MD05G1111000.v1.1

LL-diaminopimelate aminotransferase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
22813927 .. 22817818
3892 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1111000.v1.1.491

Sequence Viewer

Length: 1389 bp
ATGTCTTCTTCTTCGCTGCTGCAGATTTCGATCTCGTCGTCTTCCTCCGCTTTCTTCGCCAACCACAAATTCACATTCAATTCCAGAGCTAATAATGCATCGCTTCCAGCAAAAGCCATCAGCATCTGCAAATGCGTCGCCACTCCGCAGGCAGAGAAGACCGAGTACAAGACCCATGTGTCCCGGAATGCCAACATAGCCAAACTTCAAGCTGGGTATCTTTTTCCAGAGGTTGCTAGAAGAAGGGCTGCACACTTGCAGAAGTACCCTGATGCACAAGTGATTAGCCTTGGGATTGGTGACACTACTGAGCCCATTCCAGAAGTTATAACCTCTGCAATGGCTAAGAGGGCACATGCTTTGTCCACCCTAGAGGGTTACAGTGGCTATGGAGCTGAACAAGGTGAAAAGCCACTAAGAGCTGCAATTGCCTCAACATTTTATGACAACCTTGGCATAGAGGAAGATGACATCTTTGTTTCTGATGGTGCAAAATGTGACATATCCCGCCTTCAGGTTGTTTTTGGGTCTAATGTCACAATAGCAGTGCAAGATCCATCATATCCGGCTTATGTAGACTCAAGTGTTATTATGGGCCAGACTGGACAGTATCAGAAAGATGTTGAGAAGTTCGGAAATATTGAGTACATGAGATGTACTCCTGAGAATGGATTCTTTCCTGATTTACGCACTGTTGCTCGAACAGATATCATATTTTTCTGCTCACCAAACAACCCGACTGGTTCTGCTGCAACAAGGGAGCAACTGACACAACTGGTACAGTTTGCTAAGGATAATGGGTCAATCATAGTATACGATTCAGCATATGCCATGTATATGTCAGATGACAATCCACGCTCGATTTTTGAAATCCCAGGAGCCAAAGAGGTTGCGCTTGAGACATCATCGTTCAGTAAGTATGCTGGATTCACAGGAGTTCGTCTGGGGTGGACTGTTGTTCCAAAGCAATTGCTCTTTTCAGATGGATTCCCTGTTGCCAAGGACTTCAGCCGCATTGTTTGTACTTGCTTCAATGGTGCATCCAATATATCCCAAGCTGGTGGTCTTGCTTGCCTTTCACCAGAAGGCCTTAAGGCTATGCGTGAGGTGATTGGTTTCTACAAAGAAAATACAGAAATAATAGTGGAGACATTTGAATCTCTTGGCTTTAAGGTGTATGGAGGGAAGAATGCACCCTATGTGTGGGTGCACTTCCCTGGCCGAAGCTCATGGGATGTATTCAGCGAGATTCTTGAGAAGACTCATGTGGTCACCACACCTGGGAGTGGTTTCGGATTTGGGGGTGAAGGTTTCGTCAGGGTTAGCGCTTTTGGTCACCGGAAAAATGTATTAGAAGCTTGCAAAAGGTTCAAGCAATTATACAAGTGA

Protein Analysis

463

Amino Acids

50.49

Weight (kDa)

7.03

Isoelectric Point (pI)

51.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 93 - 457 2.2e-38 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 329
AasI GACNNNNNNGTC 1 cut(s) 178
AccI GTMKAC 2 cut(s) 576, 813
AciI CCGC 4 cut(s) 48, 146, 508, 1012
AclWI GGATC 1 cut(s) 548
AcoI YGGCCR 1 cut(s) 1219
AcsI RAATTY 1 cut(s) 68
AcuI CTGAAG 2 cut(s) 497, 991
AfaI GTAC 6 cut(s) 167, 266, 647, 658, 780, 1024
AfeI AGCGCT 1 cut(s) 1327
AfiI CCNNNNNNNGG 5 cut(s) 514, 668, 1203, 1281, 1286
AflII CTTAAG 1 cut(s) 1091
AgsI TTSAA 6 cut(s) 79, 209, 869, 1033, 1157, 1372
AjnI CCWGG 3 cut(s) 874, 1216, 1279
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
AluBI AGCT 7 cut(s) 89, 212, 395, 422, 1058, 1227, 1358
AluI AGCT 7 cut(s) 89, 212, 395, 422, 1058, 1227, 1358
Alw21I GWGCWC 1 cut(s) 1212
Alw26I GTCTC 2 cut(s) 893, 1142
Alw44I GTGCAC 1 cut(s) 1208
AlwI GGATC 1 cut(s) 548
AlwNI CAGNNNCTG 1 cut(s) 126
Aor51HI AGCGCT 1 cut(s) 1327
AoxI GGCC 3 cut(s) 595, 1087, 1219
ApaLI GTGCAC 1 cut(s) 1208
ApeKI GCWGC 5 cut(s) 16, 19, 248, 422, 749
ApoI RAATTY 1 cut(s) 68
Asp700I GAANNNNTTC 1 cut(s) 671
AspLEI GCGC 2 cut(s) 895, 1328
AspS9I GGNCC 1 cut(s) 595
AsuC2I CCSGG 1 cut(s) 184
AsuHPI GGTGA 8 cut(s) 311, 416, 717, 1071, 1120, 1264, 1316, 1328
BaeGI GKGCMC 2 cut(s) 355, 1212
BanII GRGCYC 1 cut(s) 315
BarI GAAGNNNNNNTAC 2 cut(s) 149, 181
BbsI GAAGAC 3 cut(s) 33, 164, 1265
Bbv12I GWGCWC 1 cut(s) 1212
BbvI GCAGC 5 cut(s) 3, 6, 235, 409, 736
BccI CCATC 4 cut(s) 125, 479, 565, 977
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BciT130I CCWGG 3 cut(s) 876, 1218, 1281
BcnI CCSGG 1 cut(s) 184
BcoDI GTCTC 2 cut(s) 893, 1142
BfaI CTAG 2 cut(s) 237, 371
BfmI CTRYAG 1 cut(s) 20
BfoI RGCGCY 1 cut(s) 1329
BfrI CTTAAG 1 cut(s) 1091
BisI GCNGC 6 cut(s) 17, 20, 249, 423, 750, 1012
BlsI GCNGC 6 cut(s) 18, 21, 250, 424, 751, 1013
Bme1390I CCNGG 4 cut(s) 184, 876, 1218, 1281
BmgT120I GGNCC 1 cut(s) 595
BmiI GGNNCC 1 cut(s) 880
BmrFI CCNGG 4 cut(s) 184, 876, 1218, 1281
BmsI GCATC 4 cut(s) 107, 132, 262, 1049
BpiI GAAGAC 3 cut(s) 33, 164, 1265
BplI GAGNNNNNCTC 2 cut(s) 643, 675
Bpu10I CCTNAGC 1 cut(s) 789
BpuEI CTTGAG 3 cut(s) 565, 917, 1274
BpuMI CCSGG 1 cut(s) 184
BsaBI GATNNNNATC 2 cut(s) 29, 849
BsaJI CCNNGG 6 cut(s) 289, 451, 874, 999, 1216, 1280
BsaWI WCCGGW 1 cut(s) 1338
Bsc4I CCNNNNNNNGG 5 cut(s) 514, 668, 1203, 1281, 1286
Bse1I ACTGG 3 cut(s) 607, 745, 780
Bse3DI GCAATG 1 cut(s) 345
Bse8I GATNNNNATC 2 cut(s) 29, 849
BseBI CCWGG 3 cut(s) 876, 1218, 1281
BseDI CCNNGG 6 cut(s) 289, 451, 874, 999, 1216, 1280
BseGI GGATG 2 cut(s) 1040, 1240
BseJI GATNNNNATC 2 cut(s) 29, 849
BseLI CCNNNNNNNGG 5 cut(s) 514, 668, 1203, 1281, 1286
BseMI GCAATG 1 cut(s) 345
BseMII CTCAG 2 cut(s) 300, 654
BseNI ACTGG 3 cut(s) 607, 745, 780
BseSI GKGCMC 2 cut(s) 355, 1212
BseXI GCAGC 5 cut(s) 3, 6, 235, 409, 736
BseYI CCCAGC 1 cut(s) 212
BsgI GTGCAG 1 cut(s) 234
BshFI GGCC 3 cut(s) 597, 1089, 1221
BsiHKAI GWGCWC 1 cut(s) 1212
BsiSI CCGG 3 cut(s) 184, 566, 1339
BslFI GGGAC 1 cut(s) 166
BslI CCNNNNNNNGG 5 cut(s) 514, 668, 1203, 1281, 1286
BsmAI GTCTC 2 cut(s) 893, 1142
BsmFI GGGAC 1 cut(s) 166
BsmI GAATGC 2 cut(s) 193, 1195
BsnI GGCC 3 cut(s) 597, 1089, 1221
Bsp1286I GDGCHC 3 cut(s) 315, 355, 1212
Bsp143I GATC 2 cut(s) 30, 553
BspACI CCGC 4 cut(s) 48, 146, 508, 1012
BspANI GGCC 3 cut(s) 597, 1089, 1221
BspCNI CTCAG 2 cut(s) 301, 655
BspLI GGNNCC 1 cut(s) 880
BspMAI CTGCAG 1 cut(s) 24
BspPI GGATC 1 cut(s) 548
BspTI CTTAAG 1 cut(s) 1091
BsrDI GCAATG 1 cut(s) 345
BsrI ACTGG 3 cut(s) 607, 745, 780
BssECI CCNNGG 6 cut(s) 289, 451, 874, 999, 1216, 1280
BssMI GATC 2 cut(s) 30, 553
BssNAI GTATAC 1 cut(s) 814
BssT1I CCWWGG 3 cut(s) 289, 451, 999
Bst1107I GTATAC 1 cut(s) 814
Bst2UI CCWGG 3 cut(s) 876, 1218, 1281
Bst4CI ACNGT 5 cut(s) 383, 609, 694, 783, 955
BstAFI CTTAAG 1 cut(s) 1091
BstC8I GCNNGC 3 cut(s) 150, 1072, 1360
BstDEI CTNAG 5 cut(s) 309, 345, 416, 663, 789
BstEII GGTNACC 2 cut(s) 1270, 1334
BstF5I GGATG 2 cut(s) 1040, 1240
BstH2I RGCGCY 1 cut(s) 1329
BstHHI GCGC 2 cut(s) 895, 1328
BstKTI GATC 2 cut(s) 33, 556
BstMAI GTCTC 2 cut(s) 893, 1142
BstMBI GATC 2 cut(s) 30, 553
BstMWI GCNNNNNNNGC 5 cut(s) 56, 95, 197, 350, 428
BstNI CCWGG 3 cut(s) 876, 1218, 1281
BstNSI RCATGY 1 cut(s) 359
BstPI GGTNACC 2 cut(s) 1270, 1334
BstSCI CCNGG 4 cut(s) 182, 874, 1216, 1279
BstSFI CTRYAG 1 cut(s) 20
BstSLI GKGCMC 2 cut(s) 355, 1212
BstV1I GCAGC 5 cut(s) 3, 6, 235, 409, 736
BstV2I GAAGAC 3 cut(s) 33, 164, 1265
BstX2I RGATCY 1 cut(s) 553
BstXI CCANNNNNNTGG 1 cut(s) 1061
BstYI RGATCY 1 cut(s) 553
BstZ17I GTATAC 1 cut(s) 814
BsuRI GGCC 3 cut(s) 597, 1089, 1221
BtgZI GCGATG 1 cut(s) 84
BtsCI GGATG 2 cut(s) 1040, 1240
BtsI GCAGTG 1 cut(s) 552
BtsIMutI CAGTG 3 cut(s) 388, 552, 690
Cac8I GCNNGC 3 cut(s) 150, 1072, 1360
CaiI CAGNNNCTG 1 cut(s) 126
CfoI GCGC 2 cut(s) 895, 1328
Cfr13I GGNCC 1 cut(s) 595
CseI GACGC 1 cut(s) 124
Csp6I GTAC 6 cut(s) 166, 265, 646, 657, 779, 1023
CviAII CATG 6 cut(s) 176, 356, 649, 832, 1230, 1265
CviQI GTAC 6 cut(s) 166, 265, 646, 657, 779, 1023
DdeI CTNAG 5 cut(s) 309, 345, 416, 663, 789
DpnI GATC 2 cut(s) 32, 555
DpnII GATC 2 cut(s) 30, 553
DrdI GACNNNNNNGTC 1 cut(s) 178
DseDI GACNNNNNNGTC 1 cut(s) 178
EaeI YGGCCR 1 cut(s) 1219
Eco130I CCWWGG 3 cut(s) 289, 451, 999
Eco147I AGGCCT 1 cut(s) 1089
Eco24I GRGCYC 1 cut(s) 315
Eco32I GATATC 1 cut(s) 709
Eco47III AGCGCT 1 cut(s) 1327
Eco57I CTGAAG 2 cut(s) 497, 991
Eco91I GGTNACC 2 cut(s) 1270, 1334
EcoO65I GGTNACC 2 cut(s) 1270, 1334
EcoRII CCWGG 3 cut(s) 874, 1216, 1279
EcoRV GATATC 1 cut(s) 709
EcoT14I CCWWGG 3 cut(s) 289, 451, 999
EcoT22I ATGCAT 1 cut(s) 100
EcoT38I GRGCYC 1 cut(s) 315
ErhI CCWWGG 3 cut(s) 289, 451, 999
FaeI CATG 6 cut(s) 179, 359, 652, 835, 1233, 1268
FaqI GGGAC 1 cut(s) 166
FatI CATG 6 cut(s) 175, 355, 648, 831, 1229, 1264
FauI CCCGC 1 cut(s) 515
FauNDI CATATG 1 cut(s) 826
FblI GTMKAC 2 cut(s) 576, 813
Fnu4HI GCNGC 6 cut(s) 17, 20, 249, 423, 750, 1012
FokI GGATG 2 cut(s) 1027, 1247
FriOI GRGCYC 1 cut(s) 315
Fsp4HI GCNGC 6 cut(s) 17, 20, 249, 423, 750, 1012
FspBI CTAG 2 cut(s) 237, 371
GlaI GCGC 2 cut(s) 894, 1327
GluI GCNGC 6 cut(s) 17, 20, 249, 423, 750, 1012
GsaI CCCAGC 1 cut(s) 216
HaeII RGCGCY 1 cut(s) 1329
HaeIII GGCC 3 cut(s) 597, 1089, 1221
HapII CCGG 3 cut(s) 184, 566, 1339
HgaI GACGC 1 cut(s) 124
HhaI GCGC 2 cut(s) 895, 1328
Hin1II CATG 6 cut(s) 179, 359, 652, 835, 1233, 1268
Hin6I GCGC 2 cut(s) 893, 1326
HinP1I GCGC 2 cut(s) 893, 1326
HindIII AAGCTT 1 cut(s) 1356
HinfI GANTC 8 cut(s) 578, 672, 818, 927, 987, 1157, 1249, 1261
HpaII CCGG 3 cut(s) 184, 566, 1339
HphI GGTGA 8 cut(s) 311, 416, 717, 1071, 1120, 1264, 1316, 1328
Hpy166II GTNNAC 5 cut(s) 366, 577, 814, 951, 1210
Hpy188I TCNGA 6 cut(s) 484, 615, 635, 844, 982, 1295
Hpy188III TCNNGA 6 cut(s) 84, 227, 320, 662, 680, 1253
Hpy8I GTNNAC 5 cut(s) 366, 577, 814, 951, 1210
Hpy99I CGWCG 2 cut(s) 40, 140
HpyAV CCTTC 4 cut(s) 237, 521, 1079, 1301
HpyCH4III ACNGT 5 cut(s) 383, 609, 694, 783, 955
HpyF10VI GCNNNNNNNGC 5 cut(s) 56, 95, 197, 350, 428
HpyF3I CTNAG 5 cut(s) 309, 345, 416, 663, 789
Hsp92II CATG 6 cut(s) 179, 359, 652, 835, 1233, 1268
HspAI GCGC 2 cut(s) 893, 1326
Kzo9I GATC 2 cut(s) 30, 553
LmnI GCTCC 3 cut(s) 392, 760, 878
Lsp1109I GCAGC 5 cut(s) 3, 6, 235, 409, 736
LweI GCATC 4 cut(s) 107, 132, 262, 1049
MaeI CTAG 2 cut(s) 237, 371
MaeIII GTNAC 6 cut(s) 299, 377, 497, 535, 1270, 1334
MalI GATC 2 cut(s) 32, 555
MboI GATC 2 cut(s) 30, 553
MboII GAAGA 8 cut(s) 3, 33, 46, 169, 252, 476, 1198, 1270
MfeI CAATTG 2 cut(s) 426, 968
MflI RGATCY 1 cut(s) 553
MhlI GDGCHC 3 cut(s) 315, 355, 1212
MluCI AATT 5 cut(s) 68, 79, 426, 968, 1376
MlyI GAGTC 2 cut(s) 572, 1255
Mph1103I ATGCAT 1 cut(s) 100
MroXI GAANNNNTTC 1 cut(s) 671
MseI TTAA 2 cut(s) 1092, 1170
MslI CAYNNNNRTG 1 cut(s) 836
MspCI CTTAAG 1 cut(s) 1091
MspI CCGG 3 cut(s) 184, 566, 1339
MspR9I CCNGG 4 cut(s) 184, 876, 1218, 1281
MunI CAATTG 2 cut(s) 426, 968
Mva1269I GAATGC 2 cut(s) 193, 1195
MvaI CCWGG 3 cut(s) 876, 1218, 1281
MwoI GCNNNNNNNGC 5 cut(s) 56, 95, 197, 350, 428
NciI CCSGG 1 cut(s) 184
NdeI CATATG 1 cut(s) 826
NdeII GATC 2 cut(s) 30, 553
NlaIII CATG 6 cut(s) 179, 359, 652, 835, 1233, 1268
NlaIV GGNNCC 1 cut(s) 880
NmuCI GTSAC 5 cut(s) 299, 497, 535, 1270, 1334
NsiI ATGCAT 1 cut(s) 100
NspI RCATGY 1 cut(s) 359
PceI AGGCCT 1 cut(s) 1089
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PctI GAATGC 2 cut(s) 193, 1195
PdmI GAANNNNTTC 1 cut(s) 671
PfeI GAWTC 6 cut(s) 672, 818, 927, 987, 1157, 1249
PfoI TCCNGGA 1 cut(s) 182
PkrI GCNGC 6 cut(s) 18, 21, 250, 424, 751, 1013
PleI GAGTC 2 cut(s) 572, 1255
PpsI GAGTC 2 cut(s) 572, 1255
PsiI TTATAA 1 cut(s) 329
Psp6I CCWGG 3 cut(s) 874, 1216, 1279
PspEI GGTNACC 2 cut(s) 1270, 1334
PspFI CCCAGC 1 cut(s) 212
PspGI CCWGG 3 cut(s) 874, 1216, 1279
PspN4I GGNNCC 1 cut(s) 880
PspPI GGNCC 1 cut(s) 595
PstI CTGCAG 1 cut(s) 24
PstNI CAGNNNCTG 1 cut(s) 126
PsuI RGATCY 1 cut(s) 553
RsaI GTAC 6 cut(s) 167, 266, 647, 658, 780, 1024
RsaNI GTAC 6 cut(s) 166, 265, 646, 657, 779, 1023
RseI CAYNNNNRTG 1 cut(s) 836
SaqAI TTAA 2 cut(s) 1092, 1170
SatI GCNGC 6 cut(s) 17, 20, 249, 423, 750, 1012
Sau3AI GATC 2 cut(s) 30, 553
Sau96I GGNCC 1 cut(s) 595
SchI GAGTC 2 cut(s) 572, 1255
ScrFI CCNGG 4 cut(s) 184, 876, 1218, 1281
SduI GDGCHC 3 cut(s) 315, 355, 1212
SfaNI GCATC 4 cut(s) 107, 132, 262, 1049
SfcI CTRYAG 1 cut(s) 20
SmiMI CAYNNNNRTG 1 cut(s) 836
SmlI CTYRAG 4 cut(s) 580, 896, 1091, 1253
SmoI CTYRAG 4 cut(s) 580, 896, 1091, 1253
Sse9I AATT 5 cut(s) 68, 79, 426, 968, 1376
SseBI AGGCCT 1 cut(s) 1089
SsiI CCGC 4 cut(s) 48, 146, 508, 1012
SspI AATATT 1 cut(s) 640
SspMI CTAG 2 cut(s) 237, 371
StuI AGGCCT 1 cut(s) 1089
StyD4I CCNGG 4 cut(s) 182, 874, 1216, 1279
StyI CCWWGG 3 cut(s) 289, 451, 999
TaaI ACNGT 5 cut(s) 383, 609, 694, 783, 955
TaqI TCGA 3 cut(s) 29, 700, 860
TaqII GACCGA 1 cut(s) 176
TasI AATT 5 cut(s) 68, 79, 426, 968, 1376
TatI WGTACW 4 cut(s) 165, 645, 656, 1022
TauI GCSGC 1 cut(s) 1014
TfiI GAWTC 6 cut(s) 672, 818, 927, 987, 1157, 1249
Tru1I TTAA 2 cut(s) 1092, 1170
Tru9I TTAA 2 cut(s) 1092, 1170
TscAI CASTG 3 cut(s) 388, 552, 697
TseFI GTSAC 5 cut(s) 299, 497, 535, 1270, 1334
TseI GCWGC 5 cut(s) 16, 19, 248, 422, 749
Tsp45I GTSAC 5 cut(s) 299, 497, 535, 1270, 1334
TspRI CASTG 3 cut(s) 388, 552, 697
Vha464I CTTAAG 1 cut(s) 1091
VneI GTGCAC 1 cut(s) 1208
XapI RAATTY 1 cut(s) 68
XceI RCATGY 1 cut(s) 359
XmiI GTMKAC 2 cut(s) 576, 813
XmnI GAANNNNTTC 1 cut(s) 671
XspI CTAG 2 cut(s) 237, 371
Zsp2I ATGCAT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.