MD02G1010200.v1.1

ABC transporter I family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0012194
Physical Location & Seq
Forward (+)
672132 .. 674126
1995 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1010200.v1.1.491

Sequence Viewer

Length: 687 bp
ATGTCTATCAGAAAGCCTCCGCTTCCCCGTCTCCTTCTCAACAATGTCTCTTGCATGAGGAATGCCCAACAAATCTTGAGACACGTAAATGCCTCGGTTCACGATGGCGGAGCACTTGTGCTGATGGGCACTAATGGCTCGGGCAAGACTACCTTCCTGCATATGTTAGCAGGATTTTCTCGTCCTTCTGCTGGTCAGGTCCTGTGGAACGGGCACGACATCACTGACTCAGGAGTTTTCCACCAGTACAAGCTTCAACTTAACTGGCTCTCCCTTAAAGATGCAGTGAAAGAGAAGTTCACAGTTCTCGACAATGTTCAGTGGTTTGAGGTTCTCGAAGGCAAGGAAGGGAATTCACTGCCGGCTTTGGAGCTGATGGGGCTCGGGAGACTGGCAAAGGACAAAGCGAGAATGCTGTCAATGGGGCAGCGGAAAAGGCTGCAGCTCGCAAGGCTTCTGGCAATCGATAGGCCAATTTGGTTGCTTGATGAGCCTTCGGTTGCATTGGACACTGAAGGGACAAAGCTGCTCGAGTATATCATCGCGGAGCATAGGAAGAAAGGTGGAATTGTGATTGTGGCAACACATCTGCCAATTGACATTGAAGATGCGACGTATTTGAGGCTGCCTCCGAGGTTCCCGAGGAGGATGACTCTCGTAGACATGCTCGATCGTTCGGATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran

Protein Analysis

229

Amino Acids

25.67

Weight (kDa)

9.55

Isoelectric Point (pI)

35.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 26 - 166 2.3e-27 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63270
fragaria_vesca FvH4_1g01200 FvH4_1g01200 FvH4_1g01210
malus_domestica MD02G1010200.v1.1
prunus_persica Prupe.7G259900_v2.0.a1
pyrus_communis pycom02g00890 pycom15g13920
rosa_chinensis RchiOBHm_Chr2g0086001
rosa_laevigata RLG00000015733
rosa_multiflora Rmu_sc0023469.1_g000002
rosa_roxburghii Rroxscaffold_2G00154860
rosa_rugosa Rorug01G0464900 Rorug05G0522600
rosa_samantha Rh2AG014200 Rh2BG014700 Rh2CG015300 Rh2DG016600
rosa_wichuraiana Rw2G001260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 660
AccII CGCG 1 cut(s) 545
AciI CCGC 4 cut(s) 20, 108, 430, 545
AcsI RAATTY 1 cut(s) 352
AcuI CTGAAG 1 cut(s) 534
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 1 cut(s) 191
AflIII ACRYGT 1 cut(s) 82
AgsI TTSAA 2 cut(s) 257, 605
AluBI AGCT 4 cut(s) 253, 373, 445, 526
AluI AGCT 4 cut(s) 253, 373, 445, 526
Alw21I GWGCWC 1 cut(s) 115
Alw26I GTCTC 4 cut(s) 35, 52, 73, 382
AlwNI CAGNNNCTG 1 cut(s) 202
Ama87I CYCGRG 4 cut(s) 139, 383, 530, 640
AoxI GGCC 1 cut(s) 470
ApeKI GCWGC 5 cut(s) 427, 439, 442, 526, 625
ApoI RAATTY 1 cut(s) 352
AspS9I GGNCC 1 cut(s) 199
AvaI CYCGRG 4 cut(s) 139, 383, 530, 640
AvaII GGWCC 1 cut(s) 199
BaeGI GKGCMC 2 cut(s) 131, 216
BanII GRGCYC 1 cut(s) 384
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 5 cut(s) 426, 439, 454, 513, 612
BccI CCATC 3 cut(s) 98, 118, 370
BcoDI GTCTC 4 cut(s) 35, 52, 73, 382
BfmI CTRYAG 1 cut(s) 440
BisI GCNGC 5 cut(s) 428, 440, 443, 527, 626
BlsI GCNGC 5 cut(s) 429, 441, 444, 528, 627
Bme18I GGWCC 1 cut(s) 199
BmeT110I CYCGRG 4 cut(s) 139, 383, 530, 640
BmgT120I GGNCC 1 cut(s) 199
BmiI GGNNCC 1 cut(s) 638
BmsI GCATC 2 cut(s) 271, 598
BplI GAGNNNNNCTC 4 cut(s) 613, 645, 637, 669
BpuEI CTTGAG 1 cut(s) 97
Bsa29I ATCGAT 1 cut(s) 465
BsaAI YACGTR 1 cut(s) 85
BsaJI CCNNGG 3 cut(s) 93, 632, 641
BsaXI ACNNNNNCTCC 4 cut(s) 102, 132, 254, 284
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse118I RCCGGY 1 cut(s) 361
Bse1I ACTGG 3 cut(s) 244, 269, 396
BseCI ATCGAT 1 cut(s) 465
BseDI CCNNGG 3 cut(s) 93, 632, 641
BseGI GGATG 1 cut(s) 654
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMII CTCAG 1 cut(s) 243
BseNI ACTGG 3 cut(s) 244, 269, 396
BseRI GAGGAG 1 cut(s) 658
BseSI GKGCMC 2 cut(s) 131, 216
BseXI GCAGC 5 cut(s) 426, 439, 454, 513, 612
Bsh1236I CGCG 1 cut(s) 545
Bsh1285I CGRYCG 1 cut(s) 673
BshFI GGCC 1 cut(s) 472
BshVI ATCGAT 1 cut(s) 465
BsiEI CGRYCG 1 cut(s) 673
BsiHKAI GWGCWC 1 cut(s) 115
BsiHKCI CYCGRG 4 cut(s) 139, 383, 530, 640
BsiSI CCGG 1 cut(s) 362
BslFI GGGAC 1 cut(s) 532
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 4 cut(s) 35, 52, 73, 382
BsmBI CGTCTC 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 532
BsmI GAATGC 2 cut(s) 67, 417
BsnI GGCC 1 cut(s) 472
BsoBI CYCGRG 4 cut(s) 139, 383, 530, 640
Bsp1286I GDGCHC 4 cut(s) 115, 131, 216, 384
Bsp143I GATC 1 cut(s) 670
BspACI CCGC 4 cut(s) 20, 108, 430, 545
BspANI GGCC 1 cut(s) 472
BspCNI CTCAG 1 cut(s) 242
BspDI ATCGAT 1 cut(s) 465
BspFNI CGCG 1 cut(s) 545
BspLI GGNNCC 1 cut(s) 638
BspMAI CTGCAG 1 cut(s) 444
BsrFI RCCGGY 1 cut(s) 361
BsrI ACTGG 3 cut(s) 244, 269, 396
BssAI RCCGGY 1 cut(s) 361
BssECI CCNNGG 3 cut(s) 93, 632, 641
BssMI GATC 1 cut(s) 670
Bst4CI ACNGT 1 cut(s) 304
BstBAI YACGTR 1 cut(s) 85
BstC8I GCNNGC 2 cut(s) 363, 447
BstDEI CTNAG 1 cut(s) 229
BstF5I GGATG 1 cut(s) 654
BstFNI CGCG 1 cut(s) 545
BstKTI GATC 1 cut(s) 673
BstMAI GTCTC 4 cut(s) 35, 52, 73, 382
BstMBI GATC 1 cut(s) 670
BstMCI CGRYCG 1 cut(s) 673
BstMWI GCNNNNNNNGC 5 cut(s) 135, 379, 436, 451, 490
BstNSI RCATGY 1 cut(s) 667
BstSFI CTRYAG 1 cut(s) 440
BstSLI GKGCMC 2 cut(s) 131, 216
BstUI CGCG 1 cut(s) 545
BstV1I GCAGC 5 cut(s) 426, 439, 454, 513, 612
Bsu15I ATCGAT 1 cut(s) 465
BsuRI GGCC 1 cut(s) 472
BsuTUI ATCGAT 1 cut(s) 465
BtgZI GCGATG 1 cut(s) 526
BtsCI GGATG 1 cut(s) 654
BtsI GCAGTG 2 cut(s) 291, 356
BtsIMutI CAGTG 5 cut(s) 222, 291, 326, 356, 510
Cac8I GCNNGC 2 cut(s) 363, 447
CaiI CAGNNNCTG 1 cut(s) 202
Cfr10I RCCGGY 1 cut(s) 361
Cfr13I GGNCC 1 cut(s) 199
ClaI ATCGAT 1 cut(s) 465
Csp6I GTAC 1 cut(s) 247
CviAII CATG 2 cut(s) 55, 664
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 1 cut(s) 229
DpnI GATC 1 cut(s) 672
DpnII GATC 1 cut(s) 670
EciI GGCGGA 1 cut(s) 123
Eco24I GRGCYC 1 cut(s) 384
Eco47I GGWCC 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 534
Eco88I CYCGRG 4 cut(s) 139, 383, 530, 640
EcoO109I RGGNCCY 1 cut(s) 199
EcoRI GAATTC 1 cut(s) 352
EcoT38I GRGCYC 1 cut(s) 384
Esp3I CGTCTC 1 cut(s) 35
FaeI CATG 2 cut(s) 58, 667
FaiI YATR 6 cut(s) 56, 162, 164, 537, 552, 665
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FaqI GGGAC 1 cut(s) 532
FatI CATG 2 cut(s) 54, 663
FauNDI CATATG 1 cut(s) 162
FblI GTMKAC 1 cut(s) 660
Fnu4HI GCNGC 5 cut(s) 428, 440, 443, 527, 626
FokI GGATG 1 cut(s) 661
FriOI GRGCYC 1 cut(s) 384
Fsp4HI GCNGC 5 cut(s) 428, 440, 443, 527, 626
GluI GCNGC 5 cut(s) 428, 440, 443, 527, 626
HaeIII GGCC 1 cut(s) 472
HapII CCGG 1 cut(s) 362
Hin1II CATG 2 cut(s) 58, 667
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 2 cut(s) 227, 652
HpaII CCGG 1 cut(s) 362
Hpy166II GTNNAC 3 cut(s) 100, 300, 661
Hpy188I TCNGA 3 cut(s) 11, 633, 679
Hpy188III TCNNGA 7 cut(s) 76, 101, 231, 308, 335, 385, 640
Hpy8I GTNNAC 3 cut(s) 100, 300, 661
Hpy99I CGWCG 1 cut(s) 616
HpyAV CCTTC 7 cut(s) 44, 163, 195, 332, 341, 504, 509
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4IV ACGT 2 cut(s) 84, 614
HpyCH4V TGCA 5 cut(s) 54, 160, 284, 442, 503
HpyF10VI GCNNNNNNNGC 5 cut(s) 135, 379, 436, 451, 490
HpyF3I CTNAG 1 cut(s) 229
HpySE526I ACGT 2 cut(s) 84, 614
Hsp92II CATG 2 cut(s) 58, 667
KroI GCCGGC 1 cut(s) 361
KroNI GCCGGC 1 cut(s) 363
Kzo9I GATC 1 cut(s) 670
LmnI GCTCC 3 cut(s) 110, 370, 547
Lsp1109I GCAGC 5 cut(s) 426, 439, 454, 513, 612
LweI GCATC 2 cut(s) 271, 598
MaeII ACGT 2 cut(s) 84, 614
MalI GATC 1 cut(s) 672
MboI GATC 1 cut(s) 670
MboII GAAGA 2 cut(s) 568, 617
MfeI CAATTG 1 cut(s) 594
MhlI GDGCHC 4 cut(s) 115, 131, 216, 384
MluCI AATT 4 cut(s) 352, 474, 567, 594
MlyI GAGTC 2 cut(s) 221, 646
MnlI CCTC 9 cut(s) 27, 51, 103, 322, 615, 627, 636, 639, 639
MroNI GCCGGC 1 cut(s) 361
MseI TTAA 2 cut(s) 261, 276
MslI CAYNNNNRTG 1 cut(s) 87
MspA1I CMGCKG 1 cut(s) 430
MspI CCGG 1 cut(s) 362
MunI CAATTG 1 cut(s) 594
Mva1269I GAATGC 2 cut(s) 67, 417
MvnI CGCG 1 cut(s) 545
MwoI GCNNNNNNNGC 5 cut(s) 135, 379, 436, 451, 490
NaeI GCCGGC 1 cut(s) 363
NdeI CATATG 1 cut(s) 162
NdeII GATC 1 cut(s) 670
NgoMIV GCCGGC 1 cut(s) 361
NlaIII CATG 2 cut(s) 58, 667
NlaIV GGNNCC 1 cut(s) 638
NspI RCATGY 1 cut(s) 667
PaeR7I CTCGAG 1 cut(s) 530
PctI GAATGC 2 cut(s) 67, 417
PdiI GCCGGC 1 cut(s) 363
PkrI GCNGC 5 cut(s) 429, 441, 444, 528, 627
Ple19I CGATCG 1 cut(s) 673
PleI GAGTC 2 cut(s) 221, 646
PpsI GAGTC 2 cut(s) 221, 646
Ppu21I YACGTR 1 cut(s) 85
PpuMI RGGWCCY 1 cut(s) 199
Psp5II RGGWCCY 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 638
PspPI GGNCC 1 cut(s) 199
PspPPI RGGWCCY 1 cut(s) 199
PspXI VCTCGAGB 1 cut(s) 530
PstI CTGCAG 1 cut(s) 444
PstNI CAGNNNCTG 1 cut(s) 202
PvuI CGATCG 1 cut(s) 673
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 1 cut(s) 87
SaqAI TTAA 2 cut(s) 261, 276
SatI GCNGC 5 cut(s) 428, 440, 443, 527, 626
Sau3AI GATC 1 cut(s) 670
Sau96I GGNCC 1 cut(s) 199
SchI GAGTC 2 cut(s) 221, 646
SduI GDGCHC 4 cut(s) 115, 131, 216, 384
SfaNI GCATC 2 cut(s) 271, 598
SfcI CTRYAG 1 cut(s) 440
Sfr274I CTCGAG 1 cut(s) 530
SinI GGWCC 1 cut(s) 199
SlaI CTCGAG 1 cut(s) 530
SmiMI CAYNNNNRTG 1 cut(s) 87
SmlI CTYRAG 2 cut(s) 76, 530
SmoI CTYRAG 2 cut(s) 76, 530
Sse9I AATT 4 cut(s) 352, 474, 567, 594
SsiI CCGC 4 cut(s) 20, 108, 430, 545
TaaI ACNGT 1 cut(s) 304
TaiI ACGT 2 cut(s) 87, 617
TaqI TCGA 5 cut(s) 309, 336, 465, 531, 669
TasI AATT 4 cut(s) 352, 474, 567, 594
TatI WGTACW 1 cut(s) 246
Tru1I TTAA 2 cut(s) 261, 276
Tru9I TTAA 2 cut(s) 261, 276
TscAI CASTG 5 cut(s) 229, 291, 326, 363, 517
TseI GCWGC 5 cut(s) 427, 439, 442, 526, 625
TspRI CASTG 5 cut(s) 229, 291, 326, 363, 517
VpaK11BI GGWCC 1 cut(s) 199
XapI RAATTY 1 cut(s) 352
XceI RCATGY 1 cut(s) 667
XhoI CTCGAG 1 cut(s) 530
XmiI GTMKAC 1 cut(s) 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.