AT1G63900

Mitochondrial ubiquitin ligase activator of NFKB 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011309
Physical Location & Seq
Forward (+)
23716643 .. 23719337
2695 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G63900.2

Sequence Viewer

Length: 1032 bp
ATGATTCCTTGGGGTGGAGTTACTTGCTGCCTCAGCGCCGCTGCTCTTTATCTTCTCGGCCGGAGTAGTGGCAGGGATGCTGAAGTACTCGAAACAGTCACTAGGGTTAATCAGCTCAAGGAGTTAGCTCAATTGCTAGAATTAGATAGCAAGATTCTGCCTTTCATTGTTGCGGTATCAGGAAGAGTCGGCTCTGAGACACCTATCAAATGCGAGCATAGTGGCATACGCGGTGTTATTGTTGAAGAAACGGCGGAACAACATTTCCTGAAACATAATGAGACGGGTTCTTGGGTACAAGATAGTGCGTTGATGCTATCAATGAGCAAAGAGGTTCCTTGGTTTCTGGACGATGGGACAAGCCGTGTCCATGTAATGGGAGCTCGTGGTGCGACGGGTTTTGCCTTGACTGTTGGTAGTGAAGTTTTTGAAGAGTCAGGACGCTCGCTTGTACGAGGAACACTTGATTATCTTCAAGGACTTAAGATGCTTGGAGTTAAGCGCATTGAGCGTGTTCTTCCAACTGGAATACCGCTAACAATTGTTGGTGAGGCTGTCAAGGACGATATTGGAGAATTCAGGATTCAAAAACCTGACAGGGGCCCTTTCTACGTCTCTTCTAAATCACTCGATCAGCTCATTTCTAATTTGGGAAAATGGTCAAGGTTGTACAAATATGCCTCCATGGGTTTTACTGTTCTTGGTGTGTTCCTAATTACGAAGCATGTCATTGACTCTGTTCTAGAGAGAAGACGGCGGAGACAGTTACAAAAAAGAGTGCTTGACGCAGCAGCAAAGAGAGCTGAGCTAGAGAGTGAAGGTTCAAACGGGACACGTGAGAGCATTTCAGATTCTACCAAGAAAGAAGACGCTGTTCCTGATCTCTGTGTGATATGCCTAGAGCAGGAGTACAACGCTGTGTTTGTCCCGTGTGGTCATATGTGCTGCTGCACCGCATGCTCCTCCCACTTGACCAGCTGTCCACTTTGTCGGAGACGAATAGATCTGGCGGTTAAGACATATCGTCACTGA

Protein Analysis

343

Amino Acids

37.91

Weight (kDa)

8.22

Isoelectric Point (pI)

45.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GIDE PF12483 86 - 236 1.4e-42 E3 Ubiquitin ligase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0011309)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63900
fragaria_vesca FvH4_2g24080 FvH4_2g24080
malus_domestica MD03G1270200.v1.1 MD11G1291200.v1.1
prunus_persica Prupe.8G246900_v2.0.a1
pyrus_communis pycom03g21540 pycom11g25810
rosa_chinensis RchiOBHm_Chr6g0291861
rosa_laevigata RLG00000012082
rosa_multiflora Rmu_sc0001043.1_g000019 Rmu_sc0002484.1_g000001
rosa_roxburghii Rroxscaffold_7G00175690
rosa_rugosa Rorug06G0221700
rosa_samantha Rh6AG334800 Rh6BG342300 Rh6CG348100 Rh6DG335100
rosa_wichuraiana Rw6G028920 Rw6G029140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 376
AccII CGCG 1 cut(s) 231
AciI CCGC 8 cut(s) 39, 173, 231, 254, 533, 757, 954, 1010
AcoI YGGCCR 1 cut(s) 58
AcsI RAATTY 1 cut(s) 575
AcuI CTGAAG 1 cut(s) 102
AcvI CACGTG 1 cut(s) 836
AfaI GTAC 5 cut(s) 87, 297, 453, 671, 911
AfiI CCNNNNNNNGG 4 cut(s) 14, 376, 599, 904
AflII CTTAAG 1 cut(s) 482
AflIII ACRYGT 1 cut(s) 833
AgsI TTSAA 5 cut(s) 245, 431, 476, 587, 825
AhdI GACNNNNNGTC 2 cut(s) 978, 1023
AloI GAACNNNNNNTCC 2 cut(s) 249, 281
AluBI AGCT 7 cut(s) 115, 128, 383, 637, 803, 808, 978
AluI AGCT 7 cut(s) 115, 128, 383, 637, 803, 808, 978
Alw21I GWGCWC 1 cut(s) 385
Alw26I GTCTC 5 cut(s) 191, 275, 619, 754, 988
AoxI GGCC 2 cut(s) 58, 601
ApaI GGGCCC 1 cut(s) 605
ApeKI GCWGC 6 cut(s) 27, 41, 788, 791, 945, 948
ApoI RAATTY 1 cut(s) 575
AspLEI GCGC 2 cut(s) 38, 504
AspS9I GGNCC 2 cut(s) 601, 602
AsuHPI GGTGA 1 cut(s) 560
BaeGI GKGCMC 1 cut(s) 605
BanII GRGCYC 2 cut(s) 385, 605
BauI CACGAG 1 cut(s) 384
BbrPI CACGTG 1 cut(s) 836
BbsI GAAGAC 2 cut(s) 757, 873
Bbv12I GWGCWC 1 cut(s) 385
BbvCI CCTCAGC 1 cut(s) 32
BbvI GCAGC 6 cut(s) 14, 28, 800, 803, 932, 935
BccI CCATC 1 cut(s) 347
BceAI ACGGC 3 cut(s) 267, 348, 770
BcoDI GTCTC 5 cut(s) 191, 275, 619, 754, 988
BfaI CTAG 5 cut(s) 102, 137, 743, 809, 899
BfoI RGCGCY 1 cut(s) 39
BfrI CTTAAG 1 cut(s) 482
BglII AGATCT 1 cut(s) 1003
BisI GCNGC 7 cut(s) 28, 39, 42, 789, 792, 946, 949
BlpI GCTNAGC 1 cut(s) 804
BlsI GCNGC 7 cut(s) 29, 40, 43, 790, 793, 947, 950
BmcAI AGTACT 1 cut(s) 87
BmeRI GACNNNNNGTC 2 cut(s) 978, 1023
BmgT120I GGNCC 2 cut(s) 601, 602
BmiI GGNNCC 3 cut(s) 336, 602, 603
BmsI GCATC 3 cut(s) 67, 303, 477
BpiI GAAGAC 2 cut(s) 757, 873
Bpu10I CCTNAGC 1 cut(s) 32
Bpu1102I GCTNAGC 1 cut(s) 804
BpuEI CTTGAG 1 cut(s) 101
BsaAI YACGTR 1 cut(s) 836
BsaJI CCNNGG 3 cut(s) 8, 338, 684
Bsc4I CCNNNNNNNGG 4 cut(s) 14, 376, 599, 904
Bse1I ACTGG 1 cut(s) 529
BseDI CCNNGG 3 cut(s) 8, 338, 684
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 4 cut(s) 14, 376, 599, 904
BseMII CTCAG 3 cut(s) 46, 186, 795
BseNI ACTGG 1 cut(s) 529
BseRI GAGGAG 1 cut(s) 952
BseSI GKGCMC 1 cut(s) 605
BseX3I CGGCCG 1 cut(s) 58
BseXI GCAGC 6 cut(s) 14, 28, 800, 803, 932, 935
BsgI GTGCAG 1 cut(s) 934
Bsh1236I CGCG 1 cut(s) 231
Bsh1285I CGRYCG 1 cut(s) 61
BshFI GGCC 2 cut(s) 60, 603
BsiEI CGRYCG 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 385
BsiSI CCGG 1 cut(s) 61
BslFI GGGAC 3 cut(s) 370, 844, 911
BslI CCNNNNNNNGG 4 cut(s) 14, 376, 599, 904
BsmAI GTCTC 5 cut(s) 191, 275, 619, 754, 988
BsmBI CGTCTC 3 cut(s) 275, 619, 988
BsmFI GGGAC 3 cut(s) 370, 844, 911
BsnI GGCC 2 cut(s) 60, 603
Bsp120I GGGCCC 1 cut(s) 601
Bsp1286I GDGCHC 2 cut(s) 385, 605
Bsp1407I TGTACA 1 cut(s) 669
Bsp143I GATC 3 cut(s) 631, 880, 1003
Bsp1720I GCTNAGC 1 cut(s) 804
Bsp19I CCATGG 1 cut(s) 684
BspACI CCGC 8 cut(s) 39, 173, 231, 254, 533, 757, 954, 1010
BspANI GGCC 2 cut(s) 60, 603
BspCNI CTCAG 3 cut(s) 45, 187, 796
BspFNI CGCG 1 cut(s) 231
BspLI GGNNCC 3 cut(s) 336, 602, 603
BspTI CTTAAG 1 cut(s) 482
BsrGI TGTACA 1 cut(s) 669
BsrI ACTGG 1 cut(s) 529
BssECI CCNNGG 3 cut(s) 8, 338, 684
BssMI GATC 3 cut(s) 631, 880, 1003
BssSI CACGAG 1 cut(s) 384
BssT1I CCWWGG 3 cut(s) 8, 338, 684
Bst2BI CACGAG 1 cut(s) 384
Bst4CI ACNGT 4 cut(s) 97, 412, 697, 765
Bst6I CTCTTC 3 cut(s) 178, 426, 622
BstAFI CTTAAG 1 cut(s) 482
BstAPI GCANNNNNTGC 1 cut(s) 957
BstAUI TGTACA 1 cut(s) 669
BstBAI YACGTR 1 cut(s) 836
BstC8I GCNNGC 3 cut(s) 215, 446, 958
BstDEI CTNAG 3 cut(s) 32, 195, 804
BstDSI CCRYGG 1 cut(s) 684
BstENI CCTNNNNNAGG 1 cut(s) 902
BstF5I GGATG 1 cut(s) 82
BstFNI CGCG 1 cut(s) 231
BstH2I RGCGCY 1 cut(s) 39
BstHHI GCGC 2 cut(s) 38, 504
BstKTI GATC 3 cut(s) 634, 883, 1006
BstMAI GTCTC 5 cut(s) 191, 275, 619, 754, 988
BstMBI GATC 3 cut(s) 631, 880, 1003
BstMCI CGRYCG 1 cut(s) 61
BstMWI GCNNNNNNNGC 5 cut(s) 33, 389, 508, 800, 957
BstNSI RCATGY 2 cut(s) 728, 960
BstSLI GKGCMC 1 cut(s) 605
BstUI CGCG 1 cut(s) 231
BstV1I GCAGC 6 cut(s) 14, 28, 800, 803, 932, 935
BstV2I GAAGAC 2 cut(s) 757, 873
BstX2I RGATCY 1 cut(s) 1003
BstYI RGATCY 1 cut(s) 1003
BstZI CGGCCG 1 cut(s) 58
BsuRI GGCC 2 cut(s) 60, 603
BtgI CCRYGG 1 cut(s) 684
BtsCI GGATG 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 1027
Cac8I GCNNGC 3 cut(s) 215, 446, 958
CfoI GCGC 2 cut(s) 38, 504
Cfr13I GGNCC 2 cut(s) 601, 602
CseI GACGC 3 cut(s) 450, 794, 878
Csp6I GTAC 5 cut(s) 86, 296, 452, 670, 910
CviAII CATG 4 cut(s) 371, 685, 725, 957
CviQI GTAC 5 cut(s) 86, 296, 452, 670, 910
DdeI CTNAG 3 cut(s) 32, 195, 804
DpnI GATC 3 cut(s) 633, 882, 1005
DpnII GATC 3 cut(s) 631, 880, 1003
DriI GACNNNNNGTC 2 cut(s) 978, 1023
EaeI YGGCCR 1 cut(s) 58
EagI CGGCCG 1 cut(s) 58
Eam1104I CTCTTC 3 cut(s) 178, 426, 622
Eam1105I GACNNNNNGTC 2 cut(s) 978, 1023
EarI CTCTTC 3 cut(s) 178, 426, 622
EciI GGCGGA 2 cut(s) 269, 772
Ecl136II GAGCTC 1 cut(s) 383
EclXI CGGCCG 1 cut(s) 58
Eco130I CCWWGG 3 cut(s) 8, 338, 684
Eco24I GRGCYC 2 cut(s) 385, 605
Eco52I CGGCCG 1 cut(s) 58
Eco53kI GAGCTC 1 cut(s) 383
Eco57I CTGAAG 1 cut(s) 102
Eco72I CACGTG 1 cut(s) 836
EcoICRI GAGCTC 1 cut(s) 383
EcoNI CCTNNNNNAGG 1 cut(s) 902
EcoO109I RGGNCCY 2 cut(s) 601, 602
EcoRI GAATTC 1 cut(s) 575
EcoT14I CCWWGG 3 cut(s) 8, 338, 684
EcoT38I GRGCYC 2 cut(s) 385, 605
ErhI CCWWGG 3 cut(s) 8, 338, 684
Esp3I CGTCTC 3 cut(s) 275, 619, 988
FaeI CATG 4 cut(s) 374, 688, 728, 960
FaqI GGGAC 3 cut(s) 370, 844, 911
FatI CATG 4 cut(s) 370, 684, 724, 956
FauNDI CATATG 1 cut(s) 939
Fnu4HI GCNGC 7 cut(s) 28, 39, 42, 789, 792, 946, 949
FokI GGATG 1 cut(s) 89
FriOI GRGCYC 2 cut(s) 385, 605
Fsp4HI GCNGC 7 cut(s) 28, 39, 42, 789, 792, 946, 949
FspBI CTAG 5 cut(s) 102, 137, 743, 809, 899
GlaI GCGC 2 cut(s) 37, 503
GluI GCNGC 7 cut(s) 28, 39, 42, 789, 792, 946, 949
HaeII RGCGCY 1 cut(s) 39
HaeIII GGCC 2 cut(s) 60, 603
HapII CCGG 1 cut(s) 61
HgaI GACGC 3 cut(s) 450, 794, 878
HhaI GCGC 2 cut(s) 38, 504
Hin1II CATG 4 cut(s) 374, 688, 728, 960
Hin6I GCGC 2 cut(s) 36, 502
HinP1I GCGC 2 cut(s) 36, 502
HinfI GANTC 7 cut(s) 4, 154, 186, 434, 583, 734, 851
HpaII CCGG 1 cut(s) 61
HphI GGTGA 1 cut(s) 560
Hpy166II GTNNAC 1 cut(s) 983
Hpy188I TCNGA 3 cut(s) 196, 850, 993
Hpy188III TCNNGA 7 cut(s) 180, 268, 347, 438, 580, 743, 878
Hpy8I GTNNAC 1 cut(s) 983
Hpy99I CGWCG 1 cut(s) 397
HpyAV CCTTC 1 cut(s) 812
HpyCH4III ACNGT 4 cut(s) 97, 412, 697, 765
HpyCH4IV ACGT 2 cut(s) 612, 835
HpyCH4V TGCA 1 cut(s) 951
HpyF10VI GCNNNNNNNGC 5 cut(s) 33, 389, 508, 800, 957
HpyF3I CTNAG 3 cut(s) 32, 195, 804
HpySE526I ACGT 2 cut(s) 612, 835
Hsp92II CATG 4 cut(s) 374, 688, 728, 960
HspAI GCGC 2 cut(s) 36, 502
Kzo9I GATC 3 cut(s) 631, 880, 1003
LmnI GCTCC 2 cut(s) 380, 965
Lsp1109I GCAGC 6 cut(s) 14, 28, 800, 803, 932, 935
LweI GCATC 3 cut(s) 67, 303, 477
MaeI CTAG 5 cut(s) 102, 137, 743, 809, 899
MaeII ACGT 2 cut(s) 612, 835
MaeIII GTNAC 4 cut(s) 19, 97, 765, 1025
MalI GATC 3 cut(s) 633, 882, 1005
MboI GATC 3 cut(s) 631, 880, 1003
MboII GAAGA 9 cut(s) 44, 195, 257, 443, 464, 509, 609, 762, 878
MfeI CAATTG 2 cut(s) 131, 540
MflI RGATCY 1 cut(s) 1003
MhlI GDGCHC 2 cut(s) 385, 605
MluCI AATT 6 cut(s) 131, 140, 540, 575, 646, 714
MlyI GAGTC 3 cut(s) 195, 443, 728
MmeI TCCRAC 2 cut(s) 545, 971
MnlI CCTC 6 cut(s) 41, 325, 449, 544, 691, 973
MseI TTAA 4 cut(s) 108, 483, 498, 1014
MspA1I CMGCKG 2 cut(s) 41, 978
MspCI CTTAAG 1 cut(s) 482
MspI CCGG 1 cut(s) 61
MunI CAATTG 2 cut(s) 131, 540
MvnI CGCG 1 cut(s) 231
MwoI GCNNNNNNNGC 5 cut(s) 33, 389, 508, 800, 957
NcoI CCATGG 1 cut(s) 684
NdeI CATATG 1 cut(s) 939
NdeII GATC 3 cut(s) 631, 880, 1003
NlaIII CATG 4 cut(s) 374, 688, 728, 960
NlaIV GGNNCC 3 cut(s) 336, 602, 603
NmeAIII GCCGAG 1 cut(s) 36
NmuCI GTSAC 2 cut(s) 97, 1025
NspI RCATGY 2 cut(s) 728, 960
PaeI GCATGC 1 cut(s) 960
PfeI GAWTC 4 cut(s) 4, 154, 583, 851
PflMI CCANNNNNTGG 1 cut(s) 376
PkrI GCNGC 7 cut(s) 29, 40, 43, 790, 793, 947, 950
PleI GAGTC 3 cut(s) 194, 442, 728
PmaCI CACGTG 1 cut(s) 836
PmlI CACGTG 1 cut(s) 836
PpsI GAGTC 3 cut(s) 194, 442, 728
Ppu21I YACGTR 1 cut(s) 836
Psp124BI GAGCTC 1 cut(s) 385
PspCI CACGTG 1 cut(s) 836
PspN4I GGNNCC 3 cut(s) 336, 602, 603
PspOMI GGGCCC 1 cut(s) 601
PspPI GGNCC 2 cut(s) 601, 602
PsuI RGATCY 1 cut(s) 1003
PvuII CAGCTG 1 cut(s) 978
RsaI GTAC 5 cut(s) 87, 297, 453, 671, 911
RsaNI GTAC 5 cut(s) 86, 296, 452, 670, 910
SacI GAGCTC 1 cut(s) 385
SaqAI TTAA 4 cut(s) 108, 483, 498, 1014
SatI GCNGC 7 cut(s) 28, 39, 42, 789, 792, 946, 949
Sau3AI GATC 3 cut(s) 631, 880, 1003
Sau96I GGNCC 2 cut(s) 601, 602
ScaI AGTACT 1 cut(s) 87
SchI GAGTC 3 cut(s) 195, 443, 728
SduI GDGCHC 2 cut(s) 385, 605
SfaNI GCATC 3 cut(s) 67, 303, 477
SmlI CTYRAG 2 cut(s) 116, 482
SmoI CTYRAG 2 cut(s) 116, 482
SphI GCATGC 1 cut(s) 960
Sse9I AATT 6 cut(s) 131, 140, 540, 575, 646, 714
SsiI CCGC 8 cut(s) 39, 173, 231, 254, 533, 757, 954, 1010
SspMI CTAG 5 cut(s) 102, 137, 743, 809, 899
SstI GAGCTC 1 cut(s) 385
StyI CCWWGG 3 cut(s) 8, 338, 684
TaaI ACNGT 4 cut(s) 97, 412, 697, 765
TaiI ACGT 2 cut(s) 615, 838
TaqI TCGA 2 cut(s) 90, 630
TasI AATT 6 cut(s) 131, 140, 540, 575, 646, 714
TatI WGTACW 3 cut(s) 85, 669, 909
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 4 cut(s) 4, 154, 583, 851
Tru1I TTAA 4 cut(s) 108, 483, 498, 1014
Tru9I TTAA 4 cut(s) 108, 483, 498, 1014
TseFI GTSAC 2 cut(s) 97, 1025
TseI GCWGC 6 cut(s) 27, 41, 788, 791, 945, 948
Tsp45I GTSAC 2 cut(s) 97, 1025
TspDTI ATGAA 1 cut(s) 154
Van91I CCANNNNNTGG 1 cut(s) 376
Vha464I CTTAAG 1 cut(s) 482
XagI CCTNNNNNAGG 1 cut(s) 902
XapI RAATTY 1 cut(s) 575
XbaI TCTAGA 1 cut(s) 742
XceI RCATGY 2 cut(s) 728, 960
XspI CTAG 5 cut(s) 102, 137, 743, 809, 899
ZrmI AGTACT 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.