Prupe.8G246900_v2.0.a1

Mitochondrial ubiquitin ligase activator of NFKB

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
21386250 .. 21389212
2963 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G246900.1

Sequence Viewer

Length: 1023 bp
ATGCTGCCTTGGGGTGGATTAAGTTGTTGTTTGAGTGCAGCTGCTCTTTACCTTCTTGGCAGGAGCAGTGGCAGGGATGCAGATATTCTTAAATCGGCCACTCGGATTAATCAGTTGAAGGAATTGGCAAAATTGTTGGATTCCGAGTGCATATTACCATTGGTGGTTGCAATTTCGGGGAGAGTTAGCTCTGAAACCCCCATCACCTGTGAGTTCACTGGTTTACGAGGTGTAGTTGTGGAGGAAACGGCAGAACAACATTTTTTGAAACACAATGATGCTGGTTCATGGATACAGGATTCTGCTTTGATGCTTTCAATGAGTAAAGAAGTCCCCTGGTACTTGGATGATGGAACCGGTCGTGTGCATGTGGTGGGAGCTCGAGGCGCCACAGGCTTTGTATTGCCGGTCGCAAGTGAGGTATTTGAAGAGTCAGGGCGGTCCCTCGTACGTGGGACATTAGATTATCTTCAGGGCCTCAAGATGCTTGGTGTCAAACGAATTGAGAGAGTACTTCCAACAGGCACGTCTTTGAGTGTTGTTGGTGAGGCTGTCAAAGATGACATTGGTACCATCCGGATTCAACGACCTCACAAAGGGCCATTTTATGTCTCTCCCAAAACCATTGATCAGCTTATTGCAAACCTTGGGAAATGGGCAAGGTGGTACAAATATGCATCTTTGGGTTTGACCGTGTTTGGTGTTTATTTGGTTGCTAAGCATTCTGTCCAATACATCTTGGAAAGAAGGCGCCGTTGGGAATTGCAGAGAAGGGTTCTTGCTGCAGCTGCTAAAAGATCTGGGGAAGATAATGAAGGTTCGAACGAAAAAGATGATAATGTGTTAGATGGAAGCAAGAGGCTGATGCCAGATTTATGTGTGATATGCCTTGAGCACGAGTATAATGCGGTTTTTGTGCCGTGTGGTCATATGTGCTGTTGTACAACATGCTCCTTGCACCTGACCAATTGTCCTCTCTGCCGACGAAGAATTGATCAGGCAGTGAAGACTTTCCGCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

341

Amino Acids

37.66

Weight (kDa)

8.64

Isoelectric Point (pI)

53.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011309)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 569
AccB1I GGYRCC 3 cut(s) 386, 569, 750
AccIII TCCGGA 1 cut(s) 576
AciI CCGC 3 cut(s) 439, 908, 1015
AcoI YGGCCR 1 cut(s) 96
AcuI CTGAAG 1 cut(s) 455
AcyI GRCGYC 2 cut(s) 387, 751
AfaI GTAC 6 cut(s) 341, 450, 513, 571, 668, 943
AfiI CCNNNNNNNGG 2 cut(s) 14, 596
AgeI ACCGGT 1 cut(s) 356
AgsI TTSAA 5 cut(s) 118, 268, 318, 428, 584
AhdI GACNNNNNGTC 1 cut(s) 969
AjiI CACGTC 1 cut(s) 528
AjnI CCWGG 1 cut(s) 335
AjuI GAANNNNNNNTTGG 2 cut(s) 739, 771
AluBI AGCT 5 cut(s) 41, 189, 380, 634, 788
AluI AGCT 5 cut(s) 41, 189, 380, 634, 788
Alw21I GWGCWC 2 cut(s) 382, 897
Alw26I GTCTC 1 cut(s) 616
Ama87I CYCGRG 1 cut(s) 381
Aor13HI TCCGGA 1 cut(s) 576
AoxI GGCC 3 cut(s) 96, 475, 599
ApeKI GCWGC 6 cut(s) 4, 38, 41, 782, 785, 788
AseI ATTAAT 1 cut(s) 108
AsiGI ACCGGT 1 cut(s) 356
Asp700I GAANNNNTTC 1 cut(s) 1010
Asp718I GGTACC 1 cut(s) 569
AspLEI GCGC 2 cut(s) 389, 753
AspS9I GGNCC 3 cut(s) 441, 475, 599
AsuHPI GGTGA 2 cut(s) 196, 557
AsuII TTCGAA 1 cut(s) 821
AvaI CYCGRG 1 cut(s) 381
AvaII GGWCC 1 cut(s) 441
BaeI ACNNNNGTAYC 2 cut(s) 553, 586
BanI GGYRCC 3 cut(s) 386, 569, 750
BanII GRGCYC 1 cut(s) 382
BauI CACGAG 1 cut(s) 896
BbsI GAAGAC 1 cut(s) 1013
Bbv12I GWGCWC 2 cut(s) 382, 897
BbvI GCAGC 5 cut(s) 28, 50, 769, 775, 797
BccI CCATC 4 cut(s) 209, 344, 581, 842
BceAI ACGGC 3 cut(s) 264, 738, 904
BcgI CGANNNNNNTGC 2 cut(s) 887, 921
BciT130I CCWGG 1 cut(s) 337
BciVI GTATCC 1 cut(s) 285
BclI TGATCA 2 cut(s) 628, 994
BcoDI GTCTC 1 cut(s) 616
BfmI CTRYAG 1 cut(s) 783
BfoI RGCGCY 2 cut(s) 390, 754
BfuI GTATCC 1 cut(s) 285
BglII AGATCT 1 cut(s) 797
BisI GCNGC 6 cut(s) 5, 39, 42, 783, 786, 789
BlpI GCTNAGC 1 cut(s) 717
BlsI GCNGC 6 cut(s) 6, 40, 43, 784, 787, 790
BmcAI AGTACT 1 cut(s) 513
Bme1390I CCNGG 1 cut(s) 337
Bme18I GGWCC 1 cut(s) 441
BmeRI GACNNNNNGTC 1 cut(s) 969
BmeT110I CYCGRG 1 cut(s) 381
BmgBI CACGTC 1 cut(s) 528
BmgT120I GGNCC 3 cut(s) 441, 475, 599
BmiI GGNNCC 5 cut(s) 355, 388, 443, 571, 752
BmrFI CCNGG 1 cut(s) 337
BmsI GCATC 6 cut(s) 67, 268, 300, 474, 686, 855
BpiI GAAGAC 1 cut(s) 1013
Bpu1102I GCTNAGC 1 cut(s) 717
Bpu14I TTCGAA 1 cut(s) 821
BpuEI CTTGAG 2 cut(s) 464, 911
BsaAI YACGTR 1 cut(s) 452
BsaHI GRCGYC 2 cut(s) 387, 751
BsaJI CCNNGG 3 cut(s) 8, 335, 646
BsaWI WCCGGW 2 cut(s) 356, 576
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 596
Bse118I RCCGGY 2 cut(s) 356, 406
Bse1I ACTGG 1 cut(s) 223
BseAI TCCGGA 1 cut(s) 576
BseBI CCWGG 1 cut(s) 337
BseDI CCNNGG 3 cut(s) 8, 335, 646
BseGI GGATG 3 cut(s) 82, 352, 573
BseLI CCNNNNNNNGG 2 cut(s) 14, 596
BseNI ACTGG 1 cut(s) 223
BseXI GCAGC 5 cut(s) 28, 50, 769, 775, 797
BsgI GTGCAG 1 cut(s) 57
Bsh1285I CGRYCG 2 cut(s) 361, 411
BshFI GGCC 3 cut(s) 98, 477, 601
BshNI GGYRCC 3 cut(s) 386, 569, 750
BshTI ACCGGT 1 cut(s) 356
BsiEI CGRYCG 2 cut(s) 361, 411
BsiHKAI GWGCWC 2 cut(s) 382, 897
BsiHKCI CYCGRG 1 cut(s) 381
BsiSI CCGG 3 cut(s) 357, 407, 577
BsiWI CGTACG 1 cut(s) 448
BslFI GGGAC 3 cut(s) 317, 427, 469
BslI CCNNNNNNNGG 2 cut(s) 14, 596
BsmAI GTCTC 1 cut(s) 616
BsmFI GGGAC 3 cut(s) 317, 427, 469
BsmI GAATGC 1 cut(s) 721
BsnI GGCC 3 cut(s) 98, 477, 601
BsoBI CYCGRG 1 cut(s) 381
Bsp119I TTCGAA 1 cut(s) 821
Bsp1286I GDGCHC 2 cut(s) 382, 897
Bsp13I TCCGGA 1 cut(s) 576
Bsp1407I TGTACA 1 cut(s) 941
Bsp143I GATC 3 cut(s) 628, 797, 994
Bsp1720I GCTNAGC 1 cut(s) 717
BspACI CCGC 3 cut(s) 439, 908, 1015
BspANI GGCC 3 cut(s) 98, 477, 601
BspEI TCCGGA 1 cut(s) 576
BspLI GGNNCC 5 cut(s) 355, 388, 443, 571, 752
BspMAI CTGCAG 1 cut(s) 787
BspT104I TTCGAA 1 cut(s) 821
BspT107I GGYRCC 3 cut(s) 386, 569, 750
BsrFI RCCGGY 2 cut(s) 356, 406
BsrGI TGTACA 1 cut(s) 941
BsrI ACTGG 1 cut(s) 223
BssAI RCCGGY 2 cut(s) 356, 406
BssECI CCNNGG 3 cut(s) 8, 335, 646
BssMI GATC 3 cut(s) 628, 797, 994
BssNI GRCGYC 2 cut(s) 387, 751
BssSI CACGAG 1 cut(s) 896
BssT1I CCWWGG 2 cut(s) 8, 646
Bst2BI CACGAG 1 cut(s) 896
Bst2UI CCWGG 1 cut(s) 337
Bst4CI ACNGT 1 cut(s) 694
Bst6I CTCTTC 1 cut(s) 423
BstACI GRCGYC 2 cut(s) 387, 751
BstAUI TGTACA 1 cut(s) 941
BstBAI YACGTR 1 cut(s) 452
BstBI TTCGAA 1 cut(s) 821
BstDEI CTNAG 1 cut(s) 717
BstENI CCTNNNNNAGG 1 cut(s) 594
BstF5I GGATG 3 cut(s) 82, 352, 573
BstH2I RGCGCY 2 cut(s) 390, 754
BstHHI GCGC 2 cut(s) 389, 753
BstKTI GATC 3 cut(s) 631, 800, 997
BstMAI GTCTC 1 cut(s) 616
BstMBI GATC 3 cut(s) 628, 797, 994
BstMCI CGRYCG 2 cut(s) 361, 411
BstMWI GCNNNNNNNGC 3 cut(s) 386, 393, 788
BstNI CCWGG 1 cut(s) 337
BstNSI RCATGY 2 cut(s) 371, 951
BstSCI CCNGG 1 cut(s) 335
BstSFI CTRYAG 1 cut(s) 783
BstV1I GCAGC 5 cut(s) 28, 50, 769, 775, 797
BstV2I GAAGAC 1 cut(s) 1013
BstX2I RGATCY 1 cut(s) 797
BstYI RGATCY 1 cut(s) 797
BsuI GTATCC 1 cut(s) 285
BsuRI GGCC 3 cut(s) 98, 477, 601
BtrI CACGTC 1 cut(s) 528
BtsCI GGATG 3 cut(s) 82, 352, 573
BtsI GCAGTG 2 cut(s) 73, 1008
BtsIMutI CAGTG 3 cut(s) 73, 216, 1008
CfoI GCGC 2 cut(s) 389, 753
Cfr10I RCCGGY 2 cut(s) 356, 406
Cfr13I GGNCC 3 cut(s) 441, 475, 599
Csp6I GTAC 6 cut(s) 340, 449, 512, 570, 667, 942
CspAI ACCGGT 1 cut(s) 356
CspCI CAANNNNNGTGG 2 cut(s) 379, 414
CviAII CATG 3 cut(s) 288, 368, 948
CviQI GTAC 6 cut(s) 340, 449, 512, 570, 667, 942
DdeI CTNAG 1 cut(s) 717
DinI GGCGCC 2 cut(s) 388, 752
DpnI GATC 3 cut(s) 630, 799, 996
DpnII GATC 3 cut(s) 628, 797, 994
DriI GACNNNNNGTC 1 cut(s) 969
EaeI YGGCCR 1 cut(s) 96
Eam1104I CTCTTC 1 cut(s) 423
Eam1105I GACNNNNNGTC 1 cut(s) 969
EarI CTCTTC 1 cut(s) 423
EciI GGCGGA 1 cut(s) 1004
Ecl136II GAGCTC 1 cut(s) 380
Eco130I CCWWGG 2 cut(s) 8, 646
Eco24I GRGCYC 1 cut(s) 382
Eco47I GGWCC 1 cut(s) 441
Eco53kI GAGCTC 1 cut(s) 380
Eco57I CTGAAG 1 cut(s) 455
Eco88I CYCGRG 1 cut(s) 381
EcoICRI GAGCTC 1 cut(s) 380
EcoNI CCTNNNNNAGG 1 cut(s) 594
EcoO109I RGGNCCY 1 cut(s) 475
EcoRII CCWGG 1 cut(s) 335
EcoT14I CCWWGG 2 cut(s) 8, 646
EcoT22I ATGCAT 1 cut(s) 679
EcoT38I GRGCYC 1 cut(s) 382
EgeI GGCGCC 2 cut(s) 388, 752
EheI GGCGCC 2 cut(s) 388, 752
ErhI CCWWGG 2 cut(s) 8, 646
FaeI CATG 3 cut(s) 291, 371, 951
FaqI GGGAC 3 cut(s) 317, 427, 469
FatI CATG 3 cut(s) 287, 367, 947
FauNDI CATATG 1 cut(s) 930
FbaI TGATCA 2 cut(s) 628, 994
Fnu4HI GCNGC 6 cut(s) 5, 39, 42, 783, 786, 789
FokI GGATG 3 cut(s) 89, 359, 560
FriOI GRGCYC 1 cut(s) 382
Fsp4HI GCNGC 6 cut(s) 5, 39, 42, 783, 786, 789
GlaI GCGC 2 cut(s) 388, 752
GluI GCNGC 6 cut(s) 5, 39, 42, 783, 786, 789
HaeII RGCGCY 2 cut(s) 390, 754
HaeIII GGCC 3 cut(s) 98, 477, 601
HapII CCGG 3 cut(s) 357, 407, 577
HhaI GCGC 2 cut(s) 389, 753
Hin1I GRCGYC 2 cut(s) 387, 751
Hin1II CATG 3 cut(s) 291, 371, 951
Hin6I GCGC 2 cut(s) 387, 751
HinP1I GCGC 2 cut(s) 387, 751
HinfI GANTC 4 cut(s) 140, 299, 431, 580
HpaII CCGG 3 cut(s) 357, 407, 577
HphI GGTGA 2 cut(s) 196, 557
Hpy166II GTNNAC 2 cut(s) 216, 224
Hpy188I TCNGA 3 cut(s) 105, 145, 193
Hpy188III TCNNGA 2 cut(s) 481, 577
Hpy8I GTNNAC 2 cut(s) 216, 224
Hpy99I CGWCG 1 cut(s) 987
HpyAV CCTTC 5 cut(s) 62, 112, 741, 765, 809
HpyCH4III ACNGT 1 cut(s) 694
HpyCH4IV ACGT 2 cut(s) 451, 527
HpyF10VI GCNNNNNNNGC 3 cut(s) 386, 393, 788
HpyF3I CTNAG 1 cut(s) 717
HpySE526I ACGT 2 cut(s) 451, 527
Hsp92I GRCGYC 2 cut(s) 387, 751
Hsp92II CATG 3 cut(s) 291, 371, 951
HspAI GCGC 2 cut(s) 387, 751
KasI GGCGCC 2 cut(s) 386, 750
Kpn2I TCCGGA 1 cut(s) 576
KpnI GGTACC 1 cut(s) 573
Ksp22I TGATCA 2 cut(s) 628, 994
Kzo9I GATC 3 cut(s) 628, 797, 994
LmnI GCTCC 3 cut(s) 63, 377, 956
Lsp1109I GCAGC 5 cut(s) 28, 50, 769, 775, 797
LweI GCATC 6 cut(s) 67, 268, 300, 474, 686, 855
MaeII ACGT 2 cut(s) 451, 527
MalI GATC 3 cut(s) 630, 799, 996
MboI GATC 3 cut(s) 628, 797, 994
MboII GAAGA 5 cut(s) 440, 461, 818, 999, 1018
MfeI CAATTG 1 cut(s) 967
MflI RGATCY 1 cut(s) 797
MhlI GDGCHC 2 cut(s) 382, 897
MluCI AATT 7 cut(s) 122, 131, 171, 501, 761, 967, 990
Mly113I GGCGCC 2 cut(s) 387, 751
MlyI GAGTC 1 cut(s) 440
MmeI TCCRAC 2 cut(s) 117, 542
Mph1103I ATGCAT 1 cut(s) 679
MroI TCCGGA 1 cut(s) 576
MroXI GAANNNNTTC 1 cut(s) 1010
MseI TTAA 3 cut(s) 20, 90, 108
MslI CAYNNNNRTG 1 cut(s) 276
MspA1I CMGCKG 2 cut(s) 41, 788
MspI CCGG 3 cut(s) 357, 407, 577
MspR9I CCNGG 1 cut(s) 337
MunI CAATTG 1 cut(s) 967
Mva1269I GAATGC 1 cut(s) 721
MvaI CCWGG 1 cut(s) 337
MwoI GCNNNNNNNGC 3 cut(s) 386, 393, 788
NarI GGCGCC 2 cut(s) 387, 751
NdeI CATATG 1 cut(s) 930
NdeII GATC 3 cut(s) 628, 797, 994
NlaIII CATG 3 cut(s) 291, 371, 951
NlaIV GGNNCC 5 cut(s) 355, 388, 443, 571, 752
NsiI ATGCAT 1 cut(s) 679
NspI RCATGY 2 cut(s) 371, 951
NspV TTCGAA 1 cut(s) 821
PaeR7I CTCGAG 1 cut(s) 381
PctI GAATGC 1 cut(s) 721
PdmI GAANNNNTTC 1 cut(s) 1010
PfeI GAWTC 3 cut(s) 140, 299, 580
Pfl23II CGTACG 1 cut(s) 448
PinAI ACCGGT 1 cut(s) 356
PkrI GCNGC 6 cut(s) 6, 40, 43, 784, 787, 790
PleI GAGTC 1 cut(s) 439
PluTI GGCGCC 2 cut(s) 390, 754
PpsI GAGTC 1 cut(s) 439
Ppu21I YACGTR 1 cut(s) 452
PshBI ATTAAT 1 cut(s) 108
Psp124BI GAGCTC 1 cut(s) 382
Psp6I CCWGG 1 cut(s) 335
PspGI CCWGG 1 cut(s) 335
PspLI CGTACG 1 cut(s) 448
PspN4I GGNNCC 5 cut(s) 355, 388, 443, 571, 752
PspPI GGNCC 3 cut(s) 441, 475, 599
PspXI VCTCGAGB 1 cut(s) 381
PstI CTGCAG 1 cut(s) 787
PsuI RGATCY 1 cut(s) 797
PvuII CAGCTG 2 cut(s) 41, 788
RsaI GTAC 6 cut(s) 341, 450, 513, 571, 668, 943
RsaNI GTAC 6 cut(s) 340, 449, 512, 570, 667, 942
RseI CAYNNNNRTG 1 cut(s) 276
SacI GAGCTC 1 cut(s) 382
SaqAI TTAA 3 cut(s) 20, 90, 108
SatI GCNGC 6 cut(s) 5, 39, 42, 783, 786, 789
Sau3AI GATC 3 cut(s) 628, 797, 994
Sau96I GGNCC 3 cut(s) 441, 475, 599
ScaI AGTACT 1 cut(s) 513
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 1 cut(s) 337
SduI GDGCHC 2 cut(s) 382, 897
SfaNI GCATC 6 cut(s) 67, 268, 300, 474, 686, 855
SfcI CTRYAG 1 cut(s) 783
SfoI GGCGCC 2 cut(s) 388, 752
Sfr274I CTCGAG 1 cut(s) 381
SfuI TTCGAA 1 cut(s) 821
SinI GGWCC 1 cut(s) 441
SlaI CTCGAG 1 cut(s) 381
SmiMI CAYNNNNRTG 1 cut(s) 276
SmlI CTYRAG 3 cut(s) 381, 479, 890
SmoI CTYRAG 3 cut(s) 381, 479, 890
Sse9I AATT 7 cut(s) 122, 131, 171, 501, 761, 967, 990
SsiI CCGC 3 cut(s) 439, 908, 1015
SspDI GGCGCC 2 cut(s) 386, 750
SstI GAGCTC 1 cut(s) 382
StyD4I CCNGG 1 cut(s) 335
StyI CCWWGG 2 cut(s) 8, 646
TaaI ACNGT 1 cut(s) 694
TaiI ACGT 2 cut(s) 454, 530
TaqI TCGA 2 cut(s) 382, 821
TasI AATT 7 cut(s) 122, 131, 171, 501, 761, 967, 990
TatI WGTACW 2 cut(s) 511, 941
TfiI GAWTC 3 cut(s) 140, 299, 580
Tru1I TTAA 3 cut(s) 20, 90, 108
Tru9I TTAA 3 cut(s) 20, 90, 108
TscAI CASTG 3 cut(s) 73, 223, 1008
TseI GCWGC 6 cut(s) 4, 38, 41, 782, 785, 788
TspDTI ATGAA 2 cut(s) 276, 828
TspRI CASTG 3 cut(s) 73, 223, 1008
VpaK11BI GGWCC 1 cut(s) 441
VspI ATTAAT 1 cut(s) 108
XagI CCTNNNNNAGG 1 cut(s) 594
XceI RCATGY 2 cut(s) 371, 951
XhoI CTCGAG 1 cut(s) 381
XmnI GAANNNNTTC 1 cut(s) 1010
ZrmI AGTACT 1 cut(s) 513
Zsp2I ATGCAT 1 cut(s) 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.