Rh2CG015300

ABC transporter I family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0012194
Physical Location & Seq
Forward (+)
1236330 .. 1237910
1581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG015300.1

Sequence Viewer

Length: 687 bp
ATGTCTCTCCGAAAGCCCCCGCTCCCTCGTCTCCTCCTCAACAATGTCTCTTGCATGAGGAATGCTCAGCAGATCTTGCGACATGTAAATGCCACAGTTCACGACGGTGGAGCACTTGTGCTGATGGGCACCAATGGCTCGGGCAAGACTACCTTCCTGCGCATGTTAGCTGGCTTTTCTAAGCCTTCTGCTGGCCAGGTCCTCTGGAATGGTCACGACATCACAGATTCAGGAGTTTTCCACCAGTACAAGCTCCAACTCAACTGGCTCTCCCTCAAAGACGCGGTCAAAGAGAAGTTCACAGTCCTCGACAATGTCCAGTGGTTTGAAGTCCTTGAAGGGAAGATGGGGAATTCCCTGCCTGCTTTAGAGCTGATGGGCCTCGGCAGATTGGCTAAGGAGAAGGCGAGAATGTTGTCAATGGGGCAGCGGAAAAGACTACAGCTTGCTAGGTTGCTGGCAATCGACAGACCTATTTGGTTGCTCGACGAGCCCTCAGTTGCATTGGATACTGACGGGGTGAAGCTGCTCGAGTACATCATTGCAGAGCATAGAAAGAAAGGAGGCATTGTCATTGTGGCAACACATCTGCCTATCGAGATTGAAGACGCAACATACCTGAGGCTGCCAGCTAGGTTCCCAAGGAGAATGACTTTGGTAGATATGCTTGATCGCTCAGACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran

Protein Analysis

228

Amino Acids

25.66

Weight (kDa)

9.74

Isoelectric Point (pI)

39.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 26 - 166 7.2e-28 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63270
fragaria_vesca FvH4_1g01200 FvH4_1g01200 FvH4_1g01210
malus_domestica MD02G1010200.v1.1
prunus_persica Prupe.7G259900_v2.0.a1
pyrus_communis pycom02g00890 pycom15g13920
rosa_chinensis RchiOBHm_Chr2g0086001
rosa_laevigata RLG00000015733
rosa_multiflora Rmu_sc0023469.1_g000002
rosa_roxburghii Rroxscaffold_2G00154860
rosa_rugosa Rorug01G0464900 Rorug05G0522600
rosa_samantha Rh2AG014200 Rh2BG014700 Rh2CG015300 Rh2DG016600
rosa_wichuraiana Rw2G001260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 161
AccB1I GGYRCC 1 cut(s) 128
AccBSI CCGCTC 1 cut(s) 22
AccII CGCG 1 cut(s) 284
AciI CCGC 3 cut(s) 20, 284, 430
AcoI YGGCCR 1 cut(s) 193
AcsI RAATTY 1 cut(s) 352
AfaI GTAC 2 cut(s) 248, 536
AfiI CCNNNNNNNGG 1 cut(s) 191
AflIII ACRYGT 1 cut(s) 82
AgsI TTSAA 3 cut(s) 329, 338, 605
AjnI CCWGG 1 cut(s) 195
AleI CACNNNNGTG 1 cut(s) 105
AluBI AGCT 6 cut(s) 170, 253, 373, 445, 526, 632
AluI AGCT 6 cut(s) 170, 253, 373, 445, 526, 632
Alw21I GWGCWC 1 cut(s) 115
Alw26I GTCTC 3 cut(s) 9, 35, 52
Ama87I CYCGRG 2 cut(s) 139, 530
AoxI GGCC 2 cut(s) 193, 379
ApeKI GCWGC 3 cut(s) 427, 526, 625
ApoI RAATTY 1 cut(s) 352
ArsI GACNNNNNNTTYG 2 cut(s) 270, 302
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 2 cut(s) 199, 379
AsuHPI GGTGA 1 cut(s) 532
AvaI CYCGRG 2 cut(s) 139, 530
AvaII GGWCC 1 cut(s) 199
AxyI CCTNAGG 1 cut(s) 620
BaeGI GKGCMC 1 cut(s) 131
BalI TGGCCA 1 cut(s) 195
BanI GGYRCC 1 cut(s) 128
BanII GRGCYC 1 cut(s) 495
BbsI GAAGAC 1 cut(s) 612
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 3 cut(s) 439, 513, 612
BccI CCATC 3 cut(s) 118, 340, 370
BciT130I CCWGG 1 cut(s) 197
BciVI GTATCC 1 cut(s) 502
BcoDI GTCTC 3 cut(s) 9, 35, 52
BfaI CTAG 2 cut(s) 450, 633
BfmI CTRYAG 1 cut(s) 440
BfuI GTATCC 1 cut(s) 502
BglII AGATCT 1 cut(s) 72
BisI GCNGC 3 cut(s) 428, 527, 626
BlpI GCTNAGC 1 cut(s) 66
BlsI GCNGC 3 cut(s) 429, 528, 627
Bme1390I CCNGG 1 cut(s) 197
Bme18I GGWCC 1 cut(s) 199
BmeT110I CYCGRG 2 cut(s) 139, 530
BmgT120I GGNCC 2 cut(s) 199, 379
BmiI GGNNCC 2 cut(s) 130, 638
BmrFI CCNGG 1 cut(s) 197
BpiI GAAGAC 1 cut(s) 612
BplI GAGNNNNNCTC 2 cut(s) 49, 81
Bpu10I CCTNAGC 1 cut(s) 396
Bpu1102I GCTNAGC 1 cut(s) 66
BsaJI CCNNGG 2 cut(s) 382, 641
BsaXI ACNNNNNCTCC 6 cut(s) 102, 132, 254, 284, 555, 585
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse1I ACTGG 3 cut(s) 244, 269, 319
Bse21I CCTNAGG 1 cut(s) 620
Bse3DI GCAATG 1 cut(s) 540
BseBI CCWGG 1 cut(s) 197
BseDI CCNNGG 2 cut(s) 382, 641
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMI GCAATG 1 cut(s) 540
BseMII CTCAG 3 cut(s) 80, 510, 611
BseNI ACTGG 3 cut(s) 244, 269, 319
BseRI GAGGAG 2 cut(s) 23, 26
BseSI GKGCMC 1 cut(s) 131
BseXI GCAGC 3 cut(s) 439, 513, 612
Bsh1236I CGCG 1 cut(s) 284
BshFI GGCC 2 cut(s) 195, 381
BshNI GGYRCC 1 cut(s) 128
BsiHKAI GWGCWC 1 cut(s) 115
BsiHKCI CYCGRG 2 cut(s) 139, 530
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 3 cut(s) 9, 35, 52
BsmBI CGTCTC 1 cut(s) 35
BsmI GAATGC 1 cut(s) 67
BsnI GGCC 2 cut(s) 195, 381
BsoBI CYCGRG 2 cut(s) 139, 530
Bsp1286I GDGCHC 3 cut(s) 115, 131, 495
Bsp143I GATC 2 cut(s) 72, 670
Bsp1720I GCTNAGC 1 cut(s) 66
BspACI CCGC 3 cut(s) 20, 284, 430
BspANI GGCC 2 cut(s) 195, 381
BspCNI CTCAG 3 cut(s) 79, 509, 612
BspFNI CGCG 1 cut(s) 284
BspLI GGNNCC 2 cut(s) 130, 638
BspT107I GGYRCC 1 cut(s) 128
BsrBI CCGCTC 1 cut(s) 22
BsrDI GCAATG 1 cut(s) 540
BsrI ACTGG 3 cut(s) 244, 269, 319
BssECI CCNNGG 2 cut(s) 382, 641
BssMI GATC 2 cut(s) 72, 670
BssT1I CCWWGG 1 cut(s) 641
Bst2UI CCWGG 1 cut(s) 197
Bst4CI ACNGT 3 cut(s) 97, 107, 304
BstAPI GCANNNNNTGC 1 cut(s) 76
BstC8I GCNNGC 6 cut(s) 172, 193, 363, 447, 459, 630
BstDEI CTNAG 6 cut(s) 66, 180, 396, 496, 620, 676
BstFNI CGCG 1 cut(s) 284
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 2 cut(s) 75, 673
BstMAI GTCTC 3 cut(s) 9, 35, 52
BstMBI GATC 2 cut(s) 72, 670
BstMWI GCNNNNNNNGC 3 cut(s) 76, 135, 490
BstNI CCWGG 1 cut(s) 197
BstNSI RCATGY 2 cut(s) 86, 166
BstSCI CCNGG 1 cut(s) 195
BstSFI CTRYAG 1 cut(s) 440
BstSLI GKGCMC 1 cut(s) 131
BstUI CGCG 1 cut(s) 284
BstV1I GCAGC 3 cut(s) 439, 513, 612
BstV2I GAAGAC 1 cut(s) 612
BstX2I RGATCY 1 cut(s) 72
BstYI RGATCY 1 cut(s) 72
Bsu36I CCTNAGG 1 cut(s) 620
BsuI GTATCC 1 cut(s) 502
BsuRI GGCC 2 cut(s) 195, 381
BtsIMutI CAGTG 1 cut(s) 326
Cac8I GCNNGC 6 cut(s) 172, 193, 363, 447, 459, 630
CfoI GCGC 1 cut(s) 162
Cfr13I GGNCC 2 cut(s) 199, 379
CseI GACGC 2 cut(s) 290, 617
Csp6I GTAC 2 cut(s) 247, 535
CviAII CATG 3 cut(s) 55, 83, 163
CviQI GTAC 2 cut(s) 247, 535
DdeI CTNAG 6 cut(s) 66, 180, 396, 496, 620, 676
DpnI GATC 2 cut(s) 74, 672
DpnII GATC 2 cut(s) 72, 670
EaeI YGGCCR 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 641
Eco24I GRGCYC 1 cut(s) 495
Eco47I GGWCC 1 cut(s) 199
Eco81I CCTNAGG 1 cut(s) 620
Eco88I CYCGRG 2 cut(s) 139, 530
EcoO109I RGGNCCY 1 cut(s) 199
EcoRI GAATTC 1 cut(s) 352
EcoRII CCWGG 1 cut(s) 195
EcoT14I CCWWGG 1 cut(s) 641
EcoT38I GRGCYC 1 cut(s) 495
ErhI CCWWGG 1 cut(s) 641
Esp3I CGTCTC 1 cut(s) 35
FaeI CATG 3 cut(s) 58, 86, 166
FaiI YATR 6 cut(s) 56, 84, 164, 552, 616, 665
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FatI CATG 3 cut(s) 54, 82, 162
FauI CCCGC 1 cut(s) 27
Fnu4HI GCNGC 3 cut(s) 428, 527, 626
FriOI GRGCYC 1 cut(s) 495
Fsp4HI GCNGC 3 cut(s) 428, 527, 626
FspBI CTAG 2 cut(s) 450, 633
FspI TGCGCA 1 cut(s) 161
GlaI GCGC 1 cut(s) 161
GluI GCNGC 3 cut(s) 428, 527, 626
HaeIII GGCC 2 cut(s) 195, 381
HgaI GACGC 2 cut(s) 290, 617
HhaI GCGC 1 cut(s) 162
Hin1II CATG 3 cut(s) 58, 86, 166
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HinfI GANTC 1 cut(s) 227
HphI GGTGA 1 cut(s) 532
Hpy166II GTNNAC 2 cut(s) 100, 300
Hpy188I TCNGA 2 cut(s) 11, 679
Hpy188III TCNNGA 5 cut(s) 101, 205, 215, 231, 598
Hpy8I GTNNAC 2 cut(s) 100, 300
Hpy99I CGWCG 2 cut(s) 107, 491
HpyAV CCTTC 4 cut(s) 163, 195, 332, 397
HpyCH4III ACNGT 3 cut(s) 97, 107, 304
HpyCH4V TGCA 3 cut(s) 54, 503, 545
HpyF10VI GCNNNNNNNGC 3 cut(s) 76, 135, 490
HpyF3I CTNAG 6 cut(s) 66, 180, 396, 496, 620, 676
Hsp92II CATG 3 cut(s) 58, 86, 166
HspAI GCGC 1 cut(s) 160
Kzo9I GATC 2 cut(s) 72, 670
LmnI GCTCC 3 cut(s) 27, 110, 258
Lsp1109I GCAGC 3 cut(s) 439, 513, 612
MaeI CTAG 2 cut(s) 450, 633
MaeIII GTNAC 1 cut(s) 212
MalI GATC 2 cut(s) 74, 672
MbiI CCGCTC 1 cut(s) 22
MboI GATC 2 cut(s) 72, 670
MboII GAAGA 2 cut(s) 355, 617
MflI RGATCY 1 cut(s) 72
MhlI GDGCHC 3 cut(s) 115, 131, 495
MlsI TGGCCA 1 cut(s) 195
MluCI AATT 1 cut(s) 352
MluNI TGGCCA 1 cut(s) 195
MmeI TCCRAC 1 cut(s) 280
Mox20I TGGCCA 1 cut(s) 195
MscI TGGCCA 1 cut(s) 195
MslI CAYNNNNRTG 2 cut(s) 87, 105
Msp20I TGGCCA 1 cut(s) 195
MspA1I CMGCKG 1 cut(s) 430
MspR9I CCNGG 1 cut(s) 197
Mva1269I GAATGC 1 cut(s) 67
MvaI CCWGG 1 cut(s) 197
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 3 cut(s) 76, 135, 490
NdeII GATC 2 cut(s) 72, 670
NlaIII CATG 3 cut(s) 58, 86, 166
NlaIV GGNNCC 2 cut(s) 130, 638
NmeAIII GCCGAG 1 cut(s) 363
NmuCI GTSAC 1 cut(s) 212
NsbI TGCGCA 1 cut(s) 161
NspI RCATGY 2 cut(s) 86, 166
OliI CACNNNNGTG 1 cut(s) 105
PaeR7I CTCGAG 1 cut(s) 530
PciI ACATGT 1 cut(s) 82
PctI GAATGC 1 cut(s) 67
PfeI GAWTC 1 cut(s) 227
PflFI GACNNNGTC 2 cut(s) 284, 314
PkrI GCNGC 3 cut(s) 429, 528, 627
PpuMI RGGWCCY 1 cut(s) 199
PscI ACATGT 1 cut(s) 82
Psp5II RGGWCCY 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
PspN4I GGNNCC 2 cut(s) 130, 638
PspPI GGNCC 2 cut(s) 199, 379
PspPPI RGGWCCY 1 cut(s) 199
PspXI VCTCGAGB 1 cut(s) 530
PsuI RGATCY 1 cut(s) 72
PsyI GACNNNGTC 2 cut(s) 284, 314
RsaI GTAC 2 cut(s) 248, 536
RsaNI GTAC 2 cut(s) 247, 535
RseI CAYNNNNRTG 2 cut(s) 87, 105
SatI GCNGC 3 cut(s) 428, 527, 626
Sau3AI GATC 2 cut(s) 72, 670
Sau96I GGNCC 2 cut(s) 199, 379
ScrFI CCNGG 1 cut(s) 197
SduI GDGCHC 3 cut(s) 115, 131, 495
SfcI CTRYAG 1 cut(s) 440
Sfr274I CTCGAG 1 cut(s) 530
SinI GGWCC 1 cut(s) 199
SlaI CTCGAG 1 cut(s) 530
SmiMI CAYNNNNRTG 2 cut(s) 87, 105
SmlI CTYRAG 1 cut(s) 530
SmoI CTYRAG 1 cut(s) 530
Sse9I AATT 1 cut(s) 352
SsiI CCGC 3 cut(s) 20, 284, 430
SspMI CTAG 2 cut(s) 450, 633
StyD4I CCNGG 1 cut(s) 195
StyI CCWWGG 1 cut(s) 641
TaaI ACNGT 3 cut(s) 97, 107, 304
TaqI TCGA 5 cut(s) 309, 465, 486, 531, 597
TasI AATT 1 cut(s) 352
TatI WGTACW 2 cut(s) 246, 534
TfiI GAWTC 1 cut(s) 227
TscAI CASTG 1 cut(s) 326
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 3 cut(s) 427, 526, 625
Tsp45I GTSAC 1 cut(s) 212
TspRI CASTG 1 cut(s) 326
Tth111I GACNNNGTC 2 cut(s) 284, 314
VpaK11BI GGWCC 1 cut(s) 199
XapI RAATTY 1 cut(s) 352
XceI RCATGY 2 cut(s) 86, 166
XhoI CTCGAG 1 cut(s) 530
XspI CTAG 2 cut(s) 450, 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.