Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006887

Physical Location & Seq

Genomic Coordinates Reverse (-)

4882549 .. 4886178

Gene Structure 3630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG032400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGGCTGTGAGTCAAGCTTCAATCTCGTCTTCTTCCTCCGGCTTCAATTTCAAGTCGCGGACCTCCAGAGCGCAGAGCGTCGCCGTTCCCGCCAAAACCATCGGCGGCTTCTTTAAATGCGTCGCCACTCCTGAGAAGACAGAGTATAAGACTCAGGTGAGTCGCAATGCCAACATGGGGAAGCTTCAAGCTGGTTATCTTTTTCCAGAGATTGCTAGGAGGAGGAATGCGCACTTGGAGAAGTACCCTGATGCGAAAATAATTCTCCTTGGAATTGGTGACACTACCGAGCCCATTCCAGAATATATAACCTCTGTAATTGCAAAGAGAGCACTTGCCATGTCCACCCTAGAGGGTTACAGTGGTTATGGACCTGAACAAGGTGAAAAGCCACTGAGATCTGCACTTGCTAAAACATTTTATGATAACCTTGGCATAGAGGAAGATGATATATTTGTTTCTGATGGTGCAAAATGTGACATATCCCGCCTTCAGATTCTTTTTGGGGAGGATAAAACAATAGCAGTGCAAGATCCATCATATCCGGCTTATGTAGACTCAAGTGTTATTATGGGCCAGACAGGAGAGTATCAGAAATCTGTTGAGAAGTTTGCAAACATTGAGTACATGAGGTGTACTCTCGATAATGGTTTTTTTCCTGATCTGTCCTCTACTAATCGAACAGATATCATATTTTTCTGTTCACCAAACAATCCTACTGGCTCTGCTGCAACAAGAGAGCAACTGACACAACTTGTAAAGTTTGCCAAGGATAATGGTTCAATCATAGTCTATGATTCTGCATATGCCTTGTATATGTCAGATGATAGTCCACGCTCCATCTTTGAAATCCCTGGAGCTAAAGATGTTGCACTTGAGATATCATCATTTAGCAAGTATGCTGGATTCACTGGAGTTCGTTTGGGGTGGACTGTGATTCCAAAGCAGTTGTGCTATTCGGATGGTTTTCCAGTCGCCAAGGACTTCAACCGCATTGTTTGTACTTGCTTCAATGGTGCATCCACTATTATCCAAGCTGGTGGTCTGGCTTGCCTTGAACCAGAGGGTCTTAAGGCTATGCACGGGGTGATAAATTTCTACAAAGAAAATACTAATATCATAATGGAGACATTTAACTCCCTTGGCTTTAGTGTGTATGGAGGGATGAATGCTCCATATGTGTGGGTCCACTTCCCCGGACAAAGCTCATGGGATGTGTTTGCTGAGATTCTTGAGAAGACTCATGTGGTTACCACACCTGGAAGTGGCTTTGGACCTGGTGGTGAAGGTTTCATCAGGGTTAGTGCCTTTGGTCACAGGGACAATATATTAGAAGCATGTAAGAGATTCAAGCAATTATACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008483 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009627 GO:0009719 GO:0009725 GO:0009735 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010285 GO:0014070 GO:0016740 GO:0016769 GO:0023052 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046677 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0098542 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00300 ko01100 ko01110 ko01130 ko01230 map00300 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

455

Amino Acids

49.87

Weight (kDa)

6.06

Isoelectric Point (pI)

52.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	86 - 450	3.1e-38	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33680
fragaria_vesca	FvH4_2g02700 FvH4_2g02700
malus_domestica	MD00G1080600.v1.1 MD05G1111000.v1.1 MD10G1114500.v1.1
prunus_persica	Prupe.8G156000_v2.0.a1
pyrus_communis	pycom05g10690 pycom10g09890 pycom10g09900
rosa_chinensis	RchiOBHm_Chr6g0247121
rosa_laevigata	RLG00000015219 RLG00000030359 RLG00000030363
rosa_multiflora	Rmu_sc0004577.1_g000011 Rmu_sc0030830.1_g000004
rosa_roxburghii	Rroxscaffold_3G00276080 Rroxscaffold_7G00214330
rosa_rugosa	Rorug05G0522500 Rorug05G0522600
rosa_samantha	Rh6AG037800 Rh6BG032400 Rh6BG032700 Rh6CG033500 Rh6DG031200
rosa_wichuraiana	Rw6G003220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	231
AccI	GTMKAC	1 cut(s)	555
AccII	CGCG	1 cut(s)	58
AciI	CCGC	5 cut(s)	58, 90, 105, 487, 991
AclWI	GGATC	1 cut(s)	527
AcsI	RAATTY	1 cut(s)	1093
AcuI	CTGAAG	1 cut(s)	476
AdeI	CACNNNGTG	1 cut(s)	1087
AfaI	GTAC	4 cut(s)	245, 626, 637, 1003
AfiI	CCNNNNNNNGG	3 cut(s)	177, 380, 1265
AflII	CTTAAG	1 cut(s)	1070
AjnI	CCWGG	3 cut(s)	853, 1258, 1276
AjuI	GAANNNNNNNTTGG	2 cut(s)	218, 250
AluBI	AGCT	6 cut(s)	17, 184, 191, 860, 1037, 1206
AluI	AGCT	6 cut(s)	17, 184, 191, 860, 1037, 1206
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	1 cut(s)	1121
AlwI	GGATC	1 cut(s)	527
AoxI	GGCC	1 cut(s)	574
ApeKI	GCWGC	1 cut(s)	728
ApoI	RAATTY	1 cut(s)	1093
AspLEI	GCGC	2 cut(s)	73, 232
AspS9I	GGNCC	5 cut(s)	60, 371, 574, 1186, 1274
AsuC2I	CCSGG	1 cut(s)	1197
AsuHPI	GGTGA	6 cut(s)	169, 290, 395, 696, 1099, 1295
AvaII	GGWCC	4 cut(s)	60, 371, 1186, 1274
BanII	GRGCYC	1 cut(s)	294
BbsI	GAAGAC	3 cut(s)	21, 143, 1244
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	1 cut(s)	715
BccI	CCATC	5 cut(s)	107, 458, 544, 848, 956
BceAI	ACGGC	1 cut(s)	68
BciT130I	CCWGG	3 cut(s)	855, 1260, 1278
BcnI	CCSGG	1 cut(s)	1197
BcoDI	GTCTC	1 cut(s)	1121
BfaI	CTAG	2 cut(s)	216, 350
BfrI	CTTAAG	1 cut(s)	1070
BglII	AGATCT	1 cut(s)	398
BisI	GCNGC	2 cut(s)	106, 729
BlsI	GCNGC	2 cut(s)	107, 730
Bme1390I	CCNGG	4 cut(s)	855, 1197, 1260, 1278
Bme18I	GGWCC	4 cut(s)	60, 371, 1186, 1274
BmgT120I	GGNCC	5 cut(s)	60, 371, 574, 1186, 1274
BmiI	GGNNCC	1 cut(s)	1187
BmrFI	CCNGG	4 cut(s)	855, 1197, 1260, 1278
BmsI	GCATC	2 cut(s)	241, 1028
BpiI	GAAGAC	3 cut(s)	21, 143, 1244
BplI	GAGNNNNNCTC	2 cut(s)	622, 654
BpmI	CTGGAG	3 cut(s)	49, 876, 933
BpuEI	CTTGAG	3 cut(s)	544, 896, 1253
BpuMI	CCSGG	1 cut(s)	1197
BsaJI	CCNNGG	7 cut(s)	268, 430, 768, 853, 978, 1141, 1195
Bsc4I	CCNNNNNNNGG	3 cut(s)	177, 380, 1265
Bse1I	ACTGG	3 cut(s)	724, 916, 971
Bse3DI	GCAATG	1 cut(s)	172
BseBI	CCWGG	3 cut(s)	855, 1260, 1278
BseDI	CCNNGG	7 cut(s)	268, 430, 768, 853, 978, 1141, 1195
BseGI	GGATG	4 cut(s)	967, 1019, 1170, 1219
BseLI	CCNNNNNNNGG	3 cut(s)	177, 380, 1265
BseMI	GCAATG	1 cut(s)	172
BseMII	CTCAG	4 cut(s)	123, 167, 386, 1215
BseNI	ACTGG	3 cut(s)	724, 916, 971
BseRI	GAGGAG	1 cut(s)	235
BseXI	GCAGC	1 cut(s)	715
BsgI	GTGCAG	1 cut(s)	387
Bsh1236I	CGCG	1 cut(s)	58
BshFI	GGCC	1 cut(s)	576
BsiHKAI	GWGCWC	1 cut(s)	334
BsiSI	CCGG	3 cut(s)	39, 545, 1197
BslFI	GGGAC	1 cut(s)	1334
BslI	CCNNNNNNNGG	3 cut(s)	177, 380, 1265
BsmAI	GTCTC	1 cut(s)	1121
BsmFI	GGGAC	1 cut(s)	1334
BsmI	GAATGC	2 cut(s)	232, 1174
BsnI	GGCC	1 cut(s)	576
Bsp1286I	GDGCHC	2 cut(s)	294, 334
Bsp143I	GATC	3 cut(s)	398, 532, 661
BspACI	CCGC	5 cut(s)	58, 90, 105, 487, 991
BspANI	GGCC	1 cut(s)	576
BspCNI	CTCAG	4 cut(s)	124, 166, 387, 1216
BspFNI	CGCG	1 cut(s)	58
BspLI	GGNNCC	1 cut(s)	1187
BspPI	GGATC	1 cut(s)	527
BspTI	CTTAAG	1 cut(s)	1070
BsrDI	GCAATG	1 cut(s)	172
BsrI	ACTGG	3 cut(s)	724, 916, 971
BssECI	CCNNGG	7 cut(s)	268, 430, 768, 853, 978, 1141, 1195
BssMI	GATC	3 cut(s)	398, 532, 661
BssT1I	CCWWGG	5 cut(s)	268, 430, 768, 978, 1141
Bst2UI	CCWGG	3 cut(s)	855, 1260, 1278
Bst4CI	ACNGT	2 cut(s)	362, 934
BstAFI	CTTAAG	1 cut(s)	1070
BstC8I	GCNNGC	1 cut(s)	1051
BstDEI	CTNAG	4 cut(s)	132, 153, 395, 1224
BstEII	GGTNACC	1 cut(s)	1249
BstENI	CCTNNNNNAGG	1 cut(s)	378
BstF5I	GGATG	4 cut(s)	967, 1019, 1170, 1219
BstFNI	CGCG	1 cut(s)	58
BstHHI	GCGC	2 cut(s)	73, 232
BstKTI	GATC	3 cut(s)	401, 535, 664
BstMAI	GTCTC	1 cut(s)	1121
BstMBI	GATC	3 cut(s)	398, 532, 661
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 329
BstNI	CCWGG	3 cut(s)	855, 1260, 1278
BstNSI	RCATGY	1 cut(s)	1341
BstPI	GGTNACC	1 cut(s)	1249
BstSCI	CCNGG	4 cut(s)	853, 1195, 1258, 1276
BstUI	CGCG	1 cut(s)	58
BstV1I	GCAGC	1 cut(s)	715
BstV2I	GAAGAC	3 cut(s)	21, 143, 1244
BstX2I	RGATCY	2 cut(s)	398, 532
BstXI	CCANNNNNNTGG	2 cut(s)	1040, 1182
BstYI	RGATCY	2 cut(s)	398, 532
BsuRI	GGCC	1 cut(s)	576
BtsCI	GGATG	4 cut(s)	967, 1019, 1170, 1219
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	4 cut(s)	367, 392, 531, 909
Cac8I	GCNNGC	1 cut(s)	1051
CfoI	GCGC	2 cut(s)	73, 232
Cfr13I	GGNCC	5 cut(s)	60, 371, 574, 1186, 1274
CseI	GACGC	2 cut(s)	67, 109
CsiI	ACCWGGT	1 cut(s)	1276
Csp6I	GTAC	4 cut(s)	244, 625, 636, 1002
CviAII	CATG	6 cut(s)	175, 340, 628, 1209, 1244, 1338
CviQI	GTAC	4 cut(s)	244, 625, 636, 1002
DdeI	CTNAG	4 cut(s)	132, 153, 395, 1224
DpnI	GATC	3 cut(s)	400, 534, 663
DpnII	GATC	3 cut(s)	398, 532, 661
DraI	TTTAAA	1 cut(s)	115
DraIII	CACNNNGTG	1 cut(s)	1087
Eco130I	CCWWGG	5 cut(s)	268, 430, 768, 978, 1141
Eco24I	GRGCYC	1 cut(s)	294
Eco32I	GATATC	2 cut(s)	688, 882
Eco47I	GGWCC	4 cut(s)	60, 371, 1186, 1274
Eco57I	CTGAAG	1 cut(s)	476
Eco91I	GGTNACC	1 cut(s)	1249
EcoNI	CCTNNNNNAGG	1 cut(s)	378
EcoO65I	GGTNACC	1 cut(s)	1249
EcoRII	CCWGG	3 cut(s)	853, 1258, 1276
EcoRV	GATATC	2 cut(s)	688, 882
EcoT14I	CCWWGG	5 cut(s)	268, 430, 768, 978, 1141
EcoT38I	GRGCYC	1 cut(s)	294
ErhI	CCWWGG	5 cut(s)	268, 430, 768, 978, 1141
FaeI	CATG	6 cut(s)	178, 343, 631, 1212, 1247, 1341
FaqI	GGGAC	1 cut(s)	1334
FatI	CATG	6 cut(s)	174, 339, 627, 1208, 1243, 1337
FauI	CCCGC	2 cut(s)	97, 494
FauNDI	CATATG	2 cut(s)	805, 1177
FblI	GTMKAC	1 cut(s)	555
Fnu4HI	GCNGC	2 cut(s)	106, 729
FokI	GGATG	4 cut(s)	974, 1006, 1177, 1226
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	2 cut(s)	106, 729
FspAI	RTGCGCAY	1 cut(s)	231
FspBI	CTAG	2 cut(s)	216, 350
FspI	TGCGCA	1 cut(s)	231
GlaI	GCGC	2 cut(s)	72, 231
GluI	GCNGC	2 cut(s)	106, 729
GsuI	CTGGAG	3 cut(s)	49, 876, 933
HaeIII	GGCC	1 cut(s)	576
HapII	CCGG	3 cut(s)	39, 545, 1197
HgaI	GACGC	2 cut(s)	67, 109
HhaI	GCGC	2 cut(s)	73, 232
Hin1II	CATG	6 cut(s)	178, 343, 631, 1212, 1247, 1341
Hin6I	GCGC	2 cut(s)	71, 230
HinP1I	GCGC	2 cut(s)	71, 230
HindIII	AAGCTT	2 cut(s)	15, 182
HpaII	CCGG	3 cut(s)	39, 545, 1197
HphI	GGTGA	6 cut(s)	169, 290, 395, 696, 1099, 1295
Hpy166II	GTNNAC	7 cut(s)	345, 556, 636, 704, 833, 930, 1189
Hpy188I	TCNGA	5 cut(s)	463, 495, 594, 823, 961
Hpy188III	TCNNGA	7 cut(s)	66, 131, 206, 299, 641, 659, 1232
Hpy8I	GTNNAC	7 cut(s)	345, 556, 636, 704, 833, 930, 1189
Hpy99I	CGWCG	2 cut(s)	83, 125
HpyAV	CCTTC	2 cut(s)	500, 1280
HpyCH4III	ACNGT	2 cut(s)	362, 934
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 329
HpyF3I	CTNAG	4 cut(s)	132, 153, 395, 1224
Hsp92II	CATG	6 cut(s)	178, 343, 631, 1212, 1247, 1341
HspAI	GCGC	2 cut(s)	71, 230
Kzo9I	GATC	3 cut(s)	398, 532, 661
LmnI	GCTCC	3 cut(s)	842, 857, 1177
Lsp1109I	GCAGC	1 cut(s)	715
LweI	GCATC	2 cut(s)	241, 1028
MabI	ACCWGGT	1 cut(s)	1276
MaeI	CTAG	2 cut(s)	216, 350
MaeIII	GTNAC	5 cut(s)	278, 356, 476, 1249, 1313
MalI	GATC	3 cut(s)	400, 534, 663
MboI	GATC	3 cut(s)	398, 532, 661
MboII	GAAGA	5 cut(s)	21, 24, 148, 455, 1249
MflI	RGATCY	2 cut(s)	398, 532
MhlI	GDGCHC	2 cut(s)	294, 334
MluCI	AATT	6 cut(s)	46, 261, 273, 318, 1093, 1355
MlyI	GAGTC	5 cut(s)	19, 145, 169, 551, 1234
MseI	TTAA	3 cut(s)	114, 1071, 1134
MslI	CAYNNNNRTG	1 cut(s)	1180
MspCI	CTTAAG	1 cut(s)	1070
MspI	CCGG	3 cut(s)	39, 545, 1197
MspR9I	CCNGG	4 cut(s)	855, 1197, 1260, 1278
Mva1269I	GAATGC	2 cut(s)	232, 1174
MvaI	CCWGG	3 cut(s)	855, 1260, 1278
MvnI	CGCG	1 cut(s)	58
MwoI	GCNNNNNNNGC	2 cut(s)	89, 329
NciI	CCSGG	1 cut(s)	1197
NdeI	CATATG	2 cut(s)	805, 1177
NdeII	GATC	3 cut(s)	398, 532, 661
NlaIII	CATG	6 cut(s)	178, 343, 631, 1212, 1247, 1341
NlaIV	GGNNCC	1 cut(s)	1187
NmuCI	GTSAC	3 cut(s)	278, 476, 1313
NsbI	TGCGCA	1 cut(s)	231
NspI	RCATGY	1 cut(s)	1341
PctI	GAATGC	2 cut(s)	232, 1174
PfeI	GAWTC	6 cut(s)	496, 797, 906, 937, 1228, 1347
PkrI	GCNGC	2 cut(s)	107, 730
PleI	GAGTC	5 cut(s)	18, 145, 168, 551, 1234
PpsI	GAGTC	5 cut(s)	18, 145, 168, 551, 1234
Psp6I	CCWGG	3 cut(s)	853, 1258, 1276
PspEI	GGTNACC	1 cut(s)	1249
PspGI	CCWGG	3 cut(s)	853, 1258, 1276
PspN4I	GGNNCC	1 cut(s)	1187
PspPI	GGNCC	5 cut(s)	60, 371, 574, 1186, 1274
PsuI	RGATCY	2 cut(s)	398, 532
RsaI	GTAC	4 cut(s)	245, 626, 637, 1003
RsaNI	GTAC	4 cut(s)	244, 625, 636, 1002
RseI	CAYNNNNRTG	1 cut(s)	1180
SaqAI	TTAA	3 cut(s)	114, 1071, 1134
SatI	GCNGC	2 cut(s)	106, 729
Sau3AI	GATC	3 cut(s)	398, 532, 661
Sau96I	GGNCC	5 cut(s)	60, 371, 574, 1186, 1274
SchI	GAGTC	5 cut(s)	19, 145, 169, 551, 1234
ScrFI	CCNGG	4 cut(s)	855, 1197, 1260, 1278
SduI	GDGCHC	2 cut(s)	294, 334
SexAI	ACCWGGT	1 cut(s)	1276
SfaNI	GCATC	2 cut(s)	241, 1028
SinI	GGWCC	4 cut(s)	60, 371, 1186, 1274
SmiMI	CAYNNNNRTG	1 cut(s)	1180
SmlI	CTYRAG	4 cut(s)	559, 875, 1070, 1232
SmoI	CTYRAG	4 cut(s)	559, 875, 1070, 1232
Sse9I	AATT	6 cut(s)	46, 261, 273, 318, 1093, 1355
SsiI	CCGC	5 cut(s)	58, 90, 105, 487, 991
SspMI	CTAG	2 cut(s)	216, 350
StyD4I	CCNGG	4 cut(s)	853, 1195, 1258, 1276
StyI	CCWWGG	5 cut(s)	268, 430, 768, 978, 1141
TaaI	ACNGT	2 cut(s)	362, 934
TaqI	TCGA	2 cut(s)	642, 679
TasI	AATT	6 cut(s)	46, 261, 273, 318, 1093, 1355
TatI	WGTACW	3 cut(s)	624, 635, 1001
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	6 cut(s)	496, 797, 906, 937, 1228, 1347
Tru1I	TTAA	3 cut(s)	114, 1071, 1134
Tru9I	TTAA	3 cut(s)	114, 1071, 1134
TscAI	CASTG	4 cut(s)	367, 399, 531, 916
TseFI	GTSAC	3 cut(s)	278, 476, 1313
TseI	GCWGC	1 cut(s)	728
Tsp45I	GTSAC	3 cut(s)	278, 476, 1313
TspDTI	ATGAA	2 cut(s)	1181, 1282
TspRI	CASTG	4 cut(s)	367, 399, 531, 916
Vha464I	CTTAAG	1 cut(s)	1070
VpaK11BI	GGWCC	4 cut(s)	60, 371, 1186, 1274
XagI	CCTNNNNNAGG	1 cut(s)	378
XapI	RAATTY	1 cut(s)	1093
XceI	RCATGY	1 cut(s)	1341
XmiI	GTMKAC	1 cut(s)	555
XspI	CTAG	2 cut(s)	216, 350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.