pycom15g13920

ABC transporter I family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0012194
Physical Location & Seq
Forward (+)
9491227 .. 9491913
687 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g13920.1

Sequence Viewer

Length: 687 bp
ATGTCTCTCAGAAAGCCTCCGCTTCCCCGTCTCCTTCTCAACAATGTCTCTTGCATGAGGAATGCCCAACAAATCTTGAGACACGTAAATGCCTCGGTCCATGATGGTGGAGCACTTGTGCTGATGGGCACTAATGGCTCGGGCAAGACTACCTTCCTGCGTATGTTAGCAGGATTTTCTCGTCCTTCTGCTGGTCAGGTCCTGTGGAACGGGCACGACATCACTGACTCAGGAGTTTTCCACCAGTATAAGCTTCAACTTAACTGGCTCTCCCTTAAAGATGCGGTGAAAGAGAAGTTCACAGTTCTCGACAATGTTCAGTGGTTTGAAGTTCTCGAAGGCAAGGAAGGGAATTCACTGCCGGCTTTGGAGCTAATGGGGCTTGGGAGACTGGCAAAGGAGAAAGCGAGAATGCTGTCAATGGGGCAGCGGAAAAGGCTGCAACTCGCGAGGCTGCTGGCAATTGACAGGCCCATTTGGTTGCTTGACGAGCCTTCGGTTGCACTGGACACTGAGGGCACAAGGCTGCTCGAGTATATCATCGGAGAGCATAGGAAGAAAGGCGGGATAGTGATTGTGGCAACACATCTGCCAATTGACATTGAAGATGTGACGTATTTGAGGCTGCCTCCAAGGTTCCCGAGGAGGATGACTCTAGTAGATATGCTTGATCGTTCGGATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran

Protein Analysis

229

Amino Acids

25.74

Weight (kDa)

9.71

Isoelectric Point (pI)

37.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 26 - 166 8.8e-28 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63270
fragaria_vesca FvH4_1g01200 FvH4_1g01200 FvH4_1g01210
malus_domestica MD02G1010200.v1.1
prunus_persica Prupe.7G259900_v2.0.a1
pyrus_communis pycom02g00890 pycom15g13920
rosa_chinensis RchiOBHm_Chr2g0086001
rosa_laevigata RLG00000015733
rosa_multiflora Rmu_sc0023469.1_g000002
rosa_roxburghii Rroxscaffold_2G00154860
rosa_rugosa Rorug01G0464900 Rorug05G0522600
rosa_samantha Rh2AG014200 Rh2BG014700 Rh2CG015300 Rh2DG016600
rosa_wichuraiana Rw2G001260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 449
AciI CCGC 4 cut(s) 20, 284, 430, 564
AcsI RAATTY 1 cut(s) 352
AfiI CCNNNNNNNGG 1 cut(s) 191
AflIII ACRYGT 1 cut(s) 82
AgsI TTSAA 3 cut(s) 257, 329, 605
AluBI AGCT 2 cut(s) 253, 373
AluI AGCT 2 cut(s) 253, 373
Alw21I GWGCWC 1 cut(s) 115
Alw26I GTCTC 5 cut(s) 9, 35, 52, 73, 382
AlwNI CAGNNNCTG 1 cut(s) 202
Ama87I CYCGRG 3 cut(s) 139, 530, 640
AoxI GGCC 1 cut(s) 470
ApeKI GCWGC 5 cut(s) 427, 439, 454, 526, 625
ApoI RAATTY 1 cut(s) 352
AspS9I GGNCC 3 cut(s) 97, 199, 471
AsuHPI GGTGA 1 cut(s) 298
AvaI CYCGRG 3 cut(s) 139, 530, 640
AvaII GGWCC 2 cut(s) 97, 199
BaeGI GKGCMC 3 cut(s) 131, 216, 521
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 5 cut(s) 426, 439, 441, 513, 612
BccI CCATC 2 cut(s) 98, 118
BcoDI GTCTC 5 cut(s) 9, 35, 52, 73, 382
BfaI CTAG 1 cut(s) 656
BisI GCNGC 5 cut(s) 428, 440, 455, 527, 626
BlsI GCNGC 5 cut(s) 429, 441, 456, 528, 627
Bme18I GGWCC 2 cut(s) 97, 199
BmeT110I CYCGRG 3 cut(s) 139, 530, 640
BmgT120I GGNCC 3 cut(s) 97, 199, 471
BmiI GGNNCC 1 cut(s) 638
BmsI GCATC 1 cut(s) 271
BplI GAGNNNNNCTC 4 cut(s) 613, 645, 637, 669
BpuEI CTTGAG 1 cut(s) 97
BsaAI YACGTR 1 cut(s) 85
BsaJI CCNNGG 3 cut(s) 93, 632, 641
BsaXI ACNNNNNCTCC 4 cut(s) 102, 132, 254, 284
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse118I RCCGGY 1 cut(s) 361
Bse1I ACTGG 4 cut(s) 244, 269, 396, 510
BseDI CCNNGG 3 cut(s) 93, 632, 641
BseGI GGATG 1 cut(s) 654
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMII CTCAG 3 cut(s) 22, 243, 504
BseNI ACTGG 4 cut(s) 244, 269, 396, 510
BseRI GAGGAG 1 cut(s) 658
BseSI GKGCMC 3 cut(s) 131, 216, 521
BseXI GCAGC 5 cut(s) 426, 439, 441, 513, 612
Bsh1236I CGCG 1 cut(s) 449
BshFI GGCC 1 cut(s) 472
BsiHKAI GWGCWC 1 cut(s) 115
BsiHKCI CYCGRG 3 cut(s) 139, 530, 640
BsiSI CCGG 1 cut(s) 362
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 5 cut(s) 9, 35, 52, 73, 382
BsmBI CGTCTC 1 cut(s) 35
BsmI GAATGC 2 cut(s) 67, 417
BsnI GGCC 1 cut(s) 472
BsoBI CYCGRG 3 cut(s) 139, 530, 640
Bsp1286I GDGCHC 4 cut(s) 115, 131, 216, 521
Bsp143I GATC 1 cut(s) 670
Bsp68I TCGCGA 1 cut(s) 449
BspACI CCGC 4 cut(s) 20, 284, 430, 564
BspANI GGCC 1 cut(s) 472
BspCNI CTCAG 3 cut(s) 21, 242, 505
BspFNI CGCG 1 cut(s) 449
BspLI GGNNCC 1 cut(s) 638
BsrFI RCCGGY 1 cut(s) 361
BsrI ACTGG 4 cut(s) 244, 269, 396, 510
BssAI RCCGGY 1 cut(s) 361
BssECI CCNNGG 3 cut(s) 93, 632, 641
BssMI GATC 1 cut(s) 670
BssT1I CCWWGG 1 cut(s) 632
Bst4CI ACNGT 1 cut(s) 304
BstBAI YACGTR 1 cut(s) 85
BstC8I GCNNGC 2 cut(s) 363, 459
BstDEI CTNAG 3 cut(s) 8, 229, 513
BstF5I GGATG 1 cut(s) 654
BstFNI CGCG 1 cut(s) 449
BstKTI GATC 1 cut(s) 673
BstMAI GTCTC 5 cut(s) 9, 35, 52, 73, 382
BstMBI GATC 1 cut(s) 670
BstMWI GCNNNNNNNGC 4 cut(s) 135, 379, 436, 490
BstSLI GKGCMC 3 cut(s) 131, 216, 521
BstUI CGCG 1 cut(s) 449
BstV1I GCAGC 5 cut(s) 426, 439, 441, 513, 612
BstXI CCANNNNNNTGG 1 cut(s) 107
BsuRI GGCC 1 cut(s) 472
BtsCI GGATG 1 cut(s) 654
BtsI GCAGTG 1 cut(s) 356
BtsIMutI CAGTG 5 cut(s) 222, 326, 356, 503, 510
BtuMI TCGCGA 1 cut(s) 449
Cac8I GCNNGC 2 cut(s) 363, 459
CaiI CAGNNNCTG 1 cut(s) 202
Cfr10I RCCGGY 1 cut(s) 361
Cfr13I GGNCC 3 cut(s) 97, 199, 471
CviAII CATG 2 cut(s) 55, 101
DdeI CTNAG 3 cut(s) 8, 229, 513
DpnI GATC 1 cut(s) 672
DpnII GATC 1 cut(s) 670
Eco130I CCWWGG 1 cut(s) 632
Eco47I GGWCC 2 cut(s) 97, 199
Eco88I CYCGRG 3 cut(s) 139, 530, 640
EcoO109I RGGNCCY 1 cut(s) 199
EcoRI GAATTC 1 cut(s) 352
EcoT14I CCWWGG 1 cut(s) 632
ErhI CCWWGG 1 cut(s) 632
Esp3I CGTCTC 1 cut(s) 35
FaeI CATG 2 cut(s) 58, 104
FaiI YATR 7 cut(s) 56, 102, 164, 249, 537, 552, 665
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FatI CATG 2 cut(s) 54, 100
FauI CCCGC 1 cut(s) 557
Fnu4HI GCNGC 5 cut(s) 428, 440, 455, 527, 626
FokI GGATG 1 cut(s) 661
Fsp4HI GCNGC 5 cut(s) 428, 440, 455, 527, 626
FspBI CTAG 1 cut(s) 656
GluI GCNGC 5 cut(s) 428, 440, 455, 527, 626
HaeIII GGCC 1 cut(s) 472
HapII CCGG 1 cut(s) 362
Hin1II CATG 2 cut(s) 58, 104
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 2 cut(s) 227, 652
HpaII CCGG 1 cut(s) 362
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 1 cut(s) 300
Hpy188I TCNGA 3 cut(s) 11, 545, 679
Hpy188III TCNNGA 6 cut(s) 76, 231, 308, 335, 448, 640
Hpy8I GTNNAC 1 cut(s) 300
HpyAV CCTTC 6 cut(s) 44, 163, 195, 332, 341, 504
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4IV ACGT 2 cut(s) 84, 614
HpyCH4V TGCA 3 cut(s) 54, 442, 503
HpyF10VI GCNNNNNNNGC 4 cut(s) 135, 379, 436, 490
HpyF3I CTNAG 3 cut(s) 8, 229, 513
HpySE526I ACGT 2 cut(s) 84, 614
Hsp92II CATG 2 cut(s) 58, 104
KroI GCCGGC 1 cut(s) 361
KroNI GCCGGC 1 cut(s) 363
Kzo9I GATC 1 cut(s) 670
LmnI GCTCC 2 cut(s) 110, 370
Lsp1109I GCAGC 5 cut(s) 426, 439, 441, 513, 612
LweI GCATC 1 cut(s) 271
MaeI CTAG 1 cut(s) 656
MaeII ACGT 2 cut(s) 84, 614
MaeIII GTNAC 1 cut(s) 610
MalI GATC 1 cut(s) 672
MboI GATC 1 cut(s) 670
MboII GAAGA 2 cut(s) 568, 617
MfeI CAATTG 2 cut(s) 462, 594
MhlI GDGCHC 4 cut(s) 115, 131, 216, 521
MluCI AATT 3 cut(s) 352, 462, 594
MlyI GAGTC 2 cut(s) 221, 646
MnlI CCTC 9 cut(s) 27, 51, 103, 444, 508, 615, 636, 639, 639
MroNI GCCGGC 1 cut(s) 361
MseI TTAA 2 cut(s) 261, 276
MslI CAYNNNNRTG 2 cut(s) 87, 105
MspA1I CMGCKG 1 cut(s) 430
MspI CCGG 1 cut(s) 362
MunI CAATTG 2 cut(s) 462, 594
Mva1269I GAATGC 2 cut(s) 67, 417
MvnI CGCG 1 cut(s) 449
MwoI GCNNNNNNNGC 4 cut(s) 135, 379, 436, 490
NaeI GCCGGC 1 cut(s) 363
NdeII GATC 1 cut(s) 670
NgoMIV GCCGGC 1 cut(s) 361
NlaIII CATG 2 cut(s) 58, 104
NlaIV GGNNCC 1 cut(s) 638
NmuCI GTSAC 1 cut(s) 610
NruI TCGCGA 1 cut(s) 449
PaeR7I CTCGAG 1 cut(s) 530
PctI GAATGC 2 cut(s) 67, 417
PdiI GCCGGC 1 cut(s) 363
PkrI GCNGC 5 cut(s) 429, 441, 456, 528, 627
PleI GAGTC 2 cut(s) 221, 646
PpsI GAGTC 2 cut(s) 221, 646
Ppu21I YACGTR 1 cut(s) 85
PpuMI RGGWCCY 1 cut(s) 199
Psp5II RGGWCCY 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 638
PspPI GGNCC 3 cut(s) 97, 199, 471
PspPPI RGGWCCY 1 cut(s) 199
PspXI VCTCGAGB 1 cut(s) 530
PstNI CAGNNNCTG 1 cut(s) 202
RruI TCGCGA 1 cut(s) 449
RseI CAYNNNNRTG 2 cut(s) 87, 105
SaqAI TTAA 2 cut(s) 261, 276
SatI GCNGC 5 cut(s) 428, 440, 455, 527, 626
Sau3AI GATC 1 cut(s) 670
Sau96I GGNCC 3 cut(s) 97, 199, 471
SchI GAGTC 2 cut(s) 221, 646
SduI GDGCHC 4 cut(s) 115, 131, 216, 521
SetI ASST 7 cut(s) 87, 155, 201, 255, 375, 617, 638
SfaNI GCATC 1 cut(s) 271
Sfr274I CTCGAG 1 cut(s) 530
SinI GGWCC 2 cut(s) 97, 199
SlaI CTCGAG 1 cut(s) 530
SmiMI CAYNNNNRTG 2 cut(s) 87, 105
SmlI CTYRAG 2 cut(s) 76, 530
SmoI CTYRAG 2 cut(s) 76, 530
Sse9I AATT 3 cut(s) 352, 462, 594
SsiI CCGC 4 cut(s) 20, 284, 430, 564
SspMI CTAG 1 cut(s) 656
StyI CCWWGG 1 cut(s) 632
TaaI ACNGT 1 cut(s) 304
TaiI ACGT 2 cut(s) 87, 617
TaqI TCGA 3 cut(s) 309, 336, 531
TaqII GACCGA 1 cut(s) 85
TasI AATT 3 cut(s) 352, 462, 594
Tru1I TTAA 2 cut(s) 261, 276
Tru9I TTAA 2 cut(s) 261, 276
TscAI CASTG 5 cut(s) 229, 326, 363, 510, 517
TseFI GTSAC 1 cut(s) 610
TseI GCWGC 5 cut(s) 427, 439, 454, 526, 625
Tsp45I GTSAC 1 cut(s) 610
TspRI CASTG 5 cut(s) 229, 326, 363, 510, 517
VpaK11BI GGWCC 2 cut(s) 97, 199
XapI RAATTY 1 cut(s) 352
XhoI CTCGAG 1 cut(s) 530
XspI CTAG 1 cut(s) 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.