Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0006887

Physical Location & Seq

Genomic Coordinates Forward (+)

16074709 .. 16075772

Gene Structure 1064 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1080600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTATATGTCAGATGACAATCCACGGTCAATCTTTGAAATCCCTGGAGCTAAAGAGATTGCAATTGAGACATCATCGTTCAGTAAGTATGCAGGATTCACAGGAGTTCATGGATTCCCTGTTGCCAAGGACTTCAACCGCATTGTTTGTACTTGCTTCAATGGTGCATCCAACATATCCCAAGCTGGCGGTCTTGCTTGCCTTTCGCCAGAAGGCCTTAAGGCTATGCGAGAGGTGATTGGTTACTACAAGAAAACTGCTGAAATAATTGTGGACACGTTCGAGTCTCTTGGTTTTAAGGTGTATGGAGGGAAGAATGCACCCTATGTATGGGTGCACTTCCCTGGCCGAAGCTCATGGGATGTATTCAGTGAGATTCTTGAGAAGACTCATGTGGTCACCATGCCTGGAAGTGGTTTCGGACCTGGGGGTGAAGGTTTCGTCAGGGTTAGCGCGTTTGGTCACCGGAAGAATGTATTAGAAGCTTGTGAAAGATTCAAGCAATTATACAATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008483 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009627 GO:0009719 GO:0009725 GO:0009735 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010285 GO:0014070 GO:0016740 GO:0016769 GO:0023052 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046677 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0098542 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00300 ko01100 ko01110 ko01130 ko01230 map00300 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

173

Amino Acids

18.88

Weight (kDa)

7.67

Isoelectric Point (pI)

51.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	21 - 166	6.1e-10	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33680
fragaria_vesca	FvH4_2g02700 FvH4_2g02700
malus_domestica	MD00G1080600.v1.1 MD05G1111000.v1.1 MD10G1114500.v1.1
prunus_persica	Prupe.8G156000_v2.0.a1
pyrus_communis	pycom05g10690 pycom10g09890 pycom10g09900
rosa_chinensis	RchiOBHm_Chr6g0247121
rosa_laevigata	RLG00000015219 RLG00000030359 RLG00000030363
rosa_multiflora	Rmu_sc0004577.1_g000011 Rmu_sc0030830.1_g000004
rosa_roxburghii	Rroxscaffold_3G00276080 Rroxscaffold_7G00214330
rosa_rugosa	Rorug05G0522500 Rorug05G0522600
rosa_samantha	Rh6AG037800 Rh6BG032400 Rh6BG032700 Rh6CG033500 Rh6DG031200
rosa_wichuraiana	Rw6G003220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	455
AciI	CCGC	2 cut(s)	139, 189
AcoI	YGGCCR	1 cut(s)	346
AfaI	GTAC	1 cut(s)	151
AfiI	CCNNNNNNNGG	2 cut(s)	330, 413
AflII	CTTAAG	1 cut(s)	218
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	4 cut(s)	38, 136, 160, 499
AjnI	CCWGG	4 cut(s)	43, 343, 406, 424
AluBI	AGCT	4 cut(s)	50, 185, 354, 485
AluI	AGCT	4 cut(s)	50, 185, 354, 485
Alw21I	GWGCWC	1 cut(s)	339
Alw26I	GTCTC	2 cut(s)	62, 291
Alw44I	GTGCAC	1 cut(s)	335
AoxI	GGCC	2 cut(s)	214, 346
ApaLI	GTGCAC	1 cut(s)	335
AspLEI	GCGC	1 cut(s)	455
AspS9I	GGNCC	1 cut(s)	422
AsuHPI	GGTGA	4 cut(s)	247, 391, 443, 455
AvaII	GGWCC	1 cut(s)	422
BaeGI	GKGCMC	1 cut(s)	339
BbsI	GAAGAC	1 cut(s)	392
Bbv12I	GWGCWC	1 cut(s)	339
BciT130I	CCWGG	4 cut(s)	45, 345, 408, 426
BcoDI	GTCTC	2 cut(s)	62, 291
BfrI	CTTAAG	1 cut(s)	218
Bme1390I	CCNGG	4 cut(s)	45, 345, 408, 426
Bme18I	GGWCC	1 cut(s)	422
BmgT120I	GGNCC	1 cut(s)	422
BmrFI	CCNGG	4 cut(s)	45, 345, 408, 426
BmsI	GCATC	1 cut(s)	176
BpiI	GAAGAC	1 cut(s)	392
BpmI	CTGGAG	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	401
BsaBI	GATNNNNATC	1 cut(s)	18
BsaJI	CCNNGG	5 cut(s)	23, 43, 126, 343, 425
BsaWI	WCCGGW	1 cut(s)	465
Bsc4I	CCNNNNNNNGG	2 cut(s)	330, 413
Bse8I	GATNNNNATC	1 cut(s)	18
BseBI	CCWGG	4 cut(s)	45, 345, 408, 426
BseDI	CCNNGG	5 cut(s)	23, 43, 126, 343, 425
BseGI	GGATG	2 cut(s)	167, 367
BseJI	GATNNNNATC	1 cut(s)	18
BseLI	CCNNNNNNNGG	2 cut(s)	330, 413
BseSI	GKGCMC	1 cut(s)	339
Bsh1236I	CGCG	1 cut(s)	455
BshFI	GGCC	2 cut(s)	216, 348
BsiHKAI	GWGCWC	1 cut(s)	339
BsiSI	CCGG	1 cut(s)	466
BslI	CCNNNNNNNGG	2 cut(s)	330, 413
BsmAI	GTCTC	2 cut(s)	62, 291
BsmI	GAATGC	1 cut(s)	322
BsnI	GGCC	2 cut(s)	216, 348
Bsp1286I	GDGCHC	1 cut(s)	339
BspACI	CCGC	2 cut(s)	139, 189
BspANI	GGCC	2 cut(s)	216, 348
BspFNI	CGCG	1 cut(s)	455
BspTI	CTTAAG	1 cut(s)	218
BssECI	CCNNGG	5 cut(s)	23, 43, 126, 343, 425
BssT1I	CCWWGG	1 cut(s)	126
Bst2UI	CCWGG	4 cut(s)	45, 345, 408, 426
Bst4CI	ACNGT	1 cut(s)	27
BstAFI	CTTAAG	1 cut(s)	218
BstC8I	GCNNGC	2 cut(s)	187, 199
BstDSI	CCRYGG	1 cut(s)	23
BstEII	GGTNACC	2 cut(s)	397, 461
BstF5I	GGATG	2 cut(s)	167, 367
BstFNI	CGCG	1 cut(s)	455
BstHHI	GCGC	1 cut(s)	455
BstMAI	GTCTC	2 cut(s)	62, 291
BstNI	CCWGG	4 cut(s)	45, 345, 408, 426
BstPI	GGTNACC	2 cut(s)	397, 461
BstSCI	CCNGG	4 cut(s)	43, 343, 406, 424
BstSLI	GKGCMC	1 cut(s)	339
BstUI	CGCG	1 cut(s)	455
BstV2I	GAAGAC	1 cut(s)	392
BsuRI	GGCC	2 cut(s)	216, 348
BtgI	CCRYGG	1 cut(s)	23
BtsCI	GGATG	2 cut(s)	167, 367
BtsIMutI	CAGTG	1 cut(s)	376
Cac8I	GCNNGC	2 cut(s)	187, 199
CfoI	GCGC	1 cut(s)	455
Cfr13I	GGNCC	1 cut(s)	422
Csp6I	GTAC	1 cut(s)	150
CviAII	CATG	4 cut(s)	110, 357, 392, 403
CviJI	RGCY	7 cut(s)	50, 185, 216, 224, 348, 354, 485
CviKI_1	RGCY	7 cut(s)	50, 185, 216, 224, 348, 354, 485
CviQI	GTAC	1 cut(s)	150
EaeI	YGGCCR	1 cut(s)	346
Eco130I	CCWWGG	1 cut(s)	126
Eco147I	AGGCCT	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	422
Eco91I	GGTNACC	2 cut(s)	397, 461
EcoO65I	GGTNACC	2 cut(s)	397, 461
EcoRII	CCWGG	4 cut(s)	43, 343, 406, 424
EcoT14I	CCWWGG	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	4 cut(s)	113, 360, 395, 406
FatI	CATG	4 cut(s)	109, 356, 391, 402
FokI	GGATG	2 cut(s)	154, 374
GlaI	GCGC	1 cut(s)	454
GsuI	CTGGAG	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	216, 348
HapII	CCGG	1 cut(s)	466
HhaI	GCGC	1 cut(s)	455
Hin1II	CATG	4 cut(s)	113, 360, 395, 406
Hin6I	GCGC	1 cut(s)	453
HinP1I	GCGC	1 cut(s)	453
HindIII	AAGCTT	1 cut(s)	483
HinfI	GANTC	6 cut(s)	96, 114, 284, 376, 388, 495
HpaII	CCGG	1 cut(s)	466
HphI	GGTGA	4 cut(s)	247, 391, 443, 455
Hpy166II	GTNNAC	2 cut(s)	274, 337
Hpy188I	TCNGA	2 cut(s)	13, 422
Hpy188III	TCNNGA	1 cut(s)	380
Hpy8I	GTNNAC	2 cut(s)	274, 337
HpyAV	CCTTC	2 cut(s)	206, 428
HpyCH4III	ACNGT	1 cut(s)	27
HpyCH4IV	ACGT	1 cut(s)	278
HpyCH4V	TGCA	5 cut(s)	62, 92, 167, 320, 337
HpySE526I	ACGT	1 cut(s)	278
Hsp92II	CATG	4 cut(s)	113, 360, 395, 406
HspAI	GCGC	1 cut(s)	453
LmnI	GCTCC	1 cut(s)	47
LweI	GCATC	1 cut(s)	176
MaeII	ACGT	1 cut(s)	278
MaeIII	GTNAC	3 cut(s)	242, 397, 461
MboII	GAAGA	3 cut(s)	325, 397, 481
MfeI	CAATTG	1 cut(s)	63
MhlI	GDGCHC	1 cut(s)	339
MluCI	AATT	3 cut(s)	63, 267, 503
MlyI	GAGTC	2 cut(s)	293, 382
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	2 cut(s)	226, 302
MseI	TTAA	2 cut(s)	219, 297
MspCI	CTTAAG	1 cut(s)	218
MspI	CCGG	1 cut(s)	466
MspR9I	CCNGG	4 cut(s)	45, 345, 408, 426
MunI	CAATTG	1 cut(s)	63
Mva1269I	GAATGC	1 cut(s)	322
MvaI	CCWGG	4 cut(s)	45, 345, 408, 426
MvnI	CGCG	1 cut(s)	455
NlaIII	CATG	4 cut(s)	113, 360, 395, 406
NmuCI	GTSAC	2 cut(s)	397, 461
PceI	AGGCCT	1 cut(s)	216
PctI	GAATGC	1 cut(s)	322
PfeI	GAWTC	4 cut(s)	96, 114, 376, 495
PleI	GAGTC	2 cut(s)	292, 382
PpsI	GAGTC	2 cut(s)	292, 382
Psp6I	CCWGG	4 cut(s)	43, 343, 406, 424
PspEI	GGTNACC	2 cut(s)	397, 461
PspGI	CCWGG	4 cut(s)	43, 343, 406, 424
PspPI	GGNCC	1 cut(s)	422
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	219, 297
Sau96I	GGNCC	1 cut(s)	422
SchI	GAGTC	2 cut(s)	293, 382
ScrFI	CCNGG	4 cut(s)	45, 345, 408, 426
SduI	GDGCHC	1 cut(s)	339
SetI	ASST	9 cut(s)	52, 187, 237, 281, 303, 356, 427, 439, 487
SfaNI	GCATC	1 cut(s)	176
SinI	GGWCC	1 cut(s)	422
SmlI	CTYRAG	2 cut(s)	218, 380
SmoI	CTYRAG	2 cut(s)	218, 380
Sse9I	AATT	3 cut(s)	63, 267, 503
SseBI	AGGCCT	1 cut(s)	216
SsiI	CCGC	2 cut(s)	139, 189
SspI	AATATT	1 cut(s)	514
StuI	AGGCCT	1 cut(s)	216
StyD4I	CCNGG	4 cut(s)	43, 343, 406, 424
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	27
TaiI	ACGT	1 cut(s)	281
TaqI	TCGA	1 cut(s)	282
TasI	AATT	3 cut(s)	63, 267, 503
TatI	WGTACW	1 cut(s)	149
TfiI	GAWTC	4 cut(s)	96, 114, 376, 495
Tru1I	TTAA	2 cut(s)	219, 297
Tru9I	TTAA	2 cut(s)	219, 297
TscAI	CASTG	1 cut(s)	376
TseFI	GTSAC	2 cut(s)	397, 461
Tsp45I	GTSAC	2 cut(s)	397, 461
TspDTI	ATGAA	1 cut(s)	98
TspRI	CASTG	1 cut(s)	376
Vha464I	CTTAAG	1 cut(s)	218
VneI	GTGCAC	1 cut(s)	335
VpaK11BI	GGWCC	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.