s) 24, 158, 1274
BplI GAGNNNNNCTC 2 cut(s) 637, 669
BpmI CTGGAG 3 cut(s) 67, 891, 963
BpuEI CTTGAG 2 cut(s) 926, 1283
BpuMI CCSGG 1 cut(s) 1227
BsaBI GATNNNNATC 1 cut(s) 843
BsaHI GRCGYC 1 cut(s) 123
BsaJI CCNNGG 8 cut(s) 60, 84, 445, 783, 868, 1008, 1225, 1239
BsaWI WCCGGW 1 cut(s) 145
BsaXI ACNNNNNCTCC 2 cut(s) 1186, 1216
Bsc4I CCNNNNNNNGG 4 cut(s) 395, 508, 662, 1295
Bse118I RCCGGY 1 cut(s) 206
Bse1I ACTGG 3 cut(s) 739, 946, 1001
Bse3DI GCAATG 2 cut(s) 187, 339
Bse8I GATNNNNATC 1 cut(s) 843
BseAI TCCGGA 1 cut(s) 145
BseBI CCWGG 6 cut(s) 76, 85, 870, 1240, 1290, 1308
BseDI CCNNGG 8 cut(s) 60, 84, 445, 783, 868, 1008, 1225, 1239
BseGI GGATG 2 cut(s) 1049, 1249
BseJI GATNNNNATC 1 cut(s) 843
BseLI CCNNNNNNNGG 4 cut(s) 395, 508, 662, 1295
BseMI GCAATG 2 cut(s) 187, 339
BseMII CTCAG 4 cut(s) 65, 182, 401, 1245
BseNI ACTGG 3 cut(s) 739, 946, 1001
BseRI GAGGAG 2 cut(s) 247, 250
BseXI GCAGC 1 cut(s) 730
Bsh1236I CGCG 2 cut(s) 26, 101
BshFI GGCC 3 cut(s) 41, 194, 591
BsiHKAI GWGCWC 1 cut(s) 349
BsiSI CCGG 5 cut(s) 146, 207, 560, 933, 1227
BslFI GGGAC 1 cut(s) 1207
BslI CCNNNNNNNGG 4 cut(s) 395, 508, 662, 1295
BsmAI GTCTC 2 cut(s) 902, 1151
BsmFI GGGAC 1 cut(s) 1207
BsmI GAATGC 2 cut(s) 247, 1204
BsnI GGCC 3 cut(s) 41, 194, 591
Bsp1286I GDGCHC 1 cut(s) 349
Bsp13I TCCGGA 1 cut(s) 145
Bsp143I GATC 4 cut(s) 547, 676, 1146, 1257
BspACI CCGC 7 cut(s) 57, 101, 108, 141, 502, 524, 1021
BspANI GGCC 3 cut(s) 41, 194, 591
BspCNI CTCAG 4 cut(s) 64, 181, 402, 1246
BspEI TCCGGA 1 cut(s) 145
BspFNI CGCG 2 cut(s) 26, 101
BspLI GGNNCC 2 cut(s) 105, 969
BspPI GGATC 2 cut(s) 542, 1252
BspTI CTTAAG 1 cut(s) 1100
BsrBI CCGCTC 1 cut(s) 143
BsrDI GCAATG 2 cut(s) 187, 339
BsrFI RCCGGY 1 cut(s) 206
BsrI ACTGG 3 cut(s) 739, 946, 1001
BssAI RCCGGY 1 cut(s) 206
BssECI CCNNGG 8 cut(s) 60, 84, 445, 783, 868, 1008, 1225, 1239
BssMI GATC 4 cut(s) 547, 676, 1146, 1257
BssNI GRCGYC 1 cut(s) 123
BssT1I CCWWGG 4 cut(s) 60, 445, 783, 1008
Bst2UI CCWGG 6 cut(s) 76, 85, 870, 1240, 1290, 1308
Bst4CI ACNGT 6 cut(s) 97, 118, 377, 603, 964, 1115
BstACI GRCGYC 1 cut(s) 123
BstAFI CTTAAG 1 cut(s) 1100
BstC8I GCNNGC 2 cut(s) 1081, 1369
BstDEI CTNAG 7 cut(s) 8, 51, 168, 410, 690, 1143, 1254
BstEII GGTNACC 1 cut(s) 1279
BstENI CCTNNNNNAGG 1 cut(s) 393
BstF5I GGATG 2 cut(s) 1049, 1249
BstFNI CGCG 2 cut(s) 26, 101
BstHHI GCGC 2 cut(s) 91, 247
BstKTI GATC 4 cut(s) 550, 679, 1149, 1260
BstMAI GTCTC 2 cut(s) 902, 1151
BstMBI GATC 4 cut(s) 547, 676, 1146, 1257
BstMWI GCNNNNNNNGC 7 cut(s) 23, 47, 56, 107, 191, 344, 447
BstNI CCWGG 6 cut(s) 76, 85, 870, 1240, 1290, 1308
BstNSI RCATGY 1 cut(s) 1371
BstPI GGTNACC 1 cut(s) 1279
BstSCI CCNGG 7 cut(s) 74, 83, 868, 1225, 1238, 1288, 1306
BstUI CGCG 2 cut(s) 26, 101
BstV1I GCAGC 1 cut(s) 730
BstV2I GAAGAC 3 cut(s) 24, 158, 1274
BstX2I RGATCY 2 cut(s) 547, 1257
BstXI CCANNNNNNTGG 2 cut(s) 1070, 1212
BstYI RGATCY 2 cut(s) 547, 1257
BsuI GTATCC 1 cut(s) 567
BsuRI GGCC 3 cut(s) 41, 194, 591
BtsCI GGATG 2 cut(s) 1049, 1249
BtsI GCAGTG 1 cut(s) 546
BtsIMutI CAGTG 6 cut(s) 5, 382, 407, 546, 939, 1339
Cac8I GCNNGC 2 cut(s) 1081, 1369
CfoI GCGC 2 cut(s) 91, 247
Cfr10I RCCGGY 1 cut(s) 206
Cfr13I GGNCC 4 cut(s) 78, 386, 589, 1304
CseI GACGC 3 cut(s) 15, 112, 124
CsiI ACCWGGT 1 cut(s) 1306
Csp6I GTAC 4 cut(s) 160, 640, 651, 1032
CviAII CATG 6 cut(s) 190, 355, 643, 826, 1274, 1368
CviQI GTAC 4 cut(s) 160, 640, 651, 1032
DdeI CTNAG 7 cut(s) 8, 51, 168, 410, 690, 1143, 1254
DpnI GATC 4 cut(s) 549, 678, 1148, 1259
DpnII GATC 4 cut(s) 547, 676, 1146, 1257
DraIII CACNNNGTG 1 cut(s) 1117
EaeI YGGCCR 1 cut(s) 192
EciI GGCGGA 1 cut(s) 539
Eco130I CCWWGG 4 cut(s) 60, 445, 783, 1008
Eco32I GATATC 1 cut(s) 703
Eco47I GGWCC 3 cut(s) 78, 386, 1304
Eco57I CTGAAG 1 cut(s) 491
Eco91I GGTNACC 1 cut(s) 1279
EcoNI CCTNNNNNAGG 1 cut(s) 393
EcoO109I RGGNCCY 1 cut(s) 78
EcoO65I GGTNACC 1 cut(s) 1279
EcoRII CCWGG 6 cut(s) 74, 83, 868, 1238, 1288, 1306
EcoRV GATATC 1 cut(s) 703
EcoT14I CCWWGG 4 cut(s) 60, 445, 783, 1008
ErhI CCWWGG 4 cut(s) 60, 445, 783, 1008
FaeI CATG 6 cut(s) 193, 358, 646, 829, 1277, 1371
FaqI GGGAC 1 cut(s) 1207
FatI CATG 6 cut(s) 189, 354, 642, 825, 1273, 1367
FauI CCCGC 2 cut(s) 115, 509
FauNDI CATATG 2 cut(s) 820, 1207
Fnu4HI GCNGC 2 cut(s) 141, 744
FokI GGATG 2 cut(s) 1036, 1256
Fsp4HI GCNGC 2 cut(s) 141, 744
FspAI RTGCGCAY 1 cut(s) 246
FspBI CTAG 1 cut(s) 365
FspI TGCGCA 1 cut(s) 246
GlaI GCGC 2 cut(s) 90, 246
GluI GCNGC 2 cut(s) 141, 744
GsuI CTGGAG 3 cut(s) 67, 891, 963
HaeIII GGCC 3 cut(s) 41, 194, 591
HapII CCGG 5 cut(s) 146, 207, 560, 933, 1227
HgaI GACGC 3 cut(s) 15, 112, 124
HhaI GCGC 2 cut(s) 91, 247
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 6 cut(s) 193, 358, 646, 829, 1277, 1371
Hin6I GCGC 2 cut(s) 89, 245
HinP1I GCGC 2 cut(s) 89, 245
HindIII AAGCTT 2 cut(s) 15, 197
HinfI GANTC 8 cut(s) 10, 166, 175, 572, 812, 936, 1270, 1377
HpaII CCGG 5 cut(s) 146, 207, 560, 933, 1227
HphI GGTGA 4 cut(s) 184, 410, 711, 1325
Hpy166II GTNNAC 5 cut(s) 360, 651, 719, 960, 1219
Hpy188I TCNGA 5 cut(s) 54, 478, 609, 838, 991
Hpy188III TCNNGA 5 cut(s) 146, 221, 314, 656, 674
Hpy8I GTNNAC 5 cut(s) 360, 651, 719, 960, 1219
Hpy99I CGWCG 5 cut(s) 31, 40, 101, 122, 140
HpyAV CCTTC 4 cut(s) 52, 515, 1094, 1310
HpyCH4III ACNGT 6 cut(s) 97, 118, 377, 603, 964, 1115
HpyCH4IV ACGT 2 cut(s) 431, 1182
HpyF10VI GCNNNNNNNGC 7 cut(s) 23, 47, 56, 107, 191, 344, 447
HpyF3I CTNAG 7 cut(s) 8, 51, 168, 410, 690, 1143, 1254
HpySE526I ACGT 2 cut(s) 431, 1182
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 6 cut(s) 193, 358, 646, 829, 1277, 1371
HspAI GCGC 2 cut(s) 89, 245
Kpn2I TCCGGA 1 cut(s) 145
Kzo9I GATC 4 cut(s) 547, 676, 1146, 1257
LmnI GCTCC 6 cut(s) 148, 754, 857, 872, 1207, 1241
Lsp1109I GCAGC 1 cut(s) 730
LweI GCATC 2 cut(s) 256, 1058
MabI ACCWGGT 1 cut(s) 1306
MaeI CTAG 1 cut(s) 365
MaeII ACGT 2 cut(s) 431, 1182
MaeIII GTNAC 3 cut(s) 371, 491, 1279
MalI GATC 4 cut(s) 549, 678, 1148, 1259
MbiI CCGCTC 1 cut(s) 143
MboI GATC 4 cut(s) 547, 676, 1146, 1257
MboII GAAGA 6 cut(s) 24, 37, 163, 283, 470, 1279
MfeI CAATTG 1 cut(s) 420
MflI RGATCY 2 cut(s) 547, 1257
MhlI GDGCHC 1 cut(s) 349
MlsI TGGCCA 1 cut(s) 194
MluCI AATT 6 cut(s) 276, 288, 309, 420, 1123, 1385
MluNI TGGCCA 1 cut(s) 194
MlyI GAGTC 3 cut(s) 19, 160, 1264
Mox20I TGGCCA 1 cut(s) 194
MroI TCCGGA 1 cut(s) 145
MscI TGGCCA 1 cut(s) 194
MseI TTAA 3 cut(s) 1101, 1164, 1179
MslI CAYNNNNRTG 3 cut(s) 264, 830, 1210
Msp20I TGGCCA 1 cut(s) 194
MspCI CTTAAG 1 cut(s) 1100
MspI CCGG 5 cut(s) 146, 207, 560, 933, 1227
MspR9I CCNGG 7 cut(s) 76, 85, 870, 1227, 1240, 1290, 1308
MunI CAATTG 1 cut(s) 420
Mva1269I GAATGC 2 cut(s) 247, 1204
MvaI CCWGG 6 cut(s) 76, 85, 870, 1240, 1290, 1308
MvnI CGCG 2 cut(s) 26, 101
MwoI GCNNNNNNNGC 7 cut(s) 23, 47, 56, 107, 191, 344, 447
NciI CCSGG 1 cut(s) 1227
NdeI CATATG 2 cut(s) 820, 1207
NdeII GATC 4 cut(s) 547, 676, 1146, 1257
NlaIII CATG 6 cut(s) 193, 358, 646, 829, 1277, 1371
NlaIV GGNNCC 2 cut(s) 105, 969
NmuCI GTSAC 1 cut(s) 491
NsbI TGCGCA 1 cut(s) 246
NspI RCATGY 1 cut(s) 1371
PaeI GCATGC 1 cut(s) 1371
PctI GAATGC 2 cut(s) 247, 1204
PfeI GAWTC 5 cut(s) 175, 572, 812, 936, 1377
PfoI TCCNGGA 1 cut(s) 74
PkrI GCNGC 2 cut(s) 142, 745
PleI GAGTC 3 cut(s) 18, 160, 1264
PpsI GAGTC 3 cut(s) 18, 160, 1264
PpuMI RGGWCCY 1 cut(s) 78
Psp1406I AACGTT 1 cut(s) 431
Psp5II RGGWCCY 1 cut(s) 78
Psp6I CCWGG 6 cut(s) 74, 83, 868, 1238, 1288, 1306
PspEI GGTNACC 1 cut(s) 1279
PspGI CCWGG 6 cut(s) 74, 83, 868, 1238, 1288, 1306
PspN4I GGNNCC 2 cut(s) 105, 969
PspPI GGNCC 4 cut(s) 78, 386, 589, 1304
PspPPI RGGWCCY 1 cut(s) 78
PsuI RGATCY 2 cut(s) 547, 1257
RsaI GTAC 4 cut(s) 161, 641, 652, 1033
RsaNI GTAC 4 cut(s) 160, 640, 651, 1032
RseI CAYNNNNRTG 3 cut(s) 264, 830, 1210
SaqAI TTAA 3 cut(s) 1101, 1164, 1179
SatI GCNGC 2 cut(s) 141, 744
Sau3AI GATC 4 cut(s) 547, 676, 1146, 1257
Sau96I GGNCC 4 cut(s) 78, 386, 589, 1304
SchI GAGTC 3 cut(s) 19, 160, 1264
ScrFI CCNGG 7 cut(s) 76, 85, 870, 1227, 1240, 1290, 1308
SduI GDGCHC 1 cut(s) 349
SexAI ACCWGGT 1 cut(s) 1306
SfaNI GCATC 2 cut(s) 256, 1058
SinI GGWCC 3 cut(s) 78, 386, 1304
SmiMI CAYNNNNRTG 3 cut(s) 264, 830, 1210
SmlI CTYRAG 3 cut(s) 905, 1100, 1262
SmoI CTYRAG 3 cut(s) 905, 1100, 1262
SphI GCATGC 1 cut(s) 1371
Sse9I AATT 6 cut(s) 276, 288, 309, 420, 1123, 1385
SsiI CCGC 7 cut(s) 57, 101, 108, 141, 502, 524, 1021
SspMI CTAG 1 cut(s) 365
StyD4I CCNGG 7 cut(s) 74, 83, 868, 1225, 1238, 1288, 1306
StyI CCWWGG 4 cut(s) 60, 445, 783, 1008
TaaI ACNGT 6 cut(s) 97, 118, 377, 603, 964, 1115
TaiI ACGT 2 cut(s) 434, 1185
TaqI TCGA 1 cut(s) 636
TasI AATT 6 cut(s) 276, 288, 309, 420, 1123, 1385
TatI WGTACW 4 cut(s) 159, 639, 650, 1031
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 5 cut(s) 175, 572, 812, 936, 1377
Tru1I TTAA 3 cut(s) 1101, 1164, 1179
Tru9I TTAA 3 cut(s) 1101, 1164, 1179
TscAI CASTG 6 cut(s) 12, 382, 414, 546, 946, 1339
TseFI GTSAC 1 cut(s) 491
TseI GCWGC 1 cut(s) 743
Tsp45I GTSAC 1 cut(s) 491
TspDTI ATGAA 1 cut(s) 1312
TspRI CASTG 6 cut(s) 12, 382, 414, 546, 946, 1339
Vha464I CTTAAG 1 cut(s) 1100
VpaK11BI GGWCC 3 cut(s) 78, 386, 1304
XagI CCTNNNNNAGG 1 cut(s) 393
XapI RAATTY 1 cut(s) 1123
XceI RCATGY 1 cut(s) 1371
XspI CTAG 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.