Rmu_sc0002484.1_g000001

Mitochondrial ubiquitin ligase activator of NFKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002484.1
OG0011309
Physical Location & Seq
Forward (+)
5734 .. 9221
3488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002484.1_g000001.1.cds

Sequence Viewer

Length: 933 bp
atgtctgagctcgatgtccagattcctactgcctttgatatctatctgagctactcggggagcatcacaagccagttgaaggaattggctaaattattggattctgagtctatattaccattggtggttgcgatttcggggagagttagctctgacactcccatcacctgtgagttcggtggtttgagaggtgtagttgtggaagaaacggattctgctttgatgctgtcgatgagtaaagaagtcccctggtatctggatgatgggactggtcgcgtgcatgtggtgggagctcgaggtgccacaggcttttcattgccggttgcaagtgaggtatttgaagagtcagggcgatcccttgtacgagggacattagattatcttcaaggcctcaagatgcttggagtgaaacgaattgagagggtattaccaactggtacttctttgagtgttgttggtgagatggacattggtagcattcgaattcaacgaccccataaaggaccattttatatctcccccaaaaccattgatcagcttattgcaaacctggggaaatgggcaaggttgtacaaatatgcatctttgggtttgagtgtgtttggtgtttatttgattgctaagcattccattcactacatcatggaaagaaagcggcgttgggaattacagaaaagggttcttgctgcagctactaaaagatccggggaagatgatgaaggttcacttgaaagagatgataatgcatcagatgctcccaagaaagaccgtctgatgcccgatttatgtgtgatatgccttgagcaggagtataatgcggtttttgtcccgtgtggtcatatgtgctgttgtacaacctgctccttgcacctgaccaattgtcctctctgccggcgacgaattgaacagttggttaagactttctgccattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GIDE zf-C3HC4_3

Protein Analysis

310

Amino Acids

34.37

Weight (kDa)

7.02

Isoelectric Point (pI)

53.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011309)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63900
fragaria_vesca FvH4_2g24080 FvH4_2g24080
malus_domestica MD03G1270200.v1.1 MD11G1291200.v1.1
prunus_persica Prupe.8G246900_v2.0.a1
pyrus_communis pycom03g21540 pycom11g25810
rosa_chinensis RchiOBHm_Chr6g0291861
rosa_laevigata RLG00000012082
rosa_multiflora Rmu_sc0001043.1_g000019 Rmu_sc0002484.1_g000001
rosa_roxburghii Rroxscaffold_7G00175690
rosa_rugosa Rorug06G0221700
rosa_samantha Rh6AG334800 Rh6BG342300 Rh6CG348100 Rh6DG335100
rosa_wichuraiana Rw6G028920 Rw6G029140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 866
AccB1I GGYRCC 1 cut(s) 299
AccII CGCG 1 cut(s) 276
AciI CCGC 2 cut(s) 655, 818
AclWI GGATC 2 cut(s) 348, 696
AcsI RAATTY 1 cut(s) 483
AfaI GTAC 4 cut(s) 363, 439, 572, 853
AfiI CCNNNNNNNGG 3 cut(s) 79, 500, 805
AgsI TTSAA 6 cut(s) 79, 341, 386, 488, 731, 905
AhdI GACNNNNNGTC 1 cut(s) 879
AjnI CCWGG 2 cut(s) 248, 549
AjuI GAANNNNNNNTTGG 4 cut(s) 424, 456, 643, 675
AluBI AGCT 6 cut(s) 10, 51, 150, 293, 538, 692
AluI AGCT 6 cut(s) 10, 51, 150, 293, 538, 692
Alw21I GWGCWC 2 cut(s) 12, 295
AlwI GGATC 2 cut(s) 348, 696
Ama87I CYCGRG 2 cut(s) 55, 294
AoxI GGCC 1 cut(s) 388
ApeKI GCWGC 2 cut(s) 686, 689
ApoI RAATTY 1 cut(s) 483
AspS9I GGNCC 1 cut(s) 503
AsuC2I CCSGG 1 cut(s) 706
AsuHPI GGTGA 2 cut(s) 157, 470
AsuII TTCGAA 1 cut(s) 481
AvaI CYCGRG 2 cut(s) 55, 294
AvaII GGWCC 1 cut(s) 503
BanI GGYRCC 1 cut(s) 299
BanII GRGCYC 2 cut(s) 12, 295
Bbv12I GWGCWC 2 cut(s) 12, 295
BbvI GCAGC 2 cut(s) 673, 701
BccI CCATC 3 cut(s) 170, 257, 457
BciT130I CCWGG 2 cut(s) 250, 551
BclI TGATCA 1 cut(s) 532
BcnI CCSGG 1 cut(s) 706
BfmI CTRYAG 1 cut(s) 687
BfuAI ACCTGC 1 cut(s) 866
BisI GCNGC 3 cut(s) 656, 687, 690
BlpI GCTNAGC 1 cut(s) 621
BlsI GCNGC 3 cut(s) 657, 688, 691
Bme1390I CCNGG 3 cut(s) 250, 551, 706
Bme18I GGWCC 1 cut(s) 503
BmeRI GACNNNNNGTC 1 cut(s) 879
BmeT110I CYCGRG 2 cut(s) 55, 294
BmgT120I GGNCC 1 cut(s) 503
BmiI GGNNCC 1 cut(s) 301
BmrFI CCNGG 3 cut(s) 250, 551, 706
BmsI GCATC 7 cut(s) 72, 213, 387, 590, 742, 755, 765
Bpu1102I GCTNAGC 1 cut(s) 621
Bpu14I TTCGAA 1 cut(s) 481
BpuEI CTTGAG 2 cut(s) 377, 821
BpuMI CCSGG 1 cut(s) 706
BsaBI GATNNNNATC 1 cut(s) 42
BsaJI CCNNGG 3 cut(s) 248, 550, 705
Bsc4I CCNNNNNNNGG 3 cut(s) 79, 500, 805
Bse118I RCCGGY 2 cut(s) 319, 891
Bse1I ACTGG 3 cut(s) 73, 274, 439
Bse3DI GCAATG 1 cut(s) 314
Bse8I GATNNNNATC 1 cut(s) 42
BseBI CCWGG 2 cut(s) 250, 551
BseDI CCNNGG 3 cut(s) 248, 550, 705
BseGI GGATG 1 cut(s) 265
BseJI GATNNNNATC 1 cut(s) 42
BseLI CCNNNNNNNGG 3 cut(s) 79, 500, 805
BseMI GCAATG 1 cut(s) 314
BseMII CTCAG 2 cut(s) 38, 96
BseNI ACTGG 3 cut(s) 73, 274, 439
BseXI GCAGC 2 cut(s) 673, 701
Bsh1236I CGCG 1 cut(s) 276
BshFI GGCC 1 cut(s) 390
BshNI GGYRCC 1 cut(s) 299
BsiHKAI GWGCWC 2 cut(s) 12, 295
BsiHKCI CYCGRG 2 cut(s) 55, 294
BsiSI CCGG 3 cut(s) 320, 705, 892
BslFI GGGAC 4 cut(s) 230, 280, 382, 812
BslI CCNNNNNNNGG 3 cut(s) 79, 500, 805
BsmFI GGGAC 4 cut(s) 230, 280, 382, 812
BsmI GAATGC 2 cut(s) 477, 625
BsnI GGCC 1 cut(s) 390
BsoBI CYCGRG 2 cut(s) 55, 294
Bsp119I TTCGAA 1 cut(s) 481
Bsp1286I GDGCHC 2 cut(s) 12, 295
Bsp1407I TGTACA 2 cut(s) 570, 851
Bsp143I GATC 3 cut(s) 353, 532, 701
Bsp1720I GCTNAGC 1 cut(s) 621
BspACI CCGC 2 cut(s) 655, 818
BspANI GGCC 1 cut(s) 390
BspCNI CTCAG 2 cut(s) 39, 97
BspFNI CGCG 1 cut(s) 276
BspLI GGNNCC 1 cut(s) 301
BspMAI CTGCAG 1 cut(s) 691
BspMI ACCTGC 1 cut(s) 866
BspPI GGATC 2 cut(s) 348, 696
BspT104I TTCGAA 1 cut(s) 481
BspT107I GGYRCC 1 cut(s) 299
BsrDI GCAATG 1 cut(s) 314
BsrFI RCCGGY 2 cut(s) 319, 891
BsrGI TGTACA 2 cut(s) 570, 851
BsrI ACTGG 3 cut(s) 73, 274, 439
BssAI RCCGGY 2 cut(s) 319, 891
BssECI CCNNGG 3 cut(s) 248, 550, 705
BssMI GATC 3 cut(s) 353, 532, 701
Bst2UI CCWGG 2 cut(s) 250, 551
Bst4CI ACNGT 2 cut(s) 770, 909
Bst6I CTCTTC 1 cut(s) 336
BstAPI GCANNNNNTGC 1 cut(s) 752
BstAUI TGTACA 2 cut(s) 570, 851
BstBI TTCGAA 1 cut(s) 481
BstC8I GCNNGC 2 cut(s) 278, 893
BstDEI CTNAG 4 cut(s) 6, 47, 105, 621
BstENI CCTNNNNNAGG 1 cut(s) 803
BstF5I GGATG 1 cut(s) 265
BstFNI CGCG 1 cut(s) 276
BstKTI GATC 3 cut(s) 356, 535, 704
BstMBI GATC 3 cut(s) 353, 532, 701
BstMWI GCNNNNNNNGC 3 cut(s) 69, 299, 752
BstNI CCWGG 2 cut(s) 250, 551
BstNSI RCATGY 1 cut(s) 284
BstSCI CCNGG 3 cut(s) 248, 549, 704
BstSFI CTRYAG 1 cut(s) 687
BstUI CGCG 1 cut(s) 276
BstV1I GCAGC 2 cut(s) 673, 701
BstX2I RGATCY 1 cut(s) 701
BstYI RGATCY 1 cut(s) 701
BsuRI GGCC 1 cut(s) 390
BtsCI GGATG 1 cut(s) 265
BveI ACCTGC 1 cut(s) 866
Cac8I GCNNGC 2 cut(s) 278, 893
Cfr10I RCCGGY 2 cut(s) 319, 891
Cfr13I GGNCC 1 cut(s) 503
Csp6I GTAC 4 cut(s) 362, 438, 571, 852
CviAII CATG 2 cut(s) 281, 643
CviQI GTAC 4 cut(s) 362, 438, 571, 852
DdeI CTNAG 4 cut(s) 6, 47, 105, 621
DpnI GATC 3 cut(s) 355, 534, 703
DpnII GATC 3 cut(s) 353, 532, 701
DriI GACNNNNNGTC 1 cut(s) 879
Eam1104I CTCTTC 1 cut(s) 336
Eam1105I GACNNNNNGTC 1 cut(s) 879
EarI CTCTTC 1 cut(s) 336
Ecl136II GAGCTC 2 cut(s) 10, 293
Eco147I AGGCCT 1 cut(s) 390
Eco24I GRGCYC 2 cut(s) 12, 295
Eco32I GATATC 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 503
Eco53kI GAGCTC 2 cut(s) 10, 293
Eco88I CYCGRG 2 cut(s) 55, 294
EcoICRI GAGCTC 2 cut(s) 10, 293
EcoNI CCTNNNNNAGG 1 cut(s) 803
EcoRI GAATTC 1 cut(s) 483
EcoRII CCWGG 2 cut(s) 248, 549
EcoRV GATATC 1 cut(s) 40
EcoT22I ATGCAT 2 cut(s) 583, 748
EcoT38I GRGCYC 2 cut(s) 12, 295
FaeI CATG 2 cut(s) 284, 646
FalI AAGNNNNNCTT 2 cut(s) 711, 743
FaqI GGGAC 4 cut(s) 230, 280, 382, 812
FatI CATG 2 cut(s) 280, 642
FauNDI CATATG 1 cut(s) 840
FbaI TGATCA 1 cut(s) 532
Fnu4HI GCNGC 3 cut(s) 656, 687, 690
FokI GGATG 1 cut(s) 272
FriOI GRGCYC 2 cut(s) 12, 295
Fsp4HI GCNGC 3 cut(s) 656, 687, 690
GluI GCNGC 3 cut(s) 656, 687, 690
HaeIII GGCC 1 cut(s) 390
HapII CCGG 3 cut(s) 320, 705, 892
Hin1II CATG 2 cut(s) 284, 646
HinfI GANTC 5 cut(s) 22, 101, 107, 212, 344
HpaII CCGG 3 cut(s) 320, 705, 892
HphI GGTGA 2 cut(s) 157, 470
Hpy166II GTNNAC 1 cut(s) 725
Hpy188I TCNGA 6 cut(s) 7, 48, 106, 154, 751, 774
Hpy188III TCNNGA 3 cut(s) 19, 257, 394
Hpy8I GTNNAC 1 cut(s) 725
Hpy99I CGWCG 1 cut(s) 900
HpyAV CCTTC 2 cut(s) 73, 713
HpyCH4III ACNGT 2 cut(s) 770, 909
HpyCH4V TGCA 7 cut(s) 280, 326, 545, 581, 689, 746, 868
HpyF10VI GCNNNNNNNGC 3 cut(s) 69, 299, 752
HpyF3I CTNAG 4 cut(s) 6, 47, 105, 621
Hsp92II CATG 2 cut(s) 284, 646
KroI GCCGGC 1 cut(s) 891
KroNI GCCGGC 1 cut(s) 893
Ksp22I TGATCA 1 cut(s) 532
Kzo9I GATC 3 cut(s) 353, 532, 701
LmnI GCTCC 4 cut(s) 60, 290, 760, 866
Lsp1109I GCAGC 2 cut(s) 673, 701
LweI GCATC 7 cut(s) 72, 213, 387, 590, 742, 755, 765
MalI GATC 3 cut(s) 355, 534, 703
MboI GATC 3 cut(s) 353, 532, 701
MboII GAAGA 4 cut(s) 215, 353, 374, 722
MfeI CAATTG 1 cut(s) 877
MflI RGATCY 1 cut(s) 701
MhlI GDGCHC 2 cut(s) 12, 295
MluCI AATT 7 cut(s) 83, 92, 414, 483, 665, 877, 900
MlyI GAGTC 2 cut(s) 116, 353
MnlI CCTC 7 cut(s) 182, 290, 325, 359, 401, 414, 894
Mph1103I ATGCAT 2 cut(s) 583, 748
MroNI GCCGGC 1 cut(s) 891
MseI TTAA 2 cut(s) 915, 931
MspI CCGG 3 cut(s) 320, 705, 892
MspR9I CCNGG 3 cut(s) 250, 551, 706
MunI CAATTG 1 cut(s) 877
Mva1269I GAATGC 2 cut(s) 477, 625
MvaI CCWGG 2 cut(s) 250, 551
MvnI CGCG 1 cut(s) 276
MwoI GCNNNNNNNGC 3 cut(s) 69, 299, 752
NaeI GCCGGC 1 cut(s) 893
NciI CCSGG 1 cut(s) 706
NdeI CATATG 1 cut(s) 840
NdeII GATC 3 cut(s) 353, 532, 701
NgoMIV GCCGGC 1 cut(s) 891
NlaIII CATG 2 cut(s) 284, 646
NlaIV GGNNCC 1 cut(s) 301
NsiI ATGCAT 2 cut(s) 583, 748
NspI RCATGY 1 cut(s) 284
NspV TTCGAA 1 cut(s) 481
PaeR7I CTCGAG 1 cut(s) 294
PceI AGGCCT 1 cut(s) 390
PcsI WCGNNNNNNNCGW 1 cut(s) 487
PctI GAATGC 2 cut(s) 477, 625
PdiI GCCGGC 1 cut(s) 893
PfeI GAWTC 3 cut(s) 22, 101, 212
PkrI GCNGC 3 cut(s) 657, 688, 691
PleI GAGTC 2 cut(s) 115, 352
PpsI GAGTC 2 cut(s) 115, 352
Psp124BI GAGCTC 2 cut(s) 12, 295
Psp6I CCWGG 2 cut(s) 248, 549
PspGI CCWGG 2 cut(s) 248, 549
PspN4I GGNNCC 1 cut(s) 301
PspPI GGNCC 1 cut(s) 503
PspXI VCTCGAGB 1 cut(s) 294
PstI CTGCAG 1 cut(s) 691
PsuI RGATCY 1 cut(s) 701
RsaI GTAC 4 cut(s) 363, 439, 572, 853
RsaNI GTAC 4 cut(s) 362, 438, 571, 852
SacI GAGCTC 2 cut(s) 12, 295
SaqAI TTAA 2 cut(s) 915, 931
SatI GCNGC 3 cut(s) 656, 687, 690
Sau3AI GATC 3 cut(s) 353, 532, 701
Sau96I GGNCC 1 cut(s) 503
SchI GAGTC 2 cut(s) 116, 353
ScrFI CCNGG 3 cut(s) 250, 551, 706
SduI GDGCHC 2 cut(s) 12, 295
SfaNI GCATC 7 cut(s) 72, 213, 387, 590, 742, 755, 765
SfcI CTRYAG 1 cut(s) 687
Sfr274I CTCGAG 1 cut(s) 294
SfuI TTCGAA 1 cut(s) 481
SinI GGWCC 1 cut(s) 503
SlaI CTCGAG 1 cut(s) 294
SmlI CTYRAG 3 cut(s) 294, 392, 800
SmoI CTYRAG 3 cut(s) 294, 392, 800
Sse9I AATT 7 cut(s) 83, 92, 414, 483, 665, 877, 900
SseBI AGGCCT 1 cut(s) 390
SsiI CCGC 2 cut(s) 655, 818
SstI GAGCTC 2 cut(s) 12, 295
StuI AGGCCT 1 cut(s) 390
StyD4I CCNGG 3 cut(s) 248, 549, 704
TaaI ACNGT 2 cut(s) 770, 909
TaqI TCGA 4 cut(s) 12, 230, 295, 481
TasI AATT 7 cut(s) 83, 92, 414, 483, 665, 877, 900
TatI WGTACW 2 cut(s) 570, 851
TauI GCSGC 1 cut(s) 658
TfiI GAWTC 3 cut(s) 22, 101, 212
Tru1I TTAA 2 cut(s) 915, 931
Tru9I TTAA 2 cut(s) 915, 931
TseI GCWGC 2 cut(s) 686, 689
TspDTI ATGAA 2 cut(s) 303, 732
TspGWI ACGGA 1 cut(s) 224
VpaK11BI GGWCC 1 cut(s) 503
XagI CCTNNNNNAGG 1 cut(s) 803
XapI RAATTY 1 cut(s) 483
XceI RCATGY 1 cut(s) 284
XhoI CTCGAG 1 cut(s) 294
Zsp2I ATGCAT 2 cut(s) 583, 748
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.