MD10G1114500.v1.1

LL-diaminopimelate aminotransferase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
18752792 .. 18756782
3991 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1114500.v1.1.491

Sequence Viewer

Length: 1389 bp
ATGTCTTCTTCTTCGCTGTTGCAGACTTCGATCTCGTCCTCTTCCTCCGCTTTCTTCGCCAACCACAACTTCACATTCAATTCCAGAGCTCGGAAGGTCTCGCTTCCAGCAAAACACGTTGGCATCTGCAAATGCGTCGCCACTCCGCAGGCAGAGAAGACCGAATACAAAACCCAGGTGTCCCGGAATGCTAACATAGCCAAACTTCAAGCTGGGTATCTCTTTCCAGAGGTTGCTAGAAGAAGAGTGGCGCACTTGAAGAAGTACCCTGATGCACAAGTGATTAGCCTTGGGATTGGTGACACCACTGAGCCCATTCCAGAAGTTATAACCTCTGCAATGGCAAAGAGAGCACATGCTTTGTCTACCCTAGAGGGTTACAGTGGTTATGGACCTGAACAAGGTGAAAAGCCACTAAGAGCTGCAATTGCTTCTGCATTTTATGACAACCTTGGCATAGAGGAAGATGACATCTTTGTTTCTGATGGTGCAAAATGTGACATATCCCGCCTTCAGGTTGTTTTTGGGTCTAATGTCACAATAGCAGTGCAAGATCCATCTTATCCGGCTTATGTAGACTCAAGTGTTATTATGGGCCAGACTGGACAGTATCAGAAAGATGTTGAGAAGTTCGGAAATATTGAGTACATGAGGTGTACTCCTGAGAATGGATTCTTTCCTGATTTACGCACTGTTTCTCGAACAGATATCATATTTTTCTGCTCACCAAACAACCCTACTGGTTCTGCTGCAACAAGGGAGCAACTGACACAACTGGTACAGTTTGCTAAGGATAATGGGTCAATCATAGTATACGATTCAGCATACGCCCTGTATATGTCAGATGACAAACCTCGCTCAATCTTTGAAATCCCTGGAGCCAAAGAGGTTGCACTTGAGACATCATCGTTCAGTAAGTATGCTGGATTCACAGGAGTTCGTTTGGGGTGGACTGTTGTTCCAAAGCAGTTGCTCTTTTCAGATGGATTCCTTGTTGCCAAGGACTTCAACCGCATCGTTAGTACTTGCTTTAATGGTGCATCCAATATATCACAAGCTGGTGGTCTTGCTTGCCTTTCACCAGAAGGCCTTAAGGCCATGCGCGAGGTGATTGGTTTCTACAAAGAAAACACAGAAATAATAGTGGAGACATTTGAATCTCTTGGCTTTAAGGTGTACGGAGGGAAGAACGCACCCTATGTGTGGGTGCACTTCCCTGGCCGAAGCTCATGGGATGTATTCAGCGAGATTCTTGAGAAGACTCATGTGGTCACCACACCTGGGAGTGGTTTTGGATTTGGGGGTGAAGGTTTCGTCAGGGTTAGTGCGTTTGGCCACAGGAGTAATGTATTAGAAGCCTGCAAAAGATTCAAGCAATTATACAAGTAA

Protein Analysis

463

Amino Acids

50.59

Weight (kDa)

8.0

Isoelectric Point (pI)

48.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 93 - 457 1.3e-39 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 329
AccI GTMKAC 3 cut(s) 365, 576, 813
AccII CGCG 1 cut(s) 1104
AciI CCGC 4 cut(s) 48, 146, 508, 1012
AclWI GGATC 1 cut(s) 548
AcoI YGGCCR 2 cut(s) 1219, 1333
AcuI CTGAAG 1 cut(s) 497
AfaI GTAC 6 cut(s) 266, 647, 658, 780, 1024, 1178
AfiI CCNNNNNNNGG 7 cut(s) 90, 401, 514, 668, 1203, 1281, 1286
AflII CTTAAG 1 cut(s) 1091
AflIII ACRYGT 1 cut(s) 115
AgsI TTSAA 7 cut(s) 79, 209, 259, 869, 1009, 1157, 1372
AjnI CCWGG 4 cut(s) 174, 874, 1216, 1279
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
AluBI AGCT 5 cut(s) 89, 212, 422, 1058, 1227
AluI AGCT 5 cut(s) 89, 212, 422, 1058, 1227
Alw21I GWGCWC 3 cut(s) 91, 355, 1212
Alw26I GTCTC 3 cut(s) 103, 893, 1142
Alw44I GTGCAC 1 cut(s) 1208
AlwI GGATC 1 cut(s) 548
AoxI GGCC 5 cut(s) 595, 1087, 1095, 1219, 1333
ApaLI GTGCAC 1 cut(s) 1208
ApeKI GCWGC 2 cut(s) 422, 749
Asp700I GAANNNNTTC 1 cut(s) 671
AspLEI GCGC 2 cut(s) 253, 1104
AspS9I GGNCC 2 cut(s) 392, 595
AsuC2I CCSGG 1 cut(s) 184
AsuHPI GGTGA 7 cut(s) 311, 416, 717, 1071, 1120, 1264, 1316
AvaII GGWCC 1 cut(s) 392
BaeGI GKGCMC 1 cut(s) 1212
BalI TGGCCA 1 cut(s) 1335
BanII GRGCYC 2 cut(s) 91, 315
BarI GAAGNNNNNNTAC 2 cut(s) 149, 181
BbsI GAAGAC 2 cut(s) 164, 1265
Bbv12I GWGCWC 3 cut(s) 91, 355, 1212
BbvI GCAGC 2 cut(s) 409, 736
BccI CCATC 3 cut(s) 479, 565, 977
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BciT130I CCWGG 4 cut(s) 176, 876, 1218, 1281
BcnI CCSGG 1 cut(s) 184
BcoDI GTCTC 3 cut(s) 103, 893, 1142
BfaI CTAG 2 cut(s) 237, 371
BfrI CTTAAG 1 cut(s) 1091
BisI GCNGC 2 cut(s) 423, 750
BlsI GCNGC 2 cut(s) 424, 751
BmcAI AGTACT 1 cut(s) 1024
Bme1390I CCNGG 5 cut(s) 176, 184, 876, 1218, 1281
Bme18I GGWCC 1 cut(s) 392
BmgT120I GGNCC 2 cut(s) 392, 595
BmiI GGNNCC 1 cut(s) 880
BmrFI CCNGG 5 cut(s) 176, 184, 876, 1218, 1281
BmsI GCATC 4 cut(s) 132, 262, 1023, 1049
BpiI GAAGAC 2 cut(s) 164, 1265
BplI GAGNNNNNCTC 2 cut(s) 643, 675
BpmI CTGGAG 1 cut(s) 897
Bpu10I CCTNAGC 1 cut(s) 789
BpuEI CTTGAG 3 cut(s) 565, 917, 1274
BpuMI CCSGG 1 cut(s) 184
BsaI GGTCTC 1 cut(s) 103
BsaJI CCNNGG 7 cut(s) 174, 289, 451, 874, 999, 1216, 1280
Bsc4I CCNNNNNNNGG 7 cut(s) 90, 401, 514, 668, 1203, 1281, 1286
Bse1I ACTGG 3 cut(s) 607, 745, 780
Bse3DI GCAATG 1 cut(s) 345
BseBI CCWGG 4 cut(s) 176, 876, 1218, 1281
BseDI CCNNGG 7 cut(s) 174, 289, 451, 874, 999, 1216, 1280
BseGI GGATG 2 cut(s) 1040, 1240
BseLI CCNNNNNNNGG 7 cut(s) 90, 401, 514, 668, 1203, 1281, 1286
BseMI GCAATG 1 cut(s) 345
BseMII CTCAG 2 cut(s) 300, 654
BseNI ACTGG 3 cut(s) 607, 745, 780
BseSI GKGCMC 1 cut(s) 1212
BseXI GCAGC 2 cut(s) 409, 736
BseYI CCCAGC 1 cut(s) 212
Bsh1236I CGCG 1 cut(s) 1104
BshFI GGCC 5 cut(s) 597, 1089, 1097, 1221, 1335
BsiHKAI GWGCWC 3 cut(s) 91, 355, 1212
BsiSI CCGG 2 cut(s) 184, 566
BslFI GGGAC 1 cut(s) 166
BslI CCNNNNNNNGG 7 cut(s) 90, 401, 514, 668, 1203, 1281, 1286
BsmAI GTCTC 3 cut(s) 103, 893, 1142
BsmFI GGGAC 1 cut(s) 166
BsmI GAATGC 1 cut(s) 193
BsnI GGCC 5 cut(s) 597, 1089, 1097, 1221, 1335
Bso31I GGTCTC 1 cut(s) 103
Bsp1286I GDGCHC 4 cut(s) 91, 315, 355, 1212
Bsp143I GATC 2 cut(s) 30, 553
BspACI CCGC 4 cut(s) 48, 146, 508, 1012
BspANI GGCC 5 cut(s) 597, 1089, 1097, 1221, 1335
BspCNI CTCAG 2 cut(s) 301, 655
BspFNI CGCG 1 cut(s) 1104
BspLI GGNNCC 1 cut(s) 880
BspPI GGATC 1 cut(s) 548
BspTI CTTAAG 1 cut(s) 1091
BspTNI GGTCTC 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 345
BsrI ACTGG 3 cut(s) 607, 745, 780
BssECI CCNNGG 7 cut(s) 174, 289, 451, 874, 999, 1216, 1280
BssMI GATC 2 cut(s) 30, 553
BssNAI GTATAC 1 cut(s) 814
BssT1I CCWWGG 3 cut(s) 289, 451, 999
Bst1107I GTATAC 1 cut(s) 814
Bst2UI CCWGG 4 cut(s) 176, 876, 1218, 1281
Bst4CI ACNGT 5 cut(s) 383, 609, 694, 783, 955
Bst6I CTCTTC 2 cut(s) 46, 238
BstAFI CTTAAG 1 cut(s) 1091
BstC8I GCNNGC 3 cut(s) 150, 1072, 1360
BstDEI CTNAG 4 cut(s) 309, 416, 663, 789
BstEII GGTNACC 1 cut(s) 1270
BstENI CCTNNNNNAGG 1 cut(s) 399
BstF5I GGATG 2 cut(s) 1040, 1240
BstFNI CGCG 1 cut(s) 1104
BstHHI GCGC 2 cut(s) 253, 1104
BstKTI GATC 2 cut(s) 33, 556
BstMAI GTCTC 3 cut(s) 103, 893, 1142
BstMBI GATC 2 cut(s) 30, 553
BstMWI GCNNNNNNNGC 4 cut(s) 56, 197, 350, 428
BstNI CCWGG 4 cut(s) 176, 876, 1218, 1281
BstNSI RCATGY 1 cut(s) 359
BstPI GGTNACC 1 cut(s) 1270
BstSCI CCNGG 5 cut(s) 174, 182, 874, 1216, 1279
BstSLI GKGCMC 1 cut(s) 1212
BstUI CGCG 1 cut(s) 1104
BstV1I GCAGC 2 cut(s) 409, 736
BstV2I GAAGAC 2 cut(s) 164, 1265
BstX2I RGATCY 1 cut(s) 553
BstYI RGATCY 1 cut(s) 553
BstZ17I GTATAC 1 cut(s) 814
BsuRI GGCC 5 cut(s) 597, 1089, 1097, 1221, 1335
BtsCI GGATG 2 cut(s) 1040, 1240
BtsI GCAGTG 1 cut(s) 552
BtsIMutI CAGTG 4 cut(s) 306, 388, 552, 690
Cac8I GCNNGC 3 cut(s) 150, 1072, 1360
CfoI GCGC 2 cut(s) 253, 1104
Cfr13I GGNCC 2 cut(s) 392, 595
CseI GACGC 1 cut(s) 124
Csp6I GTAC 6 cut(s) 265, 646, 657, 779, 1023, 1177
CviAII CATG 5 cut(s) 356, 649, 1099, 1230, 1265
CviQI GTAC 6 cut(s) 265, 646, 657, 779, 1023, 1177
DdeI CTNAG 4 cut(s) 309, 416, 663, 789
DpnI GATC 2 cut(s) 32, 555
DpnII GATC 2 cut(s) 30, 553
EaeI YGGCCR 2 cut(s) 1219, 1333
Eam1104I CTCTTC 2 cut(s) 46, 238
EarI CTCTTC 2 cut(s) 46, 238
Ecl136II GAGCTC 1 cut(s) 89
Eco130I CCWWGG 3 cut(s) 289, 451, 999
Eco147I AGGCCT 1 cut(s) 1089
Eco24I GRGCYC 2 cut(s) 91, 315
Eco31I GGTCTC 1 cut(s) 103
Eco32I GATATC 1 cut(s) 709
Eco47I GGWCC 1 cut(s) 392
Eco53kI GAGCTC 1 cut(s) 89
Eco57I CTGAAG 1 cut(s) 497
Eco91I GGTNACC 1 cut(s) 1270
EcoICRI GAGCTC 1 cut(s) 89
EcoNI CCTNNNNNAGG 1 cut(s) 399
EcoO65I GGTNACC 1 cut(s) 1270
EcoRII CCWGG 4 cut(s) 174, 874, 1216, 1279
EcoRV GATATC 1 cut(s) 709
EcoT14I CCWWGG 3 cut(s) 289, 451, 999
EcoT38I GRGCYC 2 cut(s) 91, 315
ErhI CCWWGG 3 cut(s) 289, 451, 999
FaeI CATG 5 cut(s) 359, 652, 1102, 1233, 1268
FaqI GGGAC 1 cut(s) 166
FatI CATG 5 cut(s) 355, 648, 1098, 1229, 1264
FauI CCCGC 1 cut(s) 515
FblI GTMKAC 3 cut(s) 365, 576, 813
Fnu4HI GCNGC 2 cut(s) 423, 750
FokI GGATG 2 cut(s) 1027, 1247
FriOI GRGCYC 2 cut(s) 91, 315
Fsp4HI GCNGC 2 cut(s) 423, 750
FspBI CTAG 2 cut(s) 237, 371
GlaI GCGC 2 cut(s) 252, 1103
GluI GCNGC 2 cut(s) 423, 750
GsaI CCCAGC 1 cut(s) 216
GsuI CTGGAG 1 cut(s) 897
HaeIII GGCC 5 cut(s) 597, 1089, 1097, 1221, 1335
HapII CCGG 2 cut(s) 184, 566
HgaI GACGC 1 cut(s) 124
HhaI GCGC 2 cut(s) 253, 1104
Hin1II CATG 5 cut(s) 359, 652, 1102, 1233, 1268
Hin6I GCGC 2 cut(s) 251, 1102
HinP1I GCGC 2 cut(s) 251, 1102
HinfI GANTC 9 cut(s) 578, 672, 818, 927, 987, 1157, 1249, 1261, 1368
HpaII CCGG 2 cut(s) 184, 566
HphI GGTGA 7 cut(s) 311, 416, 717, 1071, 1120, 1264, 1316
Hpy166II GTNNAC 7 cut(s) 366, 577, 657, 814, 951, 1177, 1210
Hpy188I TCNGA 6 cut(s) 93, 484, 615, 635, 844, 982
Hpy188III TCNNGA 7 cut(s) 84, 227, 320, 662, 680, 699, 1253
Hpy8I GTNNAC 7 cut(s) 366, 577, 657, 814, 951, 1177, 1210
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 4 cut(s) 88, 521, 1079, 1301
HpyCH4III ACNGT 5 cut(s) 383, 609, 694, 783, 955
HpyCH4IV ACGT 1 cut(s) 117
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 197, 350, 428
HpyF3I CTNAG 4 cut(s) 309, 416, 663, 789
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 5 cut(s) 359, 652, 1102, 1233, 1268
HspAI GCGC 2 cut(s) 251, 1102
Kzo9I GATC 2 cut(s) 30, 553
LmnI GCTCC 2 cut(s) 760, 878
Lsp1109I GCAGC 2 cut(s) 409, 736
LweI GCATC 4 cut(s) 132, 262, 1023, 1049
MaeI CTAG 2 cut(s) 237, 371
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 5 cut(s) 299, 377, 497, 535, 1270
MalI GATC 2 cut(s) 32, 555
MboI GATC 2 cut(s) 30, 553
MfeI CAATTG 1 cut(s) 426
MflI RGATCY 1 cut(s) 553
MhlI GDGCHC 4 cut(s) 91, 315, 355, 1212
MlsI TGGCCA 1 cut(s) 1335
MluCI AATT 3 cut(s) 79, 426, 1376
MluNI TGGCCA 1 cut(s) 1335
MlyI GAGTC 2 cut(s) 572, 1255
Mox20I TGGCCA 1 cut(s) 1335
MroXI GAANNNNTTC 1 cut(s) 671
MscI TGGCCA 1 cut(s) 1335
MseI TTAA 3 cut(s) 1032, 1092, 1170
Msp20I TGGCCA 1 cut(s) 1335
MspCI CTTAAG 1 cut(s) 1091
MspI CCGG 2 cut(s) 184, 566
MspR9I CCNGG 5 cut(s) 176, 184, 876, 1218, 1281
MunI CAATTG 1 cut(s) 426
Mva1269I GAATGC 1 cut(s) 193
MvaI CCWGG 4 cut(s) 176, 876, 1218, 1281
MvnI CGCG 1 cut(s) 1104
MwoI GCNNNNNNNGC 4 cut(s) 56, 197, 350, 428
NciI CCSGG 1 cut(s) 184
NdeII GATC 2 cut(s) 30, 553
NlaIII CATG 5 cut(s) 359, 652, 1102, 1233, 1268
NlaIV GGNNCC 1 cut(s) 880
NmuCI GTSAC 4 cut(s) 299, 497, 535, 1270
NspI RCATGY 1 cut(s) 359
PceI AGGCCT 1 cut(s) 1089
PctI GAATGC 1 cut(s) 193
PdmI GAANNNNTTC 1 cut(s) 671
PfeI GAWTC 7 cut(s) 672, 818, 927, 987, 1157, 1249, 1368
PfoI TCCNGGA 1 cut(s) 182
PkrI GCNGC 2 cut(s) 424, 751
PleI GAGTC 2 cut(s) 572, 1255
PpsI GAGTC 2 cut(s) 572, 1255
PsiI TTATAA 1 cut(s) 329
Psp124BI GAGCTC 1 cut(s) 91
Psp6I CCWGG 4 cut(s) 174, 874, 1216, 1279
PspEI GGTNACC 1 cut(s) 1270
PspFI CCCAGC 1 cut(s) 212
PspGI CCWGG 4 cut(s) 174, 874, 1216, 1279
PspN4I GGNNCC 1 cut(s) 880
PspPI GGNCC 2 cut(s) 392, 595
PsuI RGATCY 1 cut(s) 553
RsaI GTAC 6 cut(s) 266, 647, 658, 780, 1024, 1178
RsaNI GTAC 6 cut(s) 265, 646, 657, 779, 1023, 1177
SacI GAGCTC 1 cut(s) 91
SaqAI TTAA 3 cut(s) 1032, 1092, 1170
SatI GCNGC 2 cut(s) 423, 750
Sau3AI GATC 2 cut(s) 30, 553
Sau96I GGNCC 2 cut(s) 392, 595
ScaI AGTACT 1 cut(s) 1024
SchI GAGTC 2 cut(s) 572, 1255
ScrFI CCNGG 5 cut(s) 176, 184, 876, 1218, 1281
SduI GDGCHC 4 cut(s) 91, 315, 355, 1212
SfaNI GCATC 4 cut(s) 132, 262, 1023, 1049
SinI GGWCC 1 cut(s) 392
SmlI CTYRAG 4 cut(s) 580, 896, 1091, 1253
SmoI CTYRAG 4 cut(s) 580, 896, 1091, 1253
Sse9I AATT 3 cut(s) 79, 426, 1376
SseBI AGGCCT 1 cut(s) 1089
SsiI CCGC 4 cut(s) 48, 146, 508, 1012
SspI AATATT 1 cut(s) 640
SspMI CTAG 2 cut(s) 237, 371
SstI GAGCTC 1 cut(s) 91
StuI AGGCCT 1 cut(s) 1089
StyD4I CCNGG 5 cut(s) 174, 182, 874, 1216, 1279
StyI CCWWGG 3 cut(s) 289, 451, 999
TaaI ACNGT 5 cut(s) 383, 609, 694, 783, 955
TaiI ACGT 1 cut(s) 120
TaqI TCGA 2 cut(s) 29, 700
TaqII GACCGA 1 cut(s) 176
TasI AATT 3 cut(s) 79, 426, 1376
TatI WGTACW 3 cut(s) 645, 656, 1022
TfiI GAWTC 7 cut(s) 672, 818, 927, 987, 1157, 1249, 1368
Tru1I TTAA 3 cut(s) 1032, 1092, 1170
Tru9I TTAA 3 cut(s) 1032, 1092, 1170
TscAI CASTG 4 cut(s) 313, 388, 552, 697
TseFI GTSAC 4 cut(s) 299, 497, 535, 1270
TseI GCWGC 2 cut(s) 422, 749
Tsp45I GTSAC 4 cut(s) 299, 497, 535, 1270
TspGWI ACGGA 1 cut(s) 1194
TspRI CASTG 4 cut(s) 313, 388, 552, 697
Vha464I CTTAAG 1 cut(s) 1091
VneI GTGCAC 1 cut(s) 1208
VpaK11BI GGWCC 1 cut(s) 392
XagI CCTNNNNNAGG 1 cut(s) 399
XceI RCATGY 1 cut(s) 359
XmiI GTMKAC 3 cut(s) 365, 576, 813
XmnI GAANNNNTTC 1 cut(s) 671
XspI CTAG 2 cut(s) 237, 371
ZrmI AGTACT 1 cut(s) 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.