Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006887

Physical Location & Seq

Genomic Coordinates Forward (+)

13051427 .. 13052531

Gene Structure 1105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g09890.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGTCTTCTTCTTCGCTGTTGCAGACTTCGATCTCGTCCTCTTCCTCCGCTTTCTTCGCCAACCACAACTTGACATTCAATTCCAGAGCTCGGAGTGTCTCGCTTCCAGCAAAACACGTTGGCATCTGCAAATGTGTCGCCACTCCGCAGGCAGAGAAGACCGAATACAAAACCCAGGTGTCCCGGAATGCCAACATAGCCAAACTTCAAGCTGGGTATCTCTTTCCAGAGGTTGCTAGAAGAAGAGCGGCGCACTTGAAGAAGTACCCTGATGCACAAGTGATTAGCCTTGGGATTGGTGACACCACTGAGCCCATTCCAGAAGTTATAACCTCTGTAATGGCAAAGGCATTCACTCTGGTGTTCTTTAATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008483 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009627 GO:0009719 GO:0009725 GO:0009735 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010285 GO:0014070 GO:0016740 GO:0016769 GO:0023052 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046677 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0098542 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00300 ko01100 ko01110 ko01130 ko01230 map00300 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

126

Amino Acids

13.63

Weight (kDa)

9.74

Isoelectric Point (pI)

58.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33680
fragaria_vesca	FvH4_2g02700 FvH4_2g02700
malus_domestica	MD00G1080600.v1.1 MD05G1111000.v1.1 MD10G1114500.v1.1
prunus_persica	Prupe.8G156000_v2.0.a1
pyrus_communis	pycom05g10690 pycom10g09890 pycom10g09900
rosa_chinensis	RchiOBHm_Chr6g0247121
rosa_laevigata	RLG00000015219 RLG00000030359 RLG00000030363
rosa_multiflora	Rmu_sc0004577.1_g000011 Rmu_sc0030830.1_g000004
rosa_roxburghii	Rroxscaffold_3G00276080 Rroxscaffold_7G00214330
rosa_rugosa	Rorug05G0522500 Rorug05G0522600
rosa_samantha	Rh6AG037800 Rh6BG032400 Rh6BG032700 Rh6CG033500 Rh6DG031200
rosa_wichuraiana	Rw6G003220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	329
AccBSI	CCGCTC	1 cut(s)	248
AciI	CCGC	3 cut(s)	48, 146, 248
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	90
AflIII	ACRYGT	1 cut(s)	115
AgsI	TTSAA	3 cut(s)	79, 209, 259
AjnI	CCWGG	1 cut(s)	174
AleI	CACNNNNGTG	1 cut(s)	359
AluBI	AGCT	2 cut(s)	89, 212
AluI	AGCT	2 cut(s)	89, 212
Alw21I	GWGCWC	1 cut(s)	91
Alw26I	GTCTC	1 cut(s)	103
AspLEI	GCGC	1 cut(s)	253
AsuC2I	CCSGG	1 cut(s)	184
AsuHPI	GGTGA	1 cut(s)	311
BanII	GRGCYC	2 cut(s)	91, 315
BarI	GAAGNNNNNNTAC	2 cut(s)	149, 181
BbsI	GAAGAC	1 cut(s)	164
Bbv12I	GWGCWC	1 cut(s)	91
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BciT130I	CCWGG	1 cut(s)	176
BcnI	CCSGG	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	103
BfaI	CTAG	1 cut(s)	237
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
Bme1390I	CCNGG	2 cut(s)	176, 184
BmrFI	CCNGG	2 cut(s)	176, 184
BmsI	GCATC	2 cut(s)	132, 262
BpiI	GAAGAC	1 cut(s)	164
BpuMI	CCSGG	1 cut(s)	184
BsaJI	CCNNGG	2 cut(s)	174, 289
Bsc4I	CCNNNNNNNGG	1 cut(s)	90
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	2 cut(s)	174, 289
BseLI	CCNNNNNNNGG	1 cut(s)	90
BseMII	CTCAG	1 cut(s)	300
BseYI	CCCAGC	1 cut(s)	212
BsiHKAI	GWGCWC	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	184
BslFI	GGGAC	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	90
BsmAI	GTCTC	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	166
BsmI	GAATGC	2 cut(s)	193, 350
Bsp1286I	GDGCHC	2 cut(s)	91, 315
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	3 cut(s)	48, 146, 248
BspCNI	CTCAG	1 cut(s)	301
BspQI	GCTCTTC	1 cut(s)	238
BsrBI	CCGCTC	1 cut(s)	248
BssECI	CCNNGG	2 cut(s)	174, 289
BssMI	GATC	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	289
Bst2UI	CCWGG	1 cut(s)	176
Bst6I	CTCTTC	2 cut(s)	46, 238
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	1 cut(s)	309
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	1 cut(s)	33
BstMAI	GTCTC	1 cut(s)	103
BstMBI	GATC	1 cut(s)	30
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 197
BstNI	CCWGG	1 cut(s)	176
BstSCI	CCNGG	2 cut(s)	174, 182
BstV2I	GAAGAC	1 cut(s)	164
BtsIMutI	CAGTG	1 cut(s)	306
Cac8I	GCNNGC	1 cut(s)	150
CfoI	GCGC	1 cut(s)	253
Csp6I	GTAC	1 cut(s)	265
CviJI	RGCY	5 cut(s)	89, 200, 212, 288, 313
CviKI_1	RGCY	5 cut(s)	89, 200, 212, 288, 313
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
Eam1104I	CTCTTC	2 cut(s)	46, 238
EarI	CTCTTC	2 cut(s)	46, 238
Ecl136II	GAGCTC	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	289
Eco24I	GRGCYC	2 cut(s)	91, 315
Eco53kI	GAGCTC	1 cut(s)	89
EcoICRI	GAGCTC	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	289
EcoT38I	GRGCYC	2 cut(s)	91, 315
ErhI	CCWWGG	1 cut(s)	289
FaiI	YATR	2 cut(s)	197, 329
FaqI	GGGAC	1 cut(s)	166
Fnu4HI	GCNGC	1 cut(s)	249
FriOI	GRGCYC	2 cut(s)	91, 315
Fsp4HI	GCNGC	1 cut(s)	249
FspBI	CTAG	1 cut(s)	237
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	1 cut(s)	249
GsaI	CCCAGC	1 cut(s)	216
HapII	CCGG	1 cut(s)	184
HhaI	GCGC	1 cut(s)	253
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HpaII	CCGG	1 cut(s)	184
HphI	GGTGA	1 cut(s)	311
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	3 cut(s)	84, 227, 320
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	3 cut(s)	22, 129, 275
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 197
HpyF3I	CTNAG	1 cut(s)	309
HpySE526I	ACGT	1 cut(s)	117
HspAI	GCGC	1 cut(s)	251
Kzo9I	GATC	1 cut(s)	30
LguI	GCTCTTC	1 cut(s)	238
LweI	GCATC	2 cut(s)	132, 262
MaeI	CTAG	1 cut(s)	237
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	1 cut(s)	32
MbiI	CCGCTC	1 cut(s)	248
MboI	GATC	1 cut(s)	30
MboII	GAAGA	7 cut(s)	3, 33, 46, 169, 252, 255, 271
MhlI	GDGCHC	2 cut(s)	91, 315
MluCI	AATT	2 cut(s)	79, 370
MnlI	CCTC	4 cut(s)	49, 55, 223, 343
MseI	TTAA	1 cut(s)	369
MslI	CAYNNNNRTG	1 cut(s)	359
MspI	CCGG	1 cut(s)	184
MspR9I	CCNGG	2 cut(s)	176, 184
Mva1269I	GAATGC	2 cut(s)	193, 350
MvaI	CCWGG	1 cut(s)	176
MwoI	GCNNNNNNNGC	2 cut(s)	56, 197
NciI	CCSGG	1 cut(s)	184
NdeII	GATC	1 cut(s)	30
NmuCI	GTSAC	1 cut(s)	299
OliI	CACNNNNGTG	1 cut(s)	359
PciSI	GCTCTTC	1 cut(s)	238
PctI	GAATGC	2 cut(s)	193, 350
PfoI	TCCNGGA	1 cut(s)	182
PkrI	GCNGC	1 cut(s)	250
PsiI	TTATAA	1 cut(s)	329
Psp124BI	GAGCTC	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	174
PspFI	CCCAGC	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	174
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
RseI	CAYNNNNRTG	1 cut(s)	359
SacI	GAGCTC	1 cut(s)	91
SapI	GCTCTTC	1 cut(s)	238
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	1 cut(s)	30
ScrFI	CCNGG	2 cut(s)	176, 184
SduI	GDGCHC	2 cut(s)	91, 315
SetI	ASST	6 cut(s)	91, 120, 180, 214, 234, 335
SfaNI	GCATC	2 cut(s)	132, 262
SmiMI	CAYNNNNRTG	1 cut(s)	359
Sse9I	AATT	2 cut(s)	79, 370
SsiI	CCGC	3 cut(s)	48, 146, 248
SspMI	CTAG	1 cut(s)	237
SstI	GAGCTC	1 cut(s)	91
StyD4I	CCNGG	2 cut(s)	174, 182
StyI	CCWWGG	1 cut(s)	289
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	1 cut(s)	29
TaqII	GACCGA	1 cut(s)	176
TasI	AATT	2 cut(s)	79, 370
TauI	GCSGC	1 cut(s)	251
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TscAI	CASTG	1 cut(s)	313
TseFI	GTSAC	1 cut(s)	299
Tsp45I	GTSAC	1 cut(s)	299
TspRI	CASTG	1 cut(s)	313
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.