MD11G1291200.v1.1

Mitochondrial ubiquitin ligase activator of NFKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0011309
Physical Location & Seq
Forward (+)
41059662 .. 41063099
3438 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1291200.v1.1.491

Sequence Viewer

Length: 1029 bp
ATGCTACCTTGGGGTGGATTGAGTTGTTGTCTGAGTGGAGCTGCTCTTTACCTTCTTGGCAGGAGCAGTGGCAGGGATGCAGAGATTCTTAAATCCGCCACTCGGATTAATCAGTTAAAGGAATTGGCAAAACTGTTGGATTCCGAATTTAGATTGCCAGTGGTGGTTGCAGTTTCGGGGAGAGTTAGCTCTGAAACCCCCATCAACTGTGAGTTCACTGGTTTACGAGGTGTAGTTGTGGAGGAAACGGCAGAACAACATTTTTTGAAACACAATGATGCTGGCTCATGGATACAGGATTCTGCTTTGATGCTTTCAATGAGTAAAGAAGTTCCCTGGTACTTGGATGATGGAACTGGTCGTGTGTTTGTGGTGGGAGCACGAGCTGCCACAGGATTTGTATTGCCGGTTGCAAGTGAGGTATTTGAAGAGTCAGGACGATCCCTCGTACGTGGGACATTAGATTATCTCCAAGGCCTCAAGATGCTTGGAGTCAAACGAATTGAGAGGGTACTTCCAACCGGTACTTCTATGAGTGTTGTTGGTGAGGCTGTCAAAGATGACATTGGTACCATTCGGATTCAACGACCTCAGAAAGGGCCATTTTATGTCTCTCCCAAAACCATTGATCAGCTTATTGCAAACCTTGGAAAATGGGCAAGGTGGTACAAATATGCATCTGTGGGTTTGACCGTGTTTGGTGTTTATTTGGTTGCTAAGCATTCTATCCAATACATCATTGAGAGAAAGCGCCGTTGGGAATTGCAGAAAAGGGTTCTTGCTGCAGCTGCTAAAAGATCTGGGGAAGATGGTGAAGGTTCAAACGAAAAAGATGATGGTGCATCAGATGGAAACAAGAGAGACCGTATGATGCCCGATTTATGTGTGATATGCCTTGAACAGGATTATAATGCGGTTTTTGTCCCGTGTGGTCATATGTGCTGTTGTACAACTTGCTCCTTGCACCTGACCAGCTGTCCTCTCTGCCGGCGACGAATTGATCAGGCTGTAAAGACTTTCCGCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GIDE zf-C3HC4_3

Protein Analysis

343

Amino Acids

37.81

Weight (kDa)

8.77

Isoelectric Point (pI)

53.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GIDE PF12483 85 - 234 5.6e-40 E3 Ubiquitin ligase
zf-C3HC4_3 PF13920 293 - 335 6.8e-14 Zinc finger, C3HC4 type (RING finger)
Prok-RING_4 PF14447 295 - 336 1.1e-07 Prokaryotic RING finger family 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011309)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63900
fragaria_vesca FvH4_2g24080 FvH4_2g24080
malus_domestica MD03G1270200.v1.1 MD11G1291200.v1.1
prunus_persica Prupe.8G246900_v2.0.a1
pyrus_communis pycom03g21540 pycom11g25810
rosa_chinensis RchiOBHm_Chr6g0291861
rosa_laevigata RLG00000012082
rosa_multiflora Rmu_sc0001043.1_g000019 Rmu_sc0002484.1_g000001
rosa_roxburghii Rroxscaffold_7G00175690
rosa_rugosa Rorug06G0221700
rosa_samantha Rh6AG334800 Rh6BG342300 Rh6CG348100 Rh6DG335100
rosa_wichuraiana Rw6G028920 Rw6G029140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 909
Acc65I GGTACC 1 cut(s) 569
AccB1I GGYRCC 1 cut(s) 569
AciI CCGC 3 cut(s) 96, 914, 1021
AclWI GGATC 1 cut(s) 435
AcsI RAATTY 1 cut(s) 146
AfaI GTAC 7 cut(s) 341, 450, 513, 526, 571, 668, 949
AfiI CCNNNNNNNGG 4 cut(s) 14, 102, 596, 901
AgeI ACCGGT 1 cut(s) 521
AgsI TTSAA 6 cut(s) 268, 318, 428, 584, 822, 899
AhdI GACNNNNNGTC 1 cut(s) 975
AjnI CCWGG 1 cut(s) 335
AjuI GAANNNNNNNTTGG 4 cut(s) 511, 543, 739, 771
AluBI AGCT 6 cut(s) 41, 189, 386, 634, 788, 975
AluI AGCT 6 cut(s) 41, 189, 386, 634, 788, 975
Alw21I GWGCWC 1 cut(s) 382
Alw26I GTCTC 2 cut(s) 616, 855
AlwI GGATC 1 cut(s) 435
AoxI GGCC 2 cut(s) 475, 599
ApeKI GCWGC 5 cut(s) 41, 386, 782, 785, 788
ApoI RAATTY 1 cut(s) 146
AseI ATTAAT 1 cut(s) 108
AsiGI ACCGGT 1 cut(s) 521
Asp718I GGTACC 1 cut(s) 569
AspLEI GCGC 1 cut(s) 753
AspS9I GGNCC 1 cut(s) 599
AsuHPI GGTGA 2 cut(s) 557, 824
BaeI ACNNNNGTAYC 2 cut(s) 553, 586
BanI GGYRCC 1 cut(s) 569
BauI CACGAG 1 cut(s) 381
Bbv12I GWGCWC 1 cut(s) 382
BbvI GCAGC 5 cut(s) 28, 373, 769, 775, 797
BccI CCATC 5 cut(s) 209, 344, 803, 830, 842
BceAI ACGGC 2 cut(s) 264, 738
BciT130I CCWGG 1 cut(s) 337
BciVI GTATCC 1 cut(s) 285
BclI TGATCA 2 cut(s) 628, 1000
BcoDI GTCTC 2 cut(s) 616, 855
BfmI CTRYAG 1 cut(s) 783
BfoI RGCGCY 1 cut(s) 754
BfuI GTATCC 1 cut(s) 285
BglII AGATCT 1 cut(s) 797
BisI GCNGC 5 cut(s) 42, 387, 783, 786, 789
BlpI GCTNAGC 1 cut(s) 717
BlsI GCNGC 5 cut(s) 43, 388, 784, 787, 790
Bme1390I CCNGG 1 cut(s) 337
BmeRI GACNNNNNGTC 1 cut(s) 975
BmgT120I GGNCC 1 cut(s) 599
BmiI GGNNCC 1 cut(s) 571
BmrFI CCNGG 1 cut(s) 337
BmsI GCATC 7 cut(s) 67, 268, 300, 474, 686, 851, 861
Bpu1102I GCTNAGC 1 cut(s) 717
BpuEI CTTGAG 1 cut(s) 464
BsaAI YACGTR 1 cut(s) 452
BsaI GGTCTC 1 cut(s) 855
BsaJI CCNNGG 4 cut(s) 8, 335, 472, 646
BsaWI WCCGGW 1 cut(s) 521
Bsc4I CCNNNNNNNGG 4 cut(s) 14, 102, 596, 901
Bse118I RCCGGY 3 cut(s) 406, 521, 987
Bse1I ACTGG 3 cut(s) 158, 223, 361
BseBI CCWGG 1 cut(s) 337
BseDI CCNNGG 4 cut(s) 8, 335, 472, 646
BseGI GGATG 2 cut(s) 82, 352
BseLI CCNNNNNNNGG 4 cut(s) 14, 102, 596, 901
BseMII CTCAG 2 cut(s) 23, 605
BseNI ACTGG 3 cut(s) 158, 223, 361
BseXI GCAGC 5 cut(s) 28, 373, 769, 775, 797
BshFI GGCC 2 cut(s) 477, 601
BshNI GGYRCC 1 cut(s) 569
BshTI ACCGGT 1 cut(s) 521
BsiHKAI GWGCWC 1 cut(s) 382
BsiSI CCGG 3 cut(s) 407, 522, 988
BsiWI CGTACG 1 cut(s) 448
BslFI GGGAC 2 cut(s) 469, 908
BslI CCNNNNNNNGG 4 cut(s) 14, 102, 596, 901
BsmAI GTCTC 2 cut(s) 616, 855
BsmFI GGGAC 2 cut(s) 469, 908
BsmI GAATGC 1 cut(s) 721
BsnI GGCC 2 cut(s) 477, 601
Bso31I GGTCTC 1 cut(s) 855
Bsp1286I GDGCHC 1 cut(s) 382
Bsp1407I TGTACA 1 cut(s) 947
Bsp143I GATC 4 cut(s) 440, 628, 797, 1000
Bsp1720I GCTNAGC 1 cut(s) 717
BspACI CCGC 3 cut(s) 96, 914, 1021
BspANI GGCC 2 cut(s) 477, 601
BspCNI CTCAG 2 cut(s) 24, 604
BspLI GGNNCC 1 cut(s) 571
BspMAI CTGCAG 1 cut(s) 787
BspPI GGATC 1 cut(s) 435
BspT107I GGYRCC 1 cut(s) 569
BspTNI GGTCTC 1 cut(s) 855
BsrFI RCCGGY 3 cut(s) 406, 521, 987
BsrGI TGTACA 1 cut(s) 947
BsrI ACTGG 3 cut(s) 158, 223, 361
BssAI RCCGGY 3 cut(s) 406, 521, 987
BssECI CCNNGG 4 cut(s) 8, 335, 472, 646
BssMI GATC 4 cut(s) 440, 628, 797, 1000
BssSI CACGAG 1 cut(s) 381
BssT1I CCWWGG 3 cut(s) 8, 472, 646
Bst2BI CACGAG 1 cut(s) 381
Bst2UI CCWGG 1 cut(s) 337
Bst4CI ACNGT 4 cut(s) 135, 209, 694, 866
Bst6I CTCTTC 1 cut(s) 423
BstAPI GCANNNNNTGC 1 cut(s) 386
BstAUI TGTACA 1 cut(s) 947
BstBAI YACGTR 1 cut(s) 452
BstC8I GCNNGC 2 cut(s) 283, 989
BstDEI CTNAG 3 cut(s) 32, 591, 717
BstENI CCTNNNNNAGG 2 cut(s) 594, 899
BstF5I GGATG 2 cut(s) 82, 352
BstH2I RGCGCY 1 cut(s) 754
BstHHI GCGC 1 cut(s) 753
BstKTI GATC 4 cut(s) 443, 631, 800, 1003
BstMAI GTCTC 2 cut(s) 616, 855
BstMBI GATC 4 cut(s) 440, 628, 797, 1000
BstMWI GCNNNNNNNGC 2 cut(s) 386, 788
BstNI CCWGG 1 cut(s) 337
BstSCI CCNGG 1 cut(s) 335
BstSFI CTRYAG 1 cut(s) 783
BstV1I GCAGC 5 cut(s) 28, 373, 769, 775, 797
BstX2I RGATCY 1 cut(s) 797
BstYI RGATCY 1 cut(s) 797
BsuI GTATCC 1 cut(s) 285
BsuRI GGCC 2 cut(s) 477, 601
BtsCI GGATG 2 cut(s) 82, 352
BtsI GCAGTG 1 cut(s) 73
BtsIMutI CAGTG 3 cut(s) 73, 165, 216
Cac8I GCNNGC 2 cut(s) 283, 989
CfoI GCGC 1 cut(s) 753
Cfr10I RCCGGY 3 cut(s) 406, 521, 987
Cfr13I GGNCC 1 cut(s) 599
Csp6I GTAC 7 cut(s) 340, 449, 512, 525, 570, 667, 948
CspAI ACCGGT 1 cut(s) 521
CspCI CAANNNNNGTGG 2 cut(s) 379, 414
CviAII CATG 1 cut(s) 288
CviQI GTAC 7 cut(s) 340, 449, 512, 525, 570, 667, 948
DdeI CTNAG 3 cut(s) 32, 591, 717
DpnI GATC 4 cut(s) 442, 630, 799, 1002
DpnII GATC 4 cut(s) 440, 628, 797, 1000
DriI GACNNNNNGTC 1 cut(s) 975
Eam1104I CTCTTC 1 cut(s) 423
Eam1105I GACNNNNNGTC 1 cut(s) 975
EarI CTCTTC 1 cut(s) 423
EciI GGCGGA 2 cut(s) 85, 1010
Eco130I CCWWGG 3 cut(s) 8, 472, 646
Eco147I AGGCCT 1 cut(s) 477
Eco31I GGTCTC 1 cut(s) 855
EcoNI CCTNNNNNAGG 2 cut(s) 594, 899
EcoRII CCWGG 1 cut(s) 335
EcoT14I CCWWGG 3 cut(s) 8, 472, 646
EcoT22I ATGCAT 1 cut(s) 679
ErhI CCWWGG 3 cut(s) 8, 472, 646
FaeI CATG 1 cut(s) 291
FaqI GGGAC 2 cut(s) 469, 908
FatI CATG 1 cut(s) 287
FauNDI CATATG 1 cut(s) 936
FbaI TGATCA 2 cut(s) 628, 1000
Fnu4HI GCNGC 5 cut(s) 42, 387, 783, 786, 789
FokI GGATG 2 cut(s) 89, 359
Fsp4HI GCNGC 5 cut(s) 42, 387, 783, 786, 789
GlaI GCGC 1 cut(s) 752
GluI GCNGC 5 cut(s) 42, 387, 783, 786, 789
HaeII RGCGCY 1 cut(s) 754
HaeIII GGCC 2 cut(s) 477, 601
HapII CCGG 3 cut(s) 407, 522, 988
HhaI GCGC 1 cut(s) 753
Hin1II CATG 1 cut(s) 291
Hin6I GCGC 1 cut(s) 751
HinP1I GCGC 1 cut(s) 751
HinfI GANTC 6 cut(s) 85, 140, 299, 431, 492, 580
HpaII CCGG 3 cut(s) 407, 522, 988
HphI GGTGA 2 cut(s) 557, 824
Hpy166II GTNNAC 2 cut(s) 216, 224
Hpy188I TCNGA 7 cut(s) 33, 105, 145, 193, 579, 594, 847
Hpy188III TCNNGA 2 cut(s) 435, 481
Hpy8I GTNNAC 2 cut(s) 216, 224
Hpy99I CGWCG 1 cut(s) 996
HpyAV CCTTC 2 cut(s) 62, 809
HpyCH4III ACNGT 4 cut(s) 135, 209, 694, 866
HpyCH4IV ACGT 1 cut(s) 451
HpyCH4V TGCA 9 cut(s) 80, 170, 413, 641, 677, 766, 785, 842, 964
HpyF10VI GCNNNNNNNGC 2 cut(s) 386, 788
HpyF3I CTNAG 3 cut(s) 32, 591, 717
HpySE526I ACGT 1 cut(s) 451
Hsp92II CATG 1 cut(s) 291
HspAI GCGC 1 cut(s) 751
KpnI GGTACC 1 cut(s) 573
KroI GCCGGC 1 cut(s) 987
KroNI GCCGGC 1 cut(s) 989
Ksp22I TGATCA 2 cut(s) 628, 1000
Kzo9I GATC 4 cut(s) 440, 628, 797, 1000
LmnI GCTCC 4 cut(s) 38, 63, 377, 962
Lsp1109I GCAGC 5 cut(s) 28, 373, 769, 775, 797
LweI GCATC 7 cut(s) 67, 268, 300, 474, 686, 851, 861
MaeII ACGT 1 cut(s) 451
MalI GATC 4 cut(s) 442, 630, 799, 1002
MboI GATC 4 cut(s) 440, 628, 797, 1000
MboII GAAGA 2 cut(s) 440, 818
MflI RGATCY 1 cut(s) 797
MhlI GDGCHC 1 cut(s) 382
MluCI AATT 5 cut(s) 122, 146, 501, 761, 996
MlyI GAGTC 2 cut(s) 440, 501
MmeI TCCRAC 2 cut(s) 117, 542
MnlI CCTC 9 cut(s) 221, 235, 412, 455, 488, 501, 541, 600, 990
Mph1103I ATGCAT 1 cut(s) 679
MroNI GCCGGC 1 cut(s) 987
MseI TTAA 4 cut(s) 90, 108, 116, 1027
MslI CAYNNNNRTG 1 cut(s) 276
MspA1I CMGCKG 2 cut(s) 788, 975
MspI CCGG 3 cut(s) 407, 522, 988
MspR9I CCNGG 1 cut(s) 337
Mva1269I GAATGC 1 cut(s) 721
MvaI CCWGG 1 cut(s) 337
MwoI GCNNNNNNNGC 2 cut(s) 386, 788
NaeI GCCGGC 1 cut(s) 989
NdeI CATATG 1 cut(s) 936
NdeII GATC 4 cut(s) 440, 628, 797, 1000
NgoMIV GCCGGC 1 cut(s) 987
NlaIII CATG 1 cut(s) 291
NlaIV GGNNCC 1 cut(s) 571
NsiI ATGCAT 1 cut(s) 679
PceI AGGCCT 1 cut(s) 477
PcsI WCGNNNNNNNCGW 1 cut(s) 583
PctI GAATGC 1 cut(s) 721
PdiI GCCGGC 1 cut(s) 989
PfeI GAWTC 4 cut(s) 85, 140, 299, 580
Pfl23II CGTACG 1 cut(s) 448
PinAI ACCGGT 1 cut(s) 521
PkrI GCNGC 5 cut(s) 43, 388, 784, 787, 790
PleI GAGTC 2 cut(s) 439, 500
PpsI GAGTC 2 cut(s) 439, 500
Ppu21I YACGTR 1 cut(s) 452
PshBI ATTAAT 1 cut(s) 108
PsiI TTATAA 1 cut(s) 909
Psp6I CCWGG 1 cut(s) 335
PspGI CCWGG 1 cut(s) 335
PspLI CGTACG 1 cut(s) 448
PspN4I GGNNCC 1 cut(s) 571
PspPI GGNCC 1 cut(s) 599
PstI CTGCAG 1 cut(s) 787
PsuI RGATCY 1 cut(s) 797
PvuII CAGCTG 2 cut(s) 788, 975
RsaI GTAC 7 cut(s) 341, 450, 513, 526, 571, 668, 949
RsaNI GTAC 7 cut(s) 340, 449, 512, 525, 570, 667, 948
RseI CAYNNNNRTG 1 cut(s) 276
SaqAI TTAA 4 cut(s) 90, 108, 116, 1027
SatI GCNGC 5 cut(s) 42, 387, 783, 786, 789
Sau3AI GATC 4 cut(s) 440, 628, 797, 1000
Sau96I GGNCC 1 cut(s) 599
SchI GAGTC 2 cut(s) 440, 501
ScrFI CCNGG 1 cut(s) 337
SduI GDGCHC 1 cut(s) 382
SfaNI GCATC 7 cut(s) 67, 268, 300, 474, 686, 851, 861
SfcI CTRYAG 1 cut(s) 783
SmiMI CAYNNNNRTG 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 479
SmoI CTYRAG 1 cut(s) 479
Sse9I AATT 5 cut(s) 122, 146, 501, 761, 996
SseBI AGGCCT 1 cut(s) 477
SsiI CCGC 3 cut(s) 96, 914, 1021
StuI AGGCCT 1 cut(s) 477
StyD4I CCNGG 1 cut(s) 335
StyI CCWWGG 3 cut(s) 8, 472, 646
TaaI ACNGT 4 cut(s) 135, 209, 694, 866
TaiI ACGT 1 cut(s) 454
TasI AATT 5 cut(s) 122, 146, 501, 761, 996
TatI WGTACW 1 cut(s) 947
TfiI GAWTC 4 cut(s) 85, 140, 299, 580
Tru1I TTAA 4 cut(s) 90, 108, 116, 1027
Tru9I TTAA 4 cut(s) 90, 108, 116, 1027
TscAI CASTG 3 cut(s) 73, 165, 223
TseI GCWGC 5 cut(s) 41, 386, 782, 785, 788
TspRI CASTG 3 cut(s) 73, 165, 223
VspI ATTAAT 1 cut(s) 108
XagI CCTNNNNNAGG 2 cut(s) 594, 899
XapI RAATTY 1 cut(s) 146
Zsp2I ATGCAT 1 cut(s) 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.