Rmu_sc0023469.1_g000002

ABC transporter I family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023469.1
OG0012194
Physical Location & Seq
Forward (+)
3734 .. 4420
687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023469.1_g000002.1.cds

Sequence Viewer

Length: 687 bp
atgtctctccgaaagcccccgctccctcgtctcctcctcaacaatgtctcttgcatgaggaatgcccagcagatattgcgacatgtaaatgccacagttcacgacggtggagcacttgtgctgatgggcactaatggctcgggcaagactaccttcctgcgtatgttggccggcttttctaagccttctgctggccaggtcctctggaatggtcacgacatcacagattcaggagttttccaccagtacaagctccaactcaactggctctccctcaaagacgcggtcaaagagaagttcacagtcctcgacaatgtccagtggtttgaagtccttgaagggaagatggggaattccctgcctgctttagagctgatgggcctcggcagattggctaaggagaaggcgagaatgctgtcaatggggcagcggaaaagactacagctcgctaggttgctggcaattgacagacctatttggttgctcgacgagccctcagttgcattggatactgacggggtgaagctgctcgagtacatcattgcagagcatagaaagaaagggggcattgtcattgtggcaacacatctgcctatcgagatcgaagacgcgacatacctgaggctgccagctaggttcccaaggagaatgaccttggtagatatgcttgatcgctcagacttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran

Protein Analysis

228

Amino Acids

25.66

Weight (kDa)

9.74

Isoelectric Point (pI)

39.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63270
fragaria_vesca FvH4_1g01200 FvH4_1g01200 FvH4_1g01210
malus_domestica MD02G1010200.v1.1
prunus_persica Prupe.7G259900_v2.0.a1
pyrus_communis pycom02g00890 pycom15g13920
rosa_chinensis RchiOBHm_Chr2g0086001
rosa_laevigata RLG00000015733
rosa_multiflora Rmu_sc0023469.1_g000002
rosa_roxburghii Rroxscaffold_2G00154860
rosa_rugosa Rorug01G0464900 Rorug05G0522600
rosa_samantha Rh2AG014200 Rh2BG014700 Rh2CG015300 Rh2DG016600
rosa_wichuraiana Rw2G001260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 22
AccII CGCG 2 cut(s) 284, 611
AciI CCGC 3 cut(s) 20, 284, 430
AcoI YGGCCR 2 cut(s) 168, 193
AcsI RAATTY 1 cut(s) 352
AfaI GTAC 2 cut(s) 248, 536
AfiI CCNNNNNNNGG 1 cut(s) 191
AflIII ACRYGT 1 cut(s) 82
AgsI TTSAA 2 cut(s) 329, 338
AjnI CCWGG 1 cut(s) 195
AleI CACNNNNGTG 1 cut(s) 105
AluBI AGCT 5 cut(s) 253, 373, 445, 526, 632
AluI AGCT 5 cut(s) 253, 373, 445, 526, 632
Alw21I GWGCWC 1 cut(s) 115
Alw26I GTCTC 3 cut(s) 9, 35, 52
Ama87I CYCGRG 2 cut(s) 139, 530
AoxI GGCC 3 cut(s) 168, 193, 379
ApeKI GCWGC 3 cut(s) 427, 526, 625
ApoI RAATTY 1 cut(s) 352
ArsI GACNNNNNNTTYG 2 cut(s) 270, 302
AspS9I GGNCC 2 cut(s) 199, 379
AsuHPI GGTGA 1 cut(s) 532
AvaI CYCGRG 2 cut(s) 139, 530
AvaII GGWCC 1 cut(s) 199
AxyI CCTNAGG 1 cut(s) 620
BaeGI GKGCMC 1 cut(s) 131
BalI TGGCCA 1 cut(s) 195
BanII GRGCYC 1 cut(s) 495
BbsI GAAGAC 1 cut(s) 612
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 3 cut(s) 439, 513, 612
BccI CCATC 3 cut(s) 118, 340, 370
BciT130I CCWGG 1 cut(s) 197
BciVI GTATCC 1 cut(s) 502
BcoDI GTCTC 3 cut(s) 9, 35, 52
BfaI CTAG 2 cut(s) 450, 633
BfmI CTRYAG 1 cut(s) 440
BfuI GTATCC 1 cut(s) 502
BisI GCNGC 3 cut(s) 428, 527, 626
BlsI GCNGC 3 cut(s) 429, 528, 627
Bme1390I CCNGG 1 cut(s) 197
Bme18I GGWCC 1 cut(s) 199
BmeT110I CYCGRG 2 cut(s) 139, 530
BmgT120I GGNCC 2 cut(s) 199, 379
BmiI GGNNCC 1 cut(s) 638
BmrFI CCNGG 1 cut(s) 197
BpiI GAAGAC 1 cut(s) 612
Bpu10I CCTNAGC 1 cut(s) 396
BsaJI CCNNGG 3 cut(s) 382, 641, 654
BsaXI ACNNNNNCTCC 4 cut(s) 102, 132, 254, 284
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse118I RCCGGY 1 cut(s) 170
Bse1I ACTGG 3 cut(s) 244, 269, 319
Bse21I CCTNAGG 1 cut(s) 620
Bse3DI GCAATG 1 cut(s) 540
BseBI CCWGG 1 cut(s) 197
BseDI CCNNGG 3 cut(s) 382, 641, 654
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMI GCAATG 1 cut(s) 540
BseMII CTCAG 2 cut(s) 510, 611
BseNI ACTGG 3 cut(s) 244, 269, 319
BseRI GAGGAG 2 cut(s) 23, 26
BseSI GKGCMC 1 cut(s) 131
BseXI GCAGC 3 cut(s) 439, 513, 612
BseYI CCCAGC 1 cut(s) 66
Bsh1236I CGCG 2 cut(s) 284, 611
BshFI GGCC 3 cut(s) 170, 195, 381
BsiHKAI GWGCWC 1 cut(s) 115
BsiHKCI CYCGRG 2 cut(s) 139, 530
BsiSI CCGG 1 cut(s) 171
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 3 cut(s) 9, 35, 52
BsmBI CGTCTC 1 cut(s) 35
BsmI GAATGC 2 cut(s) 67, 417
BsnI GGCC 3 cut(s) 170, 195, 381
BsoBI CYCGRG 2 cut(s) 139, 530
Bsp1286I GDGCHC 3 cut(s) 115, 131, 495
Bsp143I GATC 2 cut(s) 600, 670
BspACI CCGC 3 cut(s) 20, 284, 430
BspANI GGCC 3 cut(s) 170, 195, 381
BspCNI CTCAG 2 cut(s) 509, 612
BspFNI CGCG 2 cut(s) 284, 611
BspLI GGNNCC 1 cut(s) 638
BsrBI CCGCTC 1 cut(s) 22
BsrDI GCAATG 1 cut(s) 540
BsrFI RCCGGY 1 cut(s) 170
BsrI ACTGG 3 cut(s) 244, 269, 319
BssAI RCCGGY 1 cut(s) 170
BssECI CCNNGG 3 cut(s) 382, 641, 654
BssMI GATC 2 cut(s) 600, 670
BssT1I CCWWGG 2 cut(s) 641, 654
Bst2UI CCWGG 1 cut(s) 197
Bst4CI ACNGT 3 cut(s) 97, 107, 304
BstAPI GCANNNNNTGC 1 cut(s) 76
BstC8I GCNNGC 6 cut(s) 172, 193, 363, 447, 459, 630
BstDEI CTNAG 5 cut(s) 180, 396, 496, 620, 676
BstFNI CGCG 2 cut(s) 284, 611
BstKTI GATC 2 cut(s) 603, 673
BstMAI GTCTC 3 cut(s) 9, 35, 52
BstMBI GATC 2 cut(s) 600, 670
BstMWI GCNNNNNNNGC 3 cut(s) 76, 135, 490
BstNI CCWGG 1 cut(s) 197
BstNSI RCATGY 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 195
BstSFI CTRYAG 1 cut(s) 440
BstSLI GKGCMC 1 cut(s) 131
BstUI CGCG 2 cut(s) 284, 611
BstV1I GCAGC 3 cut(s) 439, 513, 612
BstV2I GAAGAC 1 cut(s) 612
Bsu36I CCTNAGG 1 cut(s) 620
BsuI GTATCC 1 cut(s) 502
BsuRI GGCC 3 cut(s) 170, 195, 381
BtsIMutI CAGTG 1 cut(s) 326
Cac8I GCNNGC 6 cut(s) 172, 193, 363, 447, 459, 630
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 2 cut(s) 199, 379
CseI GACGC 2 cut(s) 290, 617
Csp6I GTAC 2 cut(s) 247, 535
CviAII CATG 2 cut(s) 55, 83
CviQI GTAC 2 cut(s) 247, 535
DdeI CTNAG 5 cut(s) 180, 396, 496, 620, 676
DpnI GATC 2 cut(s) 602, 672
DpnII GATC 2 cut(s) 600, 670
EaeI YGGCCR 2 cut(s) 168, 193
Eco130I CCWWGG 2 cut(s) 641, 654
Eco24I GRGCYC 1 cut(s) 495
Eco47I GGWCC 1 cut(s) 199
Eco81I CCTNAGG 1 cut(s) 620
Eco88I CYCGRG 2 cut(s) 139, 530
EcoO109I RGGNCCY 1 cut(s) 199
EcoRI GAATTC 1 cut(s) 352
EcoRII CCWGG 1 cut(s) 195
EcoT14I CCWWGG 2 cut(s) 641, 654
EcoT38I GRGCYC 1 cut(s) 495
ErhI CCWWGG 2 cut(s) 641, 654
Esp3I CGTCTC 1 cut(s) 35
FaeI CATG 2 cut(s) 58, 86
FaiI YATR 6 cut(s) 56, 84, 164, 552, 616, 665
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FatI CATG 2 cut(s) 54, 82
FauI CCCGC 1 cut(s) 27
Fnu4HI GCNGC 3 cut(s) 428, 527, 626
FriOI GRGCYC 1 cut(s) 495
Fsp4HI GCNGC 3 cut(s) 428, 527, 626
FspBI CTAG 2 cut(s) 450, 633
GluI GCNGC 3 cut(s) 428, 527, 626
GsaI CCCAGC 1 cut(s) 70
HaeIII GGCC 3 cut(s) 170, 195, 381
HapII CCGG 1 cut(s) 171
HgaI GACGC 2 cut(s) 290, 617
Hin1II CATG 2 cut(s) 58, 86
HinfI GANTC 1 cut(s) 227
HpaII CCGG 1 cut(s) 171
HphI GGTGA 1 cut(s) 532
Hpy166II GTNNAC 2 cut(s) 100, 300
Hpy188I TCNGA 2 cut(s) 11, 679
Hpy188III TCNNGA 5 cut(s) 101, 205, 215, 231, 598
Hpy8I GTNNAC 2 cut(s) 100, 300
Hpy99I CGWCG 2 cut(s) 107, 491
HpyAV CCTTC 4 cut(s) 163, 195, 332, 397
HpyCH4III ACNGT 3 cut(s) 97, 107, 304
HpyCH4V TGCA 3 cut(s) 54, 503, 545
HpyF10VI GCNNNNNNNGC 3 cut(s) 76, 135, 490
HpyF3I CTNAG 5 cut(s) 180, 396, 496, 620, 676
Hsp92II CATG 2 cut(s) 58, 86
KroI GCCGGC 1 cut(s) 170
KroNI GCCGGC 1 cut(s) 172
Kzo9I GATC 2 cut(s) 600, 670
LmnI GCTCC 3 cut(s) 27, 110, 258
Lsp1109I GCAGC 3 cut(s) 439, 513, 612
MaeI CTAG 2 cut(s) 450, 633
MaeIII GTNAC 1 cut(s) 212
MalI GATC 2 cut(s) 602, 672
MbiI CCGCTC 1 cut(s) 22
MboI GATC 2 cut(s) 600, 670
MboII GAAGA 2 cut(s) 355, 617
MfeI CAATTG 1 cut(s) 462
MhlI GDGCHC 3 cut(s) 115, 131, 495
MlsI TGGCCA 1 cut(s) 195
MluCI AATT 2 cut(s) 352, 462
MluNI TGGCCA 1 cut(s) 195
MmeI TCCRAC 1 cut(s) 280
Mox20I TGGCCA 1 cut(s) 195
MroNI GCCGGC 1 cut(s) 170
MscI TGGCCA 1 cut(s) 195
MslI CAYNNNNRTG 2 cut(s) 87, 105
Msp20I TGGCCA 1 cut(s) 195
MspA1I CMGCKG 1 cut(s) 430
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 1 cut(s) 197
MunI CAATTG 1 cut(s) 462
Mva1269I GAATGC 2 cut(s) 67, 417
MvaI CCWGG 1 cut(s) 197
MvnI CGCG 2 cut(s) 284, 611
MwoI GCNNNNNNNGC 3 cut(s) 76, 135, 490
NaeI GCCGGC 1 cut(s) 172
NdeII GATC 2 cut(s) 600, 670
NgoMIV GCCGGC 1 cut(s) 170
NlaIII CATG 2 cut(s) 58, 86
NlaIV GGNNCC 1 cut(s) 638
NmeAIII GCCGAG 1 cut(s) 363
NmuCI GTSAC 1 cut(s) 212
NspI RCATGY 1 cut(s) 86
OliI CACNNNNGTG 1 cut(s) 105
PaeR7I CTCGAG 1 cut(s) 530
PciI ACATGT 1 cut(s) 82
PctI GAATGC 2 cut(s) 67, 417
PdiI GCCGGC 1 cut(s) 172
PfeI GAWTC 1 cut(s) 227
PflFI GACNNNGTC 2 cut(s) 284, 314
PkrI GCNGC 3 cut(s) 429, 528, 627
PpuMI RGGWCCY 1 cut(s) 199
PscI ACATGT 1 cut(s) 82
Psp5II RGGWCCY 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 195
PspFI CCCAGC 1 cut(s) 66
PspGI CCWGG 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 638
PspPI GGNCC 2 cut(s) 199, 379
PspPPI RGGWCCY 1 cut(s) 199
PspXI VCTCGAGB 1 cut(s) 530
PsyI GACNNNGTC 2 cut(s) 284, 314
RsaI GTAC 2 cut(s) 248, 536
RsaNI GTAC 2 cut(s) 247, 535
RseI CAYNNNNRTG 2 cut(s) 87, 105
SatI GCNGC 3 cut(s) 428, 527, 626
Sau3AI GATC 2 cut(s) 600, 670
Sau96I GGNCC 2 cut(s) 199, 379
ScrFI CCNGG 1 cut(s) 197
SduI GDGCHC 3 cut(s) 115, 131, 495
SfcI CTRYAG 1 cut(s) 440
Sfr274I CTCGAG 1 cut(s) 530
SinI GGWCC 1 cut(s) 199
SlaI CTCGAG 1 cut(s) 530
SmiMI CAYNNNNRTG 2 cut(s) 87, 105
SmlI CTYRAG 1 cut(s) 530
SmoI CTYRAG 1 cut(s) 530
Sse9I AATT 2 cut(s) 352, 462
SsiI CCGC 3 cut(s) 20, 284, 430
SspMI CTAG 2 cut(s) 450, 633
StyD4I CCNGG 1 cut(s) 195
StyI CCWWGG 2 cut(s) 641, 654
TaaI ACNGT 3 cut(s) 97, 107, 304
TaqI TCGA 5 cut(s) 309, 486, 531, 597, 603
TasI AATT 2 cut(s) 352, 462
TatI WGTACW 2 cut(s) 246, 534
TfiI GAWTC 1 cut(s) 227
TscAI CASTG 1 cut(s) 326
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 3 cut(s) 427, 526, 625
Tsp45I GTSAC 1 cut(s) 212
TspRI CASTG 1 cut(s) 326
Tth111I GACNNNGTC 2 cut(s) 284, 314
VpaK11BI GGWCC 1 cut(s) 199
XapI RAATTY 1 cut(s) 352
XceI RCATGY 1 cut(s) 86
XhoI CTCGAG 1 cut(s) 530
XspI CTAG 2 cut(s) 450, 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.