Rmu_sc0001043.1_g000019

Mitochondrial ubiquitin ligase activator of NFKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001043.1
OG0011309
Physical Location & Seq
Forward (+)
79913 .. 82461
2549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001043.1_g000019.1.cds

Sequence Viewer

Length: 981 bp
atgctaccttggggtggattaagctgttgtttgagtgctgctgctctctatcttctcggcagaagcagtggcagggatgctgatattcttaggacagccactcgggtcagccagttgaaggaattggctaaattgttggattcagagtctatattaccattggtggttgcgatttcggggagagttagctctgacactcccatcacctgtgagttcagtggtttgagaggtgtagttgtggaagaaacggattctgctttgatgctgtcgatgagtaaagaagtcccctggtatctggatgatgggactggtcgcgtgcatgtggtgggagctcgaggtgccacagacttttcattgccggttgcaagtgaggtatttgaagagtcagggcgatcccttgtacgagggacattagattatcttcaaggcctcaagatgcttggagtgaaacgaattgagagggtattaccaactggtacttctttgagtgttgttggtgaggctgttaaagatgacattggtaccattcgaattcaacgaccccataaaggaccattttatatctcccccaaaaccattgatcagcttattgcaaacctggggaaatgggcaaggttgtacaaatatgcatctttgggtttgagtgtgtttggtgtttatttgattgctaagcattccgttcactacatcatggaaagaaagcggcgttgggaattacagaaaagggttcttgctgcagctgctaaaagatccggggaagatgatgaaggttcacttgaaagagatgataatgcatcagatgctcccaagaaagaccgtctgatgcccgatttatgtgtgatatgccttgagcaggagtataatgcggtttttgtcccgtgtggtcatatgtgctgttgtacaacctgctccttgcacctgaccaattgtcctctctgccggcgacgaattgaacaggtggttaagactttccgccattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GIDE zf-C3HC4_3

Protein Analysis

326

Amino Acids

35.99

Weight (kDa)

8.55

Isoelectric Point (pI)

52.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011309)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63900
fragaria_vesca FvH4_2g24080 FvH4_2g24080
malus_domestica MD03G1270200.v1.1 MD11G1291200.v1.1
prunus_persica Prupe.8G246900_v2.0.a1
pyrus_communis pycom03g21540 pycom11g25810
rosa_chinensis RchiOBHm_Chr6g0291861
rosa_laevigata RLG00000012082
rosa_multiflora Rmu_sc0001043.1_g000019 Rmu_sc0002484.1_g000001
rosa_roxburghii Rroxscaffold_7G00175690
rosa_rugosa Rorug06G0221700
rosa_samantha Rh6AG334800 Rh6BG342300 Rh6CG348100 Rh6DG335100
rosa_wichuraiana Rw6G028920 Rw6G029140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 914
Acc65I GGTACC 1 cut(s) 521
AccB1I GGYRCC 2 cut(s) 338, 521
AccII CGCG 1 cut(s) 315
AciI CCGC 3 cut(s) 703, 866, 973
AclWI GGATC 2 cut(s) 387, 744
AcsI RAATTY 1 cut(s) 531
AfaI GTAC 5 cut(s) 402, 478, 523, 620, 901
AfiI CCNNNNNNNGG 4 cut(s) 14, 118, 548, 853
AgsI TTSAA 6 cut(s) 118, 380, 425, 536, 779, 953
AhdI GACNNNNNGTC 1 cut(s) 927
AjnI CCWGG 2 cut(s) 287, 597
AjuI GAANNNNNNNTTGG 4 cut(s) 463, 495, 691, 723
AluBI AGCT 5 cut(s) 24, 189, 332, 586, 740
AluI AGCT 5 cut(s) 24, 189, 332, 586, 740
Alw21I GWGCWC 1 cut(s) 334
AlwI GGATC 2 cut(s) 387, 744
Ama87I CYCGRG 2 cut(s) 102, 333
AoxI GGCC 1 cut(s) 427
ApeKI GCWGC 5 cut(s) 38, 41, 734, 737, 740
ApoI RAATTY 1 cut(s) 531
Asp718I GGTACC 1 cut(s) 521
AspS9I GGNCC 1 cut(s) 551
AsuC2I CCSGG 1 cut(s) 754
AsuHPI GGTGA 2 cut(s) 196, 509
AsuII TTCGAA 1 cut(s) 529
AvaI CYCGRG 2 cut(s) 102, 333
AvaII GGWCC 1 cut(s) 551
BaeI ACNNNNGTAYC 2 cut(s) 505, 538
BanI GGYRCC 2 cut(s) 338, 521
BanII GRGCYC 1 cut(s) 334
Bbv12I GWGCWC 1 cut(s) 334
BbvI GCAGC 5 cut(s) 25, 28, 721, 727, 749
BccI CCATC 2 cut(s) 209, 296
BciT130I CCWGG 2 cut(s) 289, 599
BclI TGATCA 1 cut(s) 580
BcnI CCSGG 1 cut(s) 754
BfmI CTRYAG 1 cut(s) 735
BfuAI ACCTGC 1 cut(s) 914
BisI GCNGC 6 cut(s) 39, 42, 704, 735, 738, 741
BlpI GCTNAGC 1 cut(s) 669
BlsI GCNGC 6 cut(s) 40, 43, 705, 736, 739, 742
Bme1390I CCNGG 3 cut(s) 289, 599, 754
Bme18I GGWCC 1 cut(s) 551
BmeRI GACNNNNNGTC 1 cut(s) 927
BmeT110I CYCGRG 2 cut(s) 102, 333
BmgT120I GGNCC 1 cut(s) 551
BmiI GGNNCC 2 cut(s) 340, 523
BmrFI CCNGG 3 cut(s) 289, 599, 754
BmsI GCATC 7 cut(s) 67, 252, 426, 638, 790, 803, 813
Bpu1102I GCTNAGC 1 cut(s) 669
Bpu14I TTCGAA 1 cut(s) 529
BpuEI CTTGAG 2 cut(s) 416, 869
BpuMI CCSGG 1 cut(s) 754
BsaJI CCNNGG 4 cut(s) 8, 287, 598, 753
Bsc4I CCNNNNNNNGG 4 cut(s) 14, 118, 548, 853
Bse118I RCCGGY 2 cut(s) 358, 939
Bse1I ACTGG 3 cut(s) 112, 313, 478
Bse3DI GCAATG 1 cut(s) 353
BseBI CCWGG 2 cut(s) 289, 599
BseDI CCNNGG 4 cut(s) 8, 287, 598, 753
BseGI GGATG 2 cut(s) 82, 304
BseLI CCNNNNNNNGG 4 cut(s) 14, 118, 548, 853
BseMI GCAATG 1 cut(s) 353
BseNI ACTGG 3 cut(s) 112, 313, 478
BseXI GCAGC 5 cut(s) 25, 28, 721, 727, 749
Bsh1236I CGCG 1 cut(s) 315
BshFI GGCC 1 cut(s) 429
BshNI GGYRCC 2 cut(s) 338, 521
BsiHKAI GWGCWC 1 cut(s) 334
BsiHKCI CYCGRG 2 cut(s) 102, 333
BsiSI CCGG 3 cut(s) 359, 753, 940
BslFI GGGAC 4 cut(s) 269, 319, 421, 860
BslI CCNNNNNNNGG 4 cut(s) 14, 118, 548, 853
BsmFI GGGAC 4 cut(s) 269, 319, 421, 860
BsmI GAATGC 1 cut(s) 673
BsnI GGCC 1 cut(s) 429
BsoBI CYCGRG 2 cut(s) 102, 333
Bsp119I TTCGAA 1 cut(s) 529
Bsp1286I GDGCHC 1 cut(s) 334
Bsp1407I TGTACA 2 cut(s) 618, 899
Bsp143I GATC 3 cut(s) 392, 580, 749
Bsp1720I GCTNAGC 1 cut(s) 669
BspACI CCGC 3 cut(s) 703, 866, 973
BspANI GGCC 1 cut(s) 429
BspFNI CGCG 1 cut(s) 315
BspLI GGNNCC 2 cut(s) 340, 523
BspMAI CTGCAG 1 cut(s) 739
BspMI ACCTGC 1 cut(s) 914
BspPI GGATC 2 cut(s) 387, 744
BspT104I TTCGAA 1 cut(s) 529
BspT107I GGYRCC 2 cut(s) 338, 521
BsrDI GCAATG 1 cut(s) 353
BsrFI RCCGGY 2 cut(s) 358, 939
BsrGI TGTACA 2 cut(s) 618, 899
BsrI ACTGG 3 cut(s) 112, 313, 478
BssAI RCCGGY 2 cut(s) 358, 939
BssECI CCNNGG 4 cut(s) 8, 287, 598, 753
BssMI GATC 3 cut(s) 392, 580, 749
BssT1I CCWWGG 1 cut(s) 8
Bst2UI CCWGG 2 cut(s) 289, 599
Bst4CI ACNGT 1 cut(s) 818
Bst6I CTCTTC 1 cut(s) 375
BstAPI GCANNNNNTGC 1 cut(s) 800
BstAUI TGTACA 2 cut(s) 618, 899
BstBI TTCGAA 1 cut(s) 529
BstC8I GCNNGC 2 cut(s) 317, 941
BstDEI CTNAG 2 cut(s) 89, 669
BstENI CCTNNNNNAGG 1 cut(s) 851
BstF5I GGATG 2 cut(s) 82, 304
BstFNI CGCG 1 cut(s) 315
BstKTI GATC 3 cut(s) 395, 583, 752
BstMBI GATC 3 cut(s) 392, 580, 749
BstMWI GCNNNNNNNGC 3 cut(s) 338, 740, 800
BstNI CCWGG 2 cut(s) 289, 599
BstNSI RCATGY 1 cut(s) 323
BstSCI CCNGG 3 cut(s) 287, 597, 752
BstSFI CTRYAG 1 cut(s) 735
BstUI CGCG 1 cut(s) 315
BstV1I GCAGC 5 cut(s) 25, 28, 721, 727, 749
BstX2I RGATCY 1 cut(s) 749
BstYI RGATCY 1 cut(s) 749
BsuRI GGCC 1 cut(s) 429
BtsCI GGATG 2 cut(s) 82, 304
BtsI GCAGTG 1 cut(s) 73
BtsIMutI CAGTG 2 cut(s) 73, 223
BveI ACCTGC 1 cut(s) 914
Cac8I GCNNGC 2 cut(s) 317, 941
Cfr10I RCCGGY 2 cut(s) 358, 939
Cfr13I GGNCC 1 cut(s) 551
Csp6I GTAC 5 cut(s) 401, 477, 522, 619, 900
CviAII CATG 2 cut(s) 320, 691
CviQI GTAC 5 cut(s) 401, 477, 522, 619, 900
DdeI CTNAG 2 cut(s) 89, 669
DpnI GATC 3 cut(s) 394, 582, 751
DpnII GATC 3 cut(s) 392, 580, 749
DriI GACNNNNNGTC 1 cut(s) 927
Eam1104I CTCTTC 1 cut(s) 375
Eam1105I GACNNNNNGTC 1 cut(s) 927
EarI CTCTTC 1 cut(s) 375
EciI GGCGGA 1 cut(s) 962
Ecl136II GAGCTC 1 cut(s) 332
Eco130I CCWWGG 1 cut(s) 8
Eco147I AGGCCT 1 cut(s) 429
Eco24I GRGCYC 1 cut(s) 334
Eco47I GGWCC 1 cut(s) 551
Eco53kI GAGCTC 1 cut(s) 332
Eco88I CYCGRG 2 cut(s) 102, 333
EcoICRI GAGCTC 1 cut(s) 332
EcoNI CCTNNNNNAGG 1 cut(s) 851
EcoRI GAATTC 1 cut(s) 531
EcoRII CCWGG 2 cut(s) 287, 597
EcoT14I CCWWGG 1 cut(s) 8
EcoT22I ATGCAT 2 cut(s) 631, 796
EcoT38I GRGCYC 1 cut(s) 334
ErhI CCWWGG 1 cut(s) 8
FaeI CATG 2 cut(s) 323, 694
FalI AAGNNNNNCTT 2 cut(s) 759, 791
FaqI GGGAC 4 cut(s) 269, 319, 421, 860
FatI CATG 2 cut(s) 319, 690
FauNDI CATATG 1 cut(s) 888
FbaI TGATCA 1 cut(s) 580
Fnu4HI GCNGC 6 cut(s) 39, 42, 704, 735, 738, 741
FokI GGATG 2 cut(s) 89, 311
FriOI GRGCYC 1 cut(s) 334
Fsp4HI GCNGC 6 cut(s) 39, 42, 704, 735, 738, 741
GluI GCNGC 6 cut(s) 39, 42, 704, 735, 738, 741
HaeIII GGCC 1 cut(s) 429
HapII CCGG 3 cut(s) 359, 753, 940
Hin1II CATG 2 cut(s) 323, 694
HinfI GANTC 4 cut(s) 140, 146, 251, 383
HpaII CCGG 3 cut(s) 359, 753, 940
HphI GGTGA 2 cut(s) 196, 509
Hpy166II GTNNAC 2 cut(s) 682, 773
Hpy188I TCNGA 4 cut(s) 145, 193, 799, 822
Hpy188III TCNNGA 2 cut(s) 296, 433
Hpy8I GTNNAC 2 cut(s) 682, 773
Hpy99I CGWCG 1 cut(s) 948
HpyAV CCTTC 2 cut(s) 112, 761
HpyCH4III ACNGT 1 cut(s) 818
HpyCH4V TGCA 7 cut(s) 319, 365, 593, 629, 737, 794, 916
HpyF10VI GCNNNNNNNGC 3 cut(s) 338, 740, 800
HpyF3I CTNAG 2 cut(s) 89, 669
Hsp92II CATG 2 cut(s) 323, 694
KpnI GGTACC 1 cut(s) 525
KroI GCCGGC 1 cut(s) 939
KroNI GCCGGC 1 cut(s) 941
Ksp22I TGATCA 1 cut(s) 580
Kzo9I GATC 3 cut(s) 392, 580, 749
LmnI GCTCC 3 cut(s) 329, 808, 914
Lsp1109I GCAGC 5 cut(s) 25, 28, 721, 727, 749
LweI GCATC 7 cut(s) 67, 252, 426, 638, 790, 803, 813
MalI GATC 3 cut(s) 394, 582, 751
MboI GATC 3 cut(s) 392, 580, 749
MboII GAAGA 5 cut(s) 44, 254, 392, 413, 770
MfeI CAATTG 1 cut(s) 925
MflI RGATCY 1 cut(s) 749
MhlI GDGCHC 1 cut(s) 334
MluCI AATT 7 cut(s) 122, 131, 453, 531, 713, 925, 948
MlyI GAGTC 2 cut(s) 155, 392
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 8 cut(s) 221, 329, 364, 398, 440, 453, 493, 942
Mph1103I ATGCAT 2 cut(s) 631, 796
MroNI GCCGGC 1 cut(s) 939
MseI TTAA 4 cut(s) 20, 507, 963, 979
MspA1I CMGCKG 1 cut(s) 740
MspI CCGG 3 cut(s) 359, 753, 940
MspR9I CCNGG 3 cut(s) 289, 599, 754
MunI CAATTG 1 cut(s) 925
Mva1269I GAATGC 1 cut(s) 673
MvaI CCWGG 2 cut(s) 289, 599
MvnI CGCG 1 cut(s) 315
MwoI GCNNNNNNNGC 3 cut(s) 338, 740, 800
NaeI GCCGGC 1 cut(s) 941
NciI CCSGG 1 cut(s) 754
NdeI CATATG 1 cut(s) 888
NdeII GATC 3 cut(s) 392, 580, 749
NgoMIV GCCGGC 1 cut(s) 939
NlaIII CATG 2 cut(s) 323, 694
NlaIV GGNNCC 2 cut(s) 340, 523
NmeAIII GCCGAG 1 cut(s) 36
NsiI ATGCAT 2 cut(s) 631, 796
NspI RCATGY 1 cut(s) 323
NspV TTCGAA 1 cut(s) 529
PaeR7I CTCGAG 1 cut(s) 333
PceI AGGCCT 1 cut(s) 429
PcsI WCGNNNNNNNCGW 1 cut(s) 535
PctI GAATGC 1 cut(s) 673
PdiI GCCGGC 1 cut(s) 941
PfeI GAWTC 2 cut(s) 140, 251
PkrI GCNGC 6 cut(s) 40, 43, 705, 736, 739, 742
PleI GAGTC 2 cut(s) 154, 391
PpsI GAGTC 2 cut(s) 154, 391
Psp124BI GAGCTC 1 cut(s) 334
Psp6I CCWGG 2 cut(s) 287, 597
PspGI CCWGG 2 cut(s) 287, 597
PspN4I GGNNCC 2 cut(s) 340, 523
PspPI GGNCC 1 cut(s) 551
PspXI VCTCGAGB 1 cut(s) 333
PstI CTGCAG 1 cut(s) 739
PsuI RGATCY 1 cut(s) 749
PvuII CAGCTG 1 cut(s) 740
RsaI GTAC 5 cut(s) 402, 478, 523, 620, 901
RsaNI GTAC 5 cut(s) 401, 477, 522, 619, 900
SacI GAGCTC 1 cut(s) 334
SaqAI TTAA 4 cut(s) 20, 507, 963, 979
SatI GCNGC 6 cut(s) 39, 42, 704, 735, 738, 741
Sau3AI GATC 3 cut(s) 392, 580, 749
Sau96I GGNCC 1 cut(s) 551
SchI GAGTC 2 cut(s) 155, 392
ScrFI CCNGG 3 cut(s) 289, 599, 754
SduI GDGCHC 1 cut(s) 334
SfaNI GCATC 7 cut(s) 67, 252, 426, 638, 790, 803, 813
SfcI CTRYAG 1 cut(s) 735
Sfr274I CTCGAG 1 cut(s) 333
SfuI TTCGAA 1 cut(s) 529
SinI GGWCC 1 cut(s) 551
SlaI CTCGAG 1 cut(s) 333
SmlI CTYRAG 3 cut(s) 333, 431, 848
SmoI CTYRAG 3 cut(s) 333, 431, 848
Sse9I AATT 7 cut(s) 122, 131, 453, 531, 713, 925, 948
SseBI AGGCCT 1 cut(s) 429
SsiI CCGC 3 cut(s) 703, 866, 973
SstI GAGCTC 1 cut(s) 334
StuI AGGCCT 1 cut(s) 429
StyD4I CCNGG 3 cut(s) 287, 597, 752
StyI CCWWGG 1 cut(s) 8
TaaI ACNGT 1 cut(s) 818
TaqI TCGA 3 cut(s) 269, 334, 529
TasI AATT 7 cut(s) 122, 131, 453, 531, 713, 925, 948
TatI WGTACW 2 cut(s) 618, 899
TauI GCSGC 1 cut(s) 706
TfiI GAWTC 2 cut(s) 140, 251
Tru1I TTAA 4 cut(s) 20, 507, 963, 979
Tru9I TTAA 4 cut(s) 20, 507, 963, 979
TscAI CASTG 2 cut(s) 73, 223
TseI GCWGC 5 cut(s) 38, 41, 734, 737, 740
TspDTI ATGAA 2 cut(s) 342, 780
TspGWI ACGGA 2 cut(s) 263, 667
TspRI CASTG 2 cut(s) 73, 223
VpaK11BI GGWCC 1 cut(s) 551
XagI CCTNNNNNAGG 1 cut(s) 851
XapI RAATTY 1 cut(s) 531
XceI RCATGY 1 cut(s) 323
XhoI CTCGAG 1 cut(s) 333
Zsp2I ATGCAT 2 cut(s) 631, 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.