FvH4_1g01200

ABC transporter I family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0012194
Physical Location & Seq
Forward (+)
604227 .. 606866
2640 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g01200.t1

Sequence Viewer

Length: 687 bp
ATGTCTTTGCGAAAGCCCCCGATCCCTCGTCTTCTCCTCAACAACGTCTCTTGTATGAGGAATGCTCAGCAGATCTTGCGTCATGTAAATGCCACAGTACATGATGGTGGAGCACTTGTGCTGATGGGCACAAATGGCTCGGGCAAGAGTACCTTCCTGCGCATGTTAGCTGGCTTTTCTAAGCCTTCTGCTGGCCAGGTCCTCTGGAACGGGCATGACATCACGGATTCAGGAGTTTTCCACCAGTACAAGCTCCAGCTCAACTGGCTCTCACTCAAAGACGCTGTCAAAGAGAAGTTCACAGTCCTCGACAATGTCCAGTGGTTTGAAGTCCTCGAAGGCAAGATGGGGAATTCCCTGCCTGCTCTGGAGCTGATGGGCCTCGGCAGATTGGCCAAAGAGAAGGCGAGAATGCTCTCAATGGGGCAGCGGAAGAGACTCCAGCTCGCAAGGTTGCTAGCAATCGACAGGCCTATTTGGTTGCTCGACGAGCCCTCTGTTGCATTGGACACCGACGGAGTGAAGCTGCTCGAGTACATCATTGCAGAGCATAGAAAGAAAGGCGGCATTGTCATAGTGGCAACACATCTGCCTATTGAGATCGAAGACGCGACATACCTGAGACTGCCAGCTAGGTTCCCAAGGAGAATGACCTTGGTAGACATGCTTGATCGTTCAGACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran

Protein Analysis

229

Amino Acids

25.65

Weight (kDa)

9.74

Isoelectric Point (pI)

38.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 26 - 166 4.2e-28 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63270
fragaria_vesca FvH4_1g01200 FvH4_1g01200 FvH4_1g01210
malus_domestica MD02G1010200.v1.1
prunus_persica Prupe.7G259900_v2.0.a1
pyrus_communis pycom02g00890 pycom15g13920
rosa_chinensis RchiOBHm_Chr2g0086001
rosa_laevigata RLG00000015733
rosa_multiflora Rmu_sc0023469.1_g000002
rosa_roxburghii Rroxscaffold_2G00154860
rosa_rugosa Rorug01G0464900 Rorug05G0522600
rosa_samantha Rh2AG014200 Rh2BG014700 Rh2CG015300 Rh2DG016600
rosa_wichuraiana Rw2G001260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 161
AccI GTMKAC 1 cut(s) 660
AccII CGCG 1 cut(s) 611
AciI CCGC 2 cut(s) 430, 564
AclWI GGATC 1 cut(s) 16
AcoI YGGCCR 2 cut(s) 193, 393
AcsI RAATTY 1 cut(s) 352
AfaI GTAC 4 cut(s) 99, 151, 248, 536
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 1 cut(s) 329
AjnI CCWGG 1 cut(s) 195
AluBI AGCT 7 cut(s) 170, 253, 259, 373, 445, 526, 632
AluI AGCT 7 cut(s) 170, 253, 259, 373, 445, 526, 632
Alw21I GWGCWC 1 cut(s) 115
Alw26I GTCTC 3 cut(s) 52, 430, 616
AlwI GGATC 1 cut(s) 16
Ama87I CYCGRG 2 cut(s) 139, 530
AoxI GGCC 4 cut(s) 193, 379, 393, 470
ApeKI GCWGC 2 cut(s) 427, 526
ApoI RAATTY 1 cut(s) 352
ArsI GACNNNNNNTTYG 2 cut(s) 270, 302
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 2 cut(s) 199, 379
AsuNHI GCTAGC 1 cut(s) 457
AvaI CYCGRG 2 cut(s) 139, 530
AvaII GGWCC 1 cut(s) 199
BaeGI GKGCMC 1 cut(s) 131
BalI TGGCCA 2 cut(s) 195, 395
BanII GRGCYC 1 cut(s) 495
BbsI GAAGAC 2 cut(s) 23, 612
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 2 cut(s) 439, 513
BccI CCATC 4 cut(s) 98, 118, 340, 370
BciT130I CCWGG 1 cut(s) 197
BcoDI GTCTC 3 cut(s) 52, 430, 616
BfaI CTAG 2 cut(s) 458, 633
BglII AGATCT 1 cut(s) 72
BisI GCNGC 3 cut(s) 428, 527, 565
BlpI GCTNAGC 1 cut(s) 66
BlsI GCNGC 3 cut(s) 429, 528, 566
Bme1390I CCNGG 1 cut(s) 197
Bme18I GGWCC 1 cut(s) 199
BmeT110I CYCGRG 2 cut(s) 139, 530
BmgT120I GGNCC 2 cut(s) 199, 379
BmiI GGNNCC 1 cut(s) 638
BmrFI CCNGG 1 cut(s) 197
BmtI GCTAGC 1 cut(s) 461
BpiI GAAGAC 2 cut(s) 23, 612
BplI GAGNNNNNCTC 2 cut(s) 49, 81
BpmI CTGGAG 3 cut(s) 239, 389, 425
Bpu1102I GCTNAGC 1 cut(s) 66
BsaJI CCNNGG 3 cut(s) 382, 641, 654
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse1I ACTGG 3 cut(s) 244, 269, 319
Bse3DI GCAATG 1 cut(s) 540
BseBI CCWGG 1 cut(s) 197
BseDI CCNNGG 3 cut(s) 382, 641, 654
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMI GCAATG 1 cut(s) 540
BseMII CTCAG 2 cut(s) 80, 611
BseNI ACTGG 3 cut(s) 244, 269, 319
BseRI GAGGAG 1 cut(s) 26
BseSI GKGCMC 1 cut(s) 131
BseXI GCAGC 2 cut(s) 439, 513
Bsh1236I CGCG 1 cut(s) 611
BshFI GGCC 4 cut(s) 195, 381, 395, 472
BsiHKAI GWGCWC 1 cut(s) 115
BsiHKCI CYCGRG 2 cut(s) 139, 530
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 3 cut(s) 52, 430, 616
BsmBI CGTCTC 1 cut(s) 52
BsmI GAATGC 2 cut(s) 67, 417
BsnI GGCC 4 cut(s) 195, 381, 395, 472
BsoBI CYCGRG 2 cut(s) 139, 530
Bsp1286I GDGCHC 3 cut(s) 115, 131, 495
Bsp143I GATC 4 cut(s) 21, 72, 600, 670
Bsp1720I GCTNAGC 1 cut(s) 66
BspACI CCGC 2 cut(s) 430, 564
BspANI GGCC 4 cut(s) 195, 381, 395, 472
BspCNI CTCAG 2 cut(s) 79, 612
BspFNI CGCG 1 cut(s) 611
BspLI GGNNCC 1 cut(s) 638
BspOI GCTAGC 1 cut(s) 461
BspPI GGATC 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 540
BsrI ACTGG 3 cut(s) 244, 269, 319
BssECI CCNNGG 3 cut(s) 382, 641, 654
BssMI GATC 4 cut(s) 21, 72, 600, 670
BssT1I CCWWGG 2 cut(s) 641, 654
Bst2UI CCWGG 1 cut(s) 197
Bst4CI ACNGT 2 cut(s) 97, 304
Bst6I CTCTTC 1 cut(s) 428
BstAPI GCANNNNNTGC 1 cut(s) 76
BstC8I GCNNGC 6 cut(s) 172, 193, 363, 447, 459, 630
BstDEI CTNAG 3 cut(s) 66, 180, 620
BstFNI CGCG 1 cut(s) 611
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 4 cut(s) 24, 75, 603, 673
BstMAI GTCTC 3 cut(s) 52, 430, 616
BstMBI GATC 4 cut(s) 21, 72, 600, 670
BstMWI GCNNNNNNNGC 4 cut(s) 76, 135, 265, 490
BstNI CCWGG 1 cut(s) 197
BstNSI RCATGY 2 cut(s) 166, 667
BstSCI CCNGG 1 cut(s) 195
BstSLI GKGCMC 1 cut(s) 131
BstUI CGCG 1 cut(s) 611
BstV1I GCAGC 2 cut(s) 439, 513
BstV2I GAAGAC 2 cut(s) 23, 612
BstX2I RGATCY 1 cut(s) 72
BstYI RGATCY 1 cut(s) 72
BsuRI GGCC 4 cut(s) 195, 381, 395, 472
BtsIMutI CAGTG 1 cut(s) 326
Cac8I GCNNGC 6 cut(s) 172, 193, 363, 447, 459, 630
CfoI GCGC 1 cut(s) 162
Cfr13I GGNCC 2 cut(s) 199, 379
CseI GACGC 3 cut(s) 68, 290, 617
Csp6I GTAC 4 cut(s) 98, 150, 247, 535
CviAII CATG 5 cut(s) 83, 101, 163, 215, 664
CviQI GTAC 4 cut(s) 98, 150, 247, 535
DdeI CTNAG 3 cut(s) 66, 180, 620
DpnI GATC 4 cut(s) 23, 74, 602, 672
DpnII GATC 4 cut(s) 21, 72, 600, 670
EaeI YGGCCR 2 cut(s) 193, 393
Eam1104I CTCTTC 1 cut(s) 428
EarI CTCTTC 1 cut(s) 428
Eco130I CCWWGG 2 cut(s) 641, 654
Eco147I AGGCCT 1 cut(s) 472
Eco24I GRGCYC 1 cut(s) 495
Eco47I GGWCC 1 cut(s) 199
Eco88I CYCGRG 2 cut(s) 139, 530
EcoO109I RGGNCCY 1 cut(s) 199
EcoRI GAATTC 1 cut(s) 352
EcoRII CCWGG 1 cut(s) 195
EcoT14I CCWWGG 2 cut(s) 641, 654
EcoT38I GRGCYC 1 cut(s) 495
ErhI CCWWGG 2 cut(s) 641, 654
Esp3I CGTCTC 1 cut(s) 52
FaeI CATG 5 cut(s) 86, 104, 166, 218, 667
FaiI YATR 9 cut(s) 56, 84, 102, 164, 216, 552, 575, 616, 665
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FatI CATG 5 cut(s) 82, 100, 162, 214, 663
FblI GTMKAC 1 cut(s) 660
Fnu4HI GCNGC 3 cut(s) 428, 527, 565
FriOI GRGCYC 1 cut(s) 495
Fsp4HI GCNGC 3 cut(s) 428, 527, 565
FspBI CTAG 2 cut(s) 458, 633
FspI TGCGCA 1 cut(s) 161
GlaI GCGC 1 cut(s) 161
GluI GCNGC 3 cut(s) 428, 527, 565
GsuI CTGGAG 3 cut(s) 239, 389, 425
HaeIII GGCC 4 cut(s) 195, 381, 395, 472
HgaI GACGC 3 cut(s) 68, 290, 617
HhaI GCGC 1 cut(s) 162
Hin1II CATG 5 cut(s) 86, 104, 166, 218, 667
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HinfI GANTC 2 cut(s) 227, 438
Hpy166II GTNNAC 2 cut(s) 300, 661
Hpy188I TCNGA 1 cut(s) 679
Hpy188III TCNNGA 3 cut(s) 205, 231, 368
Hpy8I GTNNAC 2 cut(s) 300, 661
Hpy99I CGWCG 2 cut(s) 491, 518
HpyAV CCTTC 4 cut(s) 163, 195, 332, 397
HpyCH4III ACNGT 2 cut(s) 97, 304
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 2 cut(s) 503, 545
HpyF10VI GCNNNNNNNGC 4 cut(s) 76, 135, 265, 490
HpyF3I CTNAG 3 cut(s) 66, 180, 620
HpySE526I ACGT 1 cut(s) 45
Hsp92II CATG 5 cut(s) 86, 104, 166, 218, 667
HspAI GCGC 1 cut(s) 160
Kzo9I GATC 4 cut(s) 21, 72, 600, 670
LmnI GCTCC 3 cut(s) 110, 258, 370
Lsp1109I GCAGC 2 cut(s) 439, 513
MaeI CTAG 2 cut(s) 458, 633
MaeII ACGT 1 cut(s) 45
MalI GATC 4 cut(s) 23, 74, 602, 672
MboI GATC 4 cut(s) 21, 72, 600, 670
MboII GAAGA 3 cut(s) 23, 445, 617
MflI RGATCY 1 cut(s) 72
MhlI GDGCHC 3 cut(s) 115, 131, 495
MlsI TGGCCA 2 cut(s) 195, 395
MluCI AATT 1 cut(s) 352
MluNI TGGCCA 2 cut(s) 195, 395
MlyI GAGTC 1 cut(s) 432
MnlI CCTC 8 cut(s) 36, 47, 51, 212, 317, 344, 392, 505
Mox20I TGGCCA 2 cut(s) 195, 395
MscI TGGCCA 2 cut(s) 195, 395
MslI CAYNNNNRTG 2 cut(s) 87, 105
Msp20I TGGCCA 2 cut(s) 195, 395
MspA1I CMGCKG 1 cut(s) 430
MspR9I CCNGG 1 cut(s) 197
Mva1269I GAATGC 2 cut(s) 67, 417
MvaI CCWGG 1 cut(s) 197
MvnI CGCG 1 cut(s) 611
MwoI GCNNNNNNNGC 4 cut(s) 76, 135, 265, 490
NdeII GATC 4 cut(s) 21, 72, 600, 670
NheI GCTAGC 1 cut(s) 457
NlaIII CATG 5 cut(s) 86, 104, 166, 218, 667
NlaIV GGNNCC 1 cut(s) 638
NmeAIII GCCGAG 1 cut(s) 363
NsbI TGCGCA 1 cut(s) 161
NspI RCATGY 2 cut(s) 166, 667
PaeR7I CTCGAG 1 cut(s) 530
PceI AGGCCT 1 cut(s) 472
PctI GAATGC 2 cut(s) 67, 417
PfeI GAWTC 1 cut(s) 227
PflFI GACNNNGTC 2 cut(s) 284, 314
PkrI GCNGC 3 cut(s) 429, 528, 566
PleI GAGTC 1 cut(s) 432
PpsI GAGTC 1 cut(s) 432
PpuMI RGGWCCY 1 cut(s) 199
Psp5II RGGWCCY 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 638
PspPI GGNCC 2 cut(s) 199, 379
PspPPI RGGWCCY 1 cut(s) 199
PspXI VCTCGAGB 1 cut(s) 530
PsuI RGATCY 1 cut(s) 72
PsyI GACNNNGTC 2 cut(s) 284, 314
RsaI GTAC 4 cut(s) 99, 151, 248, 536
RsaNI GTAC 4 cut(s) 98, 150, 247, 535
RseI CAYNNNNRTG 2 cut(s) 87, 105
SatI GCNGC 3 cut(s) 428, 527, 565
Sau3AI GATC 4 cut(s) 21, 72, 600, 670
Sau96I GGNCC 2 cut(s) 199, 379
SchI GAGTC 1 cut(s) 432
ScrFI CCNGG 1 cut(s) 197
SduI GDGCHC 3 cut(s) 115, 131, 495
Sfr274I CTCGAG 1 cut(s) 530
SinI GGWCC 1 cut(s) 199
SlaI CTCGAG 1 cut(s) 530
SmiMI CAYNNNNRTG 2 cut(s) 87, 105
SmlI CTYRAG 1 cut(s) 530
SmoI CTYRAG 1 cut(s) 530
Sse9I AATT 1 cut(s) 352
SseBI AGGCCT 1 cut(s) 472
SsiI CCGC 2 cut(s) 430, 564
SspMI CTAG 2 cut(s) 458, 633
StuI AGGCCT 1 cut(s) 472
StyD4I CCNGG 1 cut(s) 195
StyI CCWWGG 2 cut(s) 641, 654
TaaI ACNGT 2 cut(s) 97, 304
TaiI ACGT 1 cut(s) 48
TaqI TCGA 6 cut(s) 309, 336, 465, 486, 531, 603
TasI AATT 1 cut(s) 352
TatI WGTACW 3 cut(s) 97, 246, 534
TauI GCSGC 1 cut(s) 567
TfiI GAWTC 1 cut(s) 227
TscAI CASTG 1 cut(s) 326
TseI GCWGC 2 cut(s) 427, 526
TspGWI ACGGA 2 cut(s) 239, 531
TspRI CASTG 1 cut(s) 326
Tth111I GACNNNGTC 2 cut(s) 284, 314
VpaK11BI GGWCC 1 cut(s) 199
XapI RAATTY 1 cut(s) 352
XceI RCATGY 2 cut(s) 166, 667
XhoI CTCGAG 1 cut(s) 530
XmiI GTMKAC 1 cut(s) 660
XspI CTAG 2 cut(s) 458, 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.