Rmu_sc0030830.1_g000004

LL-diaminopimelate aminotransferase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0030830.1
Physical Location & Seq
Reverse (-)
11191 .. 14114
2924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0030830.1_g000004.1.cds

Sequence Viewer

Length: 1026 bp
atgggttttgggtgtttgggtctacggaggtgcacgaggacaggcaggcaggggagcgctggtcctggggatctgacgctggtggtggagcggcaggagtggtggggaagcgacagtgctgtttgcctcaaaatcgtctcggccgaaatgagagccgagggacttgtggttgaatcgccgaggaaggaaccctctcggcctttaggttctgatgcctctgttgcaaggacttcggtgcagcgggtgatatgggccgtgagggaggttggacaaggactgacgaggatcatcggcgtggtgtgttttgccggcggggcacgatttgccggcagcagccttggtggatcgcagtgctgccttggtggattgcgacgctggatccttgtggggagtggtggttgggccgggacccagtcttctgccggcttttggtcgtgcattttattaccagcctgtgctgaggttttcgggagatccttggatggcccgcccgatcgatttctattgtggtttaatcccatcctagttgcaattgagacatcatcatttagcaagtatgctggattcactggaattcgtttggggtggactgtggttccaaagcagttgcactattcggatggttttcaagtcgccaaggacttcaaccgcattgtttgtacttgcttcaatggtgcatccactattgcccaagctggtggtctggcttgtcttgaaccagagggtcttaaggctatgcacggggtgataaatttctacaaagaaaatactaatatcataatggagacatttaactcccttggctttaacgtttatggagggacgaatgctccatatgtgtgggtccacttccccggacaaagctcatgggatgtgtttgctgagattcttgagaagactcatgtggttaccacacctggaagtggctttggacctggtggtgaaggtttcatcaggattagtgcctttggtcacagggaaaatgtattagaagcatgcaagagattcaagcaattatacaagtga

Protein Analysis

341

Amino Acids

36.75

Weight (kDa)

8.84

Isoelectric Point (pI)

47.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 91
AccI GTMKAC 1 cut(s) 22
AciI CCGC 5 cut(s) 91, 241, 312, 488, 649
AclI AACGTT 1 cut(s) 810
AclWI GGATC 6 cut(s) 78, 293, 352, 373, 386, 468
AcoI YGGCCR 1 cut(s) 141
AcsI RAATTY 2 cut(s) 573, 751
AdeI CACNNNGTG 1 cut(s) 745
AfaI GTAC 1 cut(s) 661
AfeI AGCGCT 1 cut(s) 58
AfiI CCNNNNNNNGG 2 cut(s) 429, 923
AflII CTTAAG 1 cut(s) 728
AgsI TTSAA 6 cut(s) 173, 629, 646, 670, 716, 1009
AjnI CCWGG 3 cut(s) 64, 916, 934
AluBI AGCT 2 cut(s) 695, 864
AluI AGCT 2 cut(s) 695, 864
Alw21I GWGCWC 1 cut(s) 35
Alw26I GTCTC 3 cut(s) 142, 530, 779
Alw44I GTGCAC 1 cut(s) 31
AlwI GGATC 6 cut(s) 78, 293, 352, 373, 386, 468
Aor51HI AGCGCT 1 cut(s) 58
AoxI GGCC 5 cut(s) 141, 197, 252, 402, 484
ApaLI GTGCAC 1 cut(s) 31
ApeKI GCWGC 4 cut(s) 238, 330, 333, 354
ApoI RAATTY 2 cut(s) 573, 751
AspLEI GCGC 1 cut(s) 59
AspS9I GGNCC 7 cut(s) 62, 252, 402, 408, 485, 844, 932
AsuC2I CCSGG 2 cut(s) 406, 855
AsuHPI GGTGA 3 cut(s) 256, 757, 953
AvaII GGWCC 4 cut(s) 62, 408, 844, 932
BaeGI GKGCMC 2 cut(s) 35, 319
BamHI GGATCC 1 cut(s) 378
BauI CACGAG 1 cut(s) 34
BbsI GAAGAC 2 cut(s) 408, 902
Bbv12I GWGCWC 1 cut(s) 35
BbvCI CCTCAGC 1 cut(s) 459
BbvI GCAGC 4 cut(s) 250, 341, 342, 345
BccI CCATC 3 cut(s) 476, 527, 614
BceAI ACGGC 1 cut(s) 239
BcgI CGANNNNNNTGC 2 cut(s) 213, 247
BciT130I CCWGG 3 cut(s) 66, 918, 936
BcnI CCSGG 2 cut(s) 406, 855
BcoDI GTCTC 3 cut(s) 142, 530, 779
BfaI CTAG 1 cut(s) 524
BfoI RGCGCY 1 cut(s) 60
BfrI CTTAAG 1 cut(s) 728
BglI GCCNNNNNGGC 1 cut(s) 314
BisI GCNGC 5 cut(s) 92, 239, 331, 334, 355
BlsI GCNGC 5 cut(s) 93, 240, 332, 335, 356
Bme1390I CCNGG 5 cut(s) 66, 406, 855, 918, 936
Bme18I GGWCC 4 cut(s) 62, 408, 844, 932
BmgT120I GGNCC 7 cut(s) 62, 252, 402, 408, 485, 844, 932
BmiI GGNNCC 6 cut(s) 189, 380, 409, 410, 597, 845
BmrFI CCNGG 5 cut(s) 66, 406, 855, 918, 936
BmrI ACTGGG 1 cut(s) 406
BmsI GCATC 2 cut(s) 202, 686
BmuI ACTGGG 1 cut(s) 406
BpiI GAAGAC 2 cut(s) 408, 902
Bpu10I CCTNAGC 1 cut(s) 459
BpuEI CTTGAG 1 cut(s) 911
BpuMI CCSGG 2 cut(s) 406, 855
Bsa29I ATCGAT 1 cut(s) 496
BsaJI CCNNGG 9 cut(s) 65, 156, 179, 337, 358, 477, 636, 799, 853
BsaXI ACNNNNNCTCC 6 cut(s) 46, 76, 382, 412, 814, 844
Bsc4I CCNNNNNNNGG 2 cut(s) 429, 923
Bse118I RCCGGY 3 cut(s) 308, 326, 422
Bse1I ACTGG 2 cut(s) 412, 574
BseBI CCWGG 3 cut(s) 66, 918, 936
BseCI ATCGAT 1 cut(s) 496
BseDI CCNNGG 9 cut(s) 65, 156, 179, 337, 358, 477, 636, 799, 853
BseGI GGATG 5 cut(s) 487, 519, 625, 677, 877
BseLI CCNNNNNNNGG 2 cut(s) 429, 923
BseMII CTCAG 2 cut(s) 450, 873
BseNI ACTGG 2 cut(s) 412, 574
BseSI GKGCMC 2 cut(s) 35, 319
BseX3I CGGCCG 1 cut(s) 141
BseXI GCAGC 4 cut(s) 250, 341, 342, 345
BsgI GTGCAG 1 cut(s) 257
Bsh1285I CGRYCG 2 cut(s) 144, 496
BshFI GGCC 5 cut(s) 143, 199, 254, 404, 486
BshVI ATCGAT 1 cut(s) 496
BsiEI CGRYCG 2 cut(s) 144, 496
BsiHKAI GWGCWC 1 cut(s) 35
BsiSI CCGG 5 cut(s) 309, 327, 405, 423, 855
BslFI GGGAC 3 cut(s) 174, 421, 835
BslI CCNNNNNNNGG 2 cut(s) 429, 923
BsmAI GTCTC 3 cut(s) 142, 530, 779
BsmBI CGTCTC 1 cut(s) 142
BsmFI GGGAC 3 cut(s) 174, 421, 835
BsmI GAATGC 1 cut(s) 832
BsnI GGCC 5 cut(s) 143, 199, 254, 404, 486
Bsp1286I GDGCHC 2 cut(s) 35, 319
Bsp143I GATC 6 cut(s) 70, 285, 344, 378, 473, 493
BspACI CCGC 5 cut(s) 91, 241, 312, 488, 649
BspANI GGCC 5 cut(s) 143, 199, 254, 404, 486
BspCNI CTCAG 2 cut(s) 451, 874
BspDI ATCGAT 1 cut(s) 496
BspLI GGNNCC 6 cut(s) 189, 380, 409, 410, 597, 845
BspPI GGATC 6 cut(s) 78, 293, 352, 373, 386, 468
BspTI CTTAAG 1 cut(s) 728
BsrBI CCGCTC 1 cut(s) 91
BsrFI RCCGGY 3 cut(s) 308, 326, 422
BsrI ACTGG 2 cut(s) 412, 574
BssAI RCCGGY 3 cut(s) 308, 326, 422
BssECI CCNNGG 9 cut(s) 65, 156, 179, 337, 358, 477, 636, 799, 853
BssMI GATC 6 cut(s) 70, 285, 344, 378, 473, 493
BssSI CACGAG 1 cut(s) 34
BssT1I CCWWGG 5 cut(s) 337, 358, 477, 636, 799
Bst2BI CACGAG 1 cut(s) 34
Bst2UI CCWGG 3 cut(s) 66, 918, 936
Bst4CI ACNGT 2 cut(s) 116, 592
BstAFI CTTAAG 1 cut(s) 728
BstAPI GCANNNNNTGC 1 cut(s) 323
BstC8I GCNNGC 6 cut(s) 47, 310, 328, 424, 488, 997
BstDEI CTNAG 2 cut(s) 459, 882
BstEII GGTNACC 1 cut(s) 907
BstF5I GGATG 5 cut(s) 487, 519, 625, 677, 877
BstH2I RGCGCY 1 cut(s) 60
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 6 cut(s) 73, 288, 347, 381, 476, 496
BstMAI GTCTC 3 cut(s) 142, 530, 779
BstMBI GATC 6 cut(s) 70, 285, 344, 378, 473, 493
BstMCI CGRYCG 2 cut(s) 144, 496
BstMWI GCNNNNNNNGC 3 cut(s) 221, 314, 323
BstNI CCWGG 3 cut(s) 66, 918, 936
BstNSI RCATGY 1 cut(s) 999
BstPI GGTNACC 1 cut(s) 907
BstSCI CCNGG 5 cut(s) 64, 404, 853, 916, 934
BstSLI GKGCMC 2 cut(s) 35, 319
BstV1I GCAGC 4 cut(s) 250, 341, 342, 345
BstV2I GAAGAC 2 cut(s) 408, 902
BstX2I RGATCY 3 cut(s) 70, 378, 473
BstXI CCANNNNNNTGG 2 cut(s) 698, 840
BstYI RGATCY 3 cut(s) 70, 378, 473
BstZI CGGCCG 1 cut(s) 141
Bsu15I ATCGAT 1 cut(s) 496
BsuRI GGCC 5 cut(s) 143, 199, 254, 404, 486
BsuTUI ATCGAT 1 cut(s) 496
BtsCI GGATG 5 cut(s) 487, 519, 625, 677, 877
BtsI GCAGTG 1 cut(s) 356
BtsIMutI CAGTG 3 cut(s) 121, 356, 567
Cac8I GCNNGC 6 cut(s) 47, 310, 328, 424, 488, 997
CfoI GCGC 1 cut(s) 59
Cfr10I RCCGGY 3 cut(s) 308, 326, 422
Cfr13I GGNCC 7 cut(s) 62, 252, 402, 408, 485, 844, 932
ClaI ATCGAT 1 cut(s) 496
CseI GACGC 2 cut(s) 85, 381
CsiI ACCWGGT 1 cut(s) 934
Csp6I GTAC 1 cut(s) 660
CviAII CATG 3 cut(s) 867, 902, 996
CviQI GTAC 1 cut(s) 660
DdeI CTNAG 2 cut(s) 459, 882
DpnI GATC 6 cut(s) 72, 287, 346, 380, 475, 495
DpnII GATC 6 cut(s) 70, 285, 344, 378, 473, 493
DraIII CACNNNGTG 1 cut(s) 745
EaeI YGGCCR 1 cut(s) 141
EagI CGGCCG 1 cut(s) 141
EclXI CGGCCG 1 cut(s) 141
Eco130I CCWWGG 5 cut(s) 337, 358, 477, 636, 799
Eco47I GGWCC 4 cut(s) 62, 408, 844, 932
Eco47III AGCGCT 1 cut(s) 58
Eco52I CGGCCG 1 cut(s) 141
Eco91I GGTNACC 1 cut(s) 907
EcoO109I RGGNCCY 1 cut(s) 408
EcoO65I GGTNACC 1 cut(s) 907
EcoRI GAATTC 1 cut(s) 573
EcoRII CCWGG 3 cut(s) 64, 916, 934
EcoT14I CCWWGG 5 cut(s) 337, 358, 477, 636, 799
ErhI CCWWGG 5 cut(s) 337, 358, 477, 636, 799
Esp3I CGTCTC 1 cut(s) 142
FaeI CATG 3 cut(s) 870, 905, 999
FaqI GGGAC 3 cut(s) 174, 421, 835
FatI CATG 3 cut(s) 866, 901, 995
FauI CCCGC 3 cut(s) 234, 305, 495
FauNDI CATATG 1 cut(s) 835
FblI GTMKAC 1 cut(s) 22
Fnu4HI GCNGC 5 cut(s) 92, 239, 331, 334, 355
FokI GGATG 5 cut(s) 494, 506, 632, 664, 884
Fsp4HI GCNGC 5 cut(s) 92, 239, 331, 334, 355
FspBI CTAG 1 cut(s) 524
GlaI GCGC 1 cut(s) 58
GluI GCNGC 5 cut(s) 92, 239, 331, 334, 355
HaeII RGCGCY 1 cut(s) 60
HaeIII GGCC 5 cut(s) 143, 199, 254, 404, 486
HapII CCGG 5 cut(s) 309, 327, 405, 423, 855
HgaI GACGC 2 cut(s) 85, 381
HhaI GCGC 1 cut(s) 59
Hin1II CATG 3 cut(s) 870, 905, 999
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HinfI GANTC 5 cut(s) 173, 564, 886, 898, 1005
HpaII CCGG 5 cut(s) 309, 327, 405, 423, 855
HphI GGTGA 3 cut(s) 256, 757, 953
Hpy166II GTNNAC 4 cut(s) 23, 33, 588, 847
Hpy188I TCNGA 3 cut(s) 75, 211, 619
Hpy188III TCNNGA 4 cut(s) 469, 713, 890, 955
Hpy8I GTNNAC 4 cut(s) 23, 33, 588, 847
Hpy99I CGWCG 1 cut(s) 375
HpyAV CCTTC 2 cut(s) 178, 938
HpyCH4III ACNGT 2 cut(s) 116, 592
HpyCH4IV ACGT 1 cut(s) 810
HpyCH4V TGCA 9 cut(s) 33, 224, 238, 438, 530, 610, 677, 739, 999
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 314, 323
HpyF3I CTNAG 2 cut(s) 459, 882
HpySE526I ACGT 1 cut(s) 810
Hsp92II CATG 3 cut(s) 870, 905, 999
HspAI GCGC 1 cut(s) 57
KflI GGGWCCC 1 cut(s) 408
KroI GCCGGC 3 cut(s) 308, 326, 422
KroNI GCCGGC 3 cut(s) 310, 328, 424
Kzo9I GATC 6 cut(s) 70, 285, 344, 378, 473, 493
LmnI GCTCC 3 cut(s) 54, 88, 835
Lsp1109I GCAGC 4 cut(s) 250, 341, 342, 345
LweI GCATC 2 cut(s) 202, 686
MabI ACCWGGT 1 cut(s) 934
MaeI CTAG 1 cut(s) 524
MaeII ACGT 1 cut(s) 810
MaeIII GTNAC 2 cut(s) 907, 971
MalI GATC 6 cut(s) 72, 287, 346, 380, 475, 495
MbiI CCGCTC 1 cut(s) 91
MboI GATC 6 cut(s) 70, 285, 344, 378, 473, 493
MboII GAAGA 2 cut(s) 408, 907
MfeI CAATTG 1 cut(s) 531
MflI RGATCY 3 cut(s) 70, 378, 473
MhlI GDGCHC 2 cut(s) 35, 319
MluCI AATT 4 cut(s) 531, 573, 751, 1013
MlyI GAGTC 1 cut(s) 892
MmeI TCCRAC 1 cut(s) 247
MroNI GCCGGC 3 cut(s) 308, 326, 422
MseI TTAA 4 cut(s) 513, 729, 792, 807
MslI CAYNNNNRTG 2 cut(s) 293, 838
MspA1I CMGCKG 1 cut(s) 241
MspCI CTTAAG 1 cut(s) 728
MspI CCGG 5 cut(s) 309, 327, 405, 423, 855
MspR9I CCNGG 5 cut(s) 66, 406, 855, 918, 936
MunI CAATTG 1 cut(s) 531
Mva1269I GAATGC 1 cut(s) 832
MvaI CCWGG 3 cut(s) 66, 918, 936
MwoI GCNNNNNNNGC 3 cut(s) 221, 314, 323
NaeI GCCGGC 3 cut(s) 310, 328, 424
NciI CCSGG 2 cut(s) 406, 855
NdeI CATATG 1 cut(s) 835
NdeII GATC 6 cut(s) 70, 285, 344, 378, 473, 493
NgoMIV GCCGGC 3 cut(s) 308, 326, 422
NlaIII CATG 3 cut(s) 870, 905, 999
NlaIV GGNNCC 6 cut(s) 189, 380, 409, 410, 597, 845
NmeAIII GCCGAG 4 cut(s) 119, 175, 181, 204
NmuCI GTSAC 1 cut(s) 971
NspI RCATGY 1 cut(s) 999
PaeI GCATGC 1 cut(s) 999
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PctI GAATGC 1 cut(s) 832
PdiI GCCGGC 3 cut(s) 310, 328, 424
PfeI GAWTC 4 cut(s) 173, 564, 886, 1005
PflFI GACNNNGTC 1 cut(s) 412
PkrI GCNGC 5 cut(s) 93, 240, 332, 335, 356
Ple19I CGATCG 1 cut(s) 496
PleI GAGTC 1 cut(s) 892
PpsI GAGTC 1 cut(s) 892
PpuMI RGGWCCY 1 cut(s) 408
Psp1406I AACGTT 1 cut(s) 810
Psp5II RGGWCCY 1 cut(s) 408
Psp6I CCWGG 3 cut(s) 64, 916, 934
PspEI GGTNACC 1 cut(s) 907
PspGI CCWGG 3 cut(s) 64, 916, 934
PspN4I GGNNCC 6 cut(s) 189, 380, 409, 410, 597, 845
PspPI GGNCC 7 cut(s) 62, 252, 402, 408, 485, 844, 932
PspPPI RGGWCCY 1 cut(s) 408
PsuI RGATCY 3 cut(s) 70, 378, 473
PsyI GACNNNGTC 1 cut(s) 412
PvuI CGATCG 1 cut(s) 496
RsaI GTAC 1 cut(s) 661
RsaNI GTAC 1 cut(s) 660
RseI CAYNNNNRTG 2 cut(s) 293, 838
SaqAI TTAA 4 cut(s) 513, 729, 792, 807
SatI GCNGC 5 cut(s) 92, 239, 331, 334, 355
Sau3AI GATC 6 cut(s) 70, 285, 344, 378, 473, 493
Sau96I GGNCC 7 cut(s) 62, 252, 402, 408, 485, 844, 932
SchI GAGTC 1 cut(s) 892
ScrFI CCNGG 5 cut(s) 66, 406, 855, 918, 936
SduI GDGCHC 2 cut(s) 35, 319
SexAI ACCWGGT 1 cut(s) 934
SfaNI GCATC 2 cut(s) 202, 686
SinI GGWCC 4 cut(s) 62, 408, 844, 932
SmiMI CAYNNNNRTG 2 cut(s) 293, 838
SmlI CTYRAG 2 cut(s) 728, 890
SmoI CTYRAG 2 cut(s) 728, 890
SphI GCATGC 1 cut(s) 999
Sse9I AATT 4 cut(s) 531, 573, 751, 1013
SsiI CCGC 5 cut(s) 91, 241, 312, 488, 649
SspMI CTAG 1 cut(s) 524
StyD4I CCNGG 5 cut(s) 64, 404, 853, 916, 934
StyI CCWWGG 5 cut(s) 337, 358, 477, 636, 799
TaaI ACNGT 2 cut(s) 116, 592
TaiI ACGT 1 cut(s) 813
TaqI TCGA 1 cut(s) 496
TasI AATT 4 cut(s) 531, 573, 751, 1013
TatI WGTACW 1 cut(s) 659
TauI GCSGC 1 cut(s) 94
TfiI GAWTC 4 cut(s) 173, 564, 886, 1005
Tru1I TTAA 4 cut(s) 513, 729, 792, 807
Tru9I TTAA 4 cut(s) 513, 729, 792, 807
TscAI CASTG 3 cut(s) 121, 356, 574
TseFI GTSAC 1 cut(s) 971
TseI GCWGC 4 cut(s) 238, 330, 333, 354
Tsp45I GTSAC 1 cut(s) 971
TspDTI ATGAA 1 cut(s) 940
TspGWI ACGGA 1 cut(s) 40
TspRI CASTG 3 cut(s) 121, 356, 574
Tth111I GACNNNGTC 1 cut(s) 412
Vha464I CTTAAG 1 cut(s) 728
VneI GTGCAC 1 cut(s) 31
VpaK11BI GGWCC 4 cut(s) 62, 408, 844, 932
XapI RAATTY 2 cut(s) 573, 751
XceI RCATGY 1 cut(s) 999
XmiI GTMKAC 1 cut(s) 22
XspI CTAG 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.