AT1G63980

glycine rich nucleic binding domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
23740493 .. 23743302
2810 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G63980.2

Sequence Viewer

Length: 1176 bp
ATGGCGGCGCCGGAAGCTCCGGTTAAGTACGTCGGAATATGTAAGGATTCCGCCGCTTTCAAGCTTATGAAATCGATGGGTTGGGAAGAAGGAGAAGGACTTGGTAAAGATAAGCAAGGTATCAAAGGTTATGTGAGAGTTACGAACAAACAAGATACATCTGGTGTTGGTCTTGATAAGCCAAATCCATGGGCATTTGATACAACTCAGTTCGATAACATTCTCAAGAAATTGAAAGTGCAAGCTGCTCCTACCAAGACTAGCAAGAATGATGATGATTCAGATAAGGAAGATGAAAGTGAAGATGATGCTGTCAAATCTGAGCCTGCCAAGTTGAAGACCGTTGCTAAAGTCACTCGTCCACAAGGAAGGTATAAACGTAGAGAGAAAGGGAAGCTTGTCAATTCATACTCGTCTAAAGATCTTGAAGGAATACTGGTTAAGCGAACTGAGGATCCTTCTCCTGCAGTTTGTGACATAGCCGATTCTATGGATATTGAAATTATATCTGAGGACCAAGATGCTAGTATTAAAGAACAGAAAATTGAAGAACCTTCTTCGAACTGGTGGGGATTTAAATCCGGGTTTGTCTCGGGTGGTCTTCTGGGGGCCAAGTCGGGCAAAAAGAAATTAAAAGCTAGCGAGAGAAAAATGTTTAGTGAGAATGATCAAGAGAATCTTTACAACATGGTTCAGGATAAAGCCACAGCGGGAAAACAAGGACTGGGTATCAAAGACCGGCCAAAGAAAATAGCTGGTGTTCGTTACGAAGGGAAGAAAACCTCTTTTGATAACAGTGATGATGATGATGATGATGATGATGATGATGACGAAGAAGACGAAGAGGAAGATGAAGACGAGAGTGAAGCAGATGATGATGACAAGGACTCTGTAATTGAAAGTTCTCTTCCCGCGAAAAGGAAGCACGATGAAATCATTGAACCCAAAATCAAGTTAAAGAACCTGTGCAAGCAGATTGTTAAAAAGGATGCTGGTAAAGGTGGATTCATGAAGCTGAAACAGCTAAAATCTCTGATCGATGAACAAGCACCATCAGTTCTTTCAGAGTTTTCTTCAAGAAAAGATGCTATTGCTTACTTGAAACTTAAGCTGGAGCGAAGTGGCAAGTTTGTTGTGGAGGGAAAGAAGATTAGTCTTGTATCAAGCAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000723 GO:0000775 GO:0000776 GO:0000781 GO:0000784 GO:0000819 GO:0003674 GO:0003676 GO:0003723 GO:0004857 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005819 GO:0005856 GO:0006139 GO:0006259 GO:0006278 GO:0006725 GO:0006807 GO:0006996 GO:0007004 GO:0007049 GO:0007059 GO:0007080 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010389 GO:0010521 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010639 GO:0010833 GO:0010948 GO:0010972 GO:0015630 GO:0016043 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022402 GO:0030234 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0031647 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0032268 GO:0032269 GO:0032879 GO:0032880 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033365 GO:0034502 GO:0034504 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0042592 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043388 GO:0044092 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0045786 GO:0045930 GO:0045934 GO:0046483 GO:0048285 GO:0048518 GO:0048519 GO:0048523 GO:0050000 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051053 GO:0051098 GO:0051099 GO:0051101 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051246 GO:0051248 GO:0051276 GO:0051303 GO:0051310 GO:0051338 GO:0051348 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051726 GO:0051972 GO:0051974 GO:0060249 GO:0060255 GO:0060341 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070034 GO:0070198 GO:0070727 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:0098687 GO:0098772 GO:0098813 GO:0140014 GO:1900180 GO:1900182 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902570 GO:1902749 GO:1902750 GO:1903047 GO:1903320 GO:1903321 GO:1903827 GO:1903829 GO:1904356 GO:1904357 GO:1904742 GO:1904744 GO:1904749 GO:1904751 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

391

Amino Acids

43.44

Weight (kDa)

5.21

Isoelectric Point (pI)

43.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch PF01585 16 - 58 2.1e-15 G-patch domain
WHD_LYAR PF25879 312 - 387 7.9e-16 LYAR family winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011435)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 7
AccII CGCG 1 cut(s) 914
AciI CCGC 5 cut(s) 5, 51, 54, 710, 912
AclWI GGATC 2 cut(s) 449, 462
AcoI YGGCCR 1 cut(s) 740
AcyI GRCGYC 1 cut(s) 8
AfaI GTAC 1 cut(s) 29
AfiI CCNNNNNNNGG 1 cut(s) 918
AflII CTTAAG 1 cut(s) 1106
AloI GAACNNNNNNTCC 2 cut(s) 439, 471
AluBI AGCT 9 cut(s) 17, 64, 245, 397, 638, 755, 1015, 1024, 1111
AluI AGCT 9 cut(s) 17, 64, 245, 397, 638, 755, 1015, 1024, 1111
Alw26I GTCTC 1 cut(s) 595
AlwI GGATC 2 cut(s) 449, 462
Ama87I CYCGRG 1 cut(s) 592
AoxI GGCC 2 cut(s) 609, 740
ApeKI GCWGC 1 cut(s) 245
AspLEI GCGC 1 cut(s) 10
AspS9I GGNCC 2 cut(s) 514, 609
AsuC2I CCSGG 1 cut(s) 583
AsuII TTCGAA 1 cut(s) 560
AsuNHI GCTAGC 1 cut(s) 638
AvaI CYCGRG 1 cut(s) 592
AvaII GGWCC 1 cut(s) 514
BamHI GGATCC 1 cut(s) 454
BanI GGYRCC 1 cut(s) 7
BbsI GAAGAC 4 cut(s) 344, 593, 843, 861
BbvI GCAGC 1 cut(s) 232
BccI CCATC 2 cut(s) 70, 1060
BclI TGATCA 1 cut(s) 667
BcnI CCSGG 1 cut(s) 583
BcoDI GTCTC 1 cut(s) 595
BfaI CTAG 3 cut(s) 261, 525, 639
BfmI CTRYAG 1 cut(s) 465
BfoI RGCGCY 1 cut(s) 11
BfrI CTTAAG 1 cut(s) 1106
BglII AGATCT 1 cut(s) 421
BisI GCNGC 3 cut(s) 6, 54, 246
BlsI GCNGC 3 cut(s) 7, 55, 247
Bme1390I CCNGG 1 cut(s) 583
Bme18I GGWCC 1 cut(s) 514
BmeT110I CYCGRG 1 cut(s) 592
BmgT120I GGNCC 2 cut(s) 514, 609
BmiI GGNNCC 3 cut(s) 9, 456, 610
BmrFI CCNGG 1 cut(s) 583
BmrI ACTGGG 1 cut(s) 734
BmsI GCATC 4 cut(s) 298, 511, 979, 1075
BmtI GCTAGC 1 cut(s) 642
BmuI ACTGGG 1 cut(s) 734
BpiI GAAGAC 4 cut(s) 344, 593, 843, 861
BpmI CTGGAG 1 cut(s) 1133
Bpu14I TTCGAA 1 cut(s) 560
BpuEI CTTGAG 1 cut(s) 209
BpuMI CCSGG 1 cut(s) 583
Bsa29I ATCGAT 2 cut(s) 74, 1038
BsaBI GATNNNNATC 1 cut(s) 577
BsaHI GRCGYC 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 188
BsaWI WCCGGW 1 cut(s) 19
Bsc4I CCNNNNNNNGG 1 cut(s) 918
Bse118I RCCGGY 1 cut(s) 738
Bse1I ACTGG 3 cut(s) 441, 569, 729
Bse8I GATNNNNATC 1 cut(s) 577
BseCI ATCGAT 2 cut(s) 74, 1038
BseDI CCNNGG 1 cut(s) 188
BseGI GGATG 1 cut(s) 994
BseJI GATNNNNATC 1 cut(s) 577
BseLI CCNNNNNNNGG 1 cut(s) 918
BseMII CTCAG 4 cut(s) 221, 312, 441, 501
BseNI ACTGG 3 cut(s) 441, 569, 729
BseXI GCAGC 1 cut(s) 232
Bsh1236I CGCG 1 cut(s) 914
BshFI GGCC 2 cut(s) 611, 742
BshNI GGYRCC 1 cut(s) 7
BshVI ATCGAT 2 cut(s) 74, 1038
BsiHKCI CYCGRG 1 cut(s) 592
BsiSI CCGG 4 cut(s) 11, 20, 582, 739
BslI CCNNNNNNNGG 1 cut(s) 918
BsmAI GTCTC 1 cut(s) 595
BsnI GGCC 2 cut(s) 611, 742
BsoBI CYCGRG 1 cut(s) 592
Bsp119I TTCGAA 1 cut(s) 560
Bsp143I GATC 4 cut(s) 421, 454, 667, 1035
Bsp19I CCATGG 1 cut(s) 188
BspACI CCGC 5 cut(s) 5, 51, 54, 710, 912
BspANI GGCC 2 cut(s) 611, 742
BspCNI CTCAG 4 cut(s) 220, 313, 442, 502
BspDI ATCGAT 2 cut(s) 74, 1038
BspFNI CGCG 1 cut(s) 914
BspHI TCATGA 1 cut(s) 1008
BspLI GGNNCC 3 cut(s) 9, 456, 610
BspMAI CTGCAG 1 cut(s) 469
BspOI GCTAGC 1 cut(s) 642
BspPI GGATC 2 cut(s) 449, 462
BspT104I TTCGAA 1 cut(s) 560
BspT107I GGYRCC 1 cut(s) 7
BspTI CTTAAG 1 cut(s) 1106
BsrFI RCCGGY 1 cut(s) 738
BsrI ACTGG 3 cut(s) 441, 569, 729
BssAI RCCGGY 1 cut(s) 738
BssECI CCNNGG 1 cut(s) 188
BssMI GATC 4 cut(s) 421, 454, 667, 1035
BssNI GRCGYC 1 cut(s) 8
BssT1I CCWWGG 1 cut(s) 188
Bst4CI ACNGT 2 cut(s) 343, 797
Bst6I CTCTTC 2 cut(s) 837, 912
BstACI GRCGYC 1 cut(s) 8
BstAFI CTTAAG 1 cut(s) 1106
BstBI TTCGAA 1 cut(s) 560
BstC8I GCNNGC 4 cut(s) 243, 327, 640, 971
BstDEI CTNAG 4 cut(s) 207, 321, 450, 510
BstDSI CCRYGG 1 cut(s) 188
BstF5I GGATG 1 cut(s) 994
BstFNI CGCG 1 cut(s) 914
BstH2I RGCGCY 1 cut(s) 11
BstHHI GCGC 1 cut(s) 10
BstKTI GATC 4 cut(s) 424, 457, 670, 1038
BstMAI GTCTC 1 cut(s) 595
BstMBI GATC 4 cut(s) 421, 454, 667, 1035
BstMWI GCNNNNNNNGC 2 cut(s) 14, 1021
BstSCI CCNGG 1 cut(s) 581
BstSFI CTRYAG 1 cut(s) 465
BstUI CGCG 1 cut(s) 914
BstV1I GCAGC 1 cut(s) 232
BstV2I GAAGAC 4 cut(s) 344, 593, 843, 861
BstX2I RGATCY 2 cut(s) 421, 454
BstXI CCANNNNNNTGG 1 cut(s) 189
BstYI RGATCY 2 cut(s) 421, 454
Bsu15I ATCGAT 2 cut(s) 74, 1038
BsuRI GGCC 2 cut(s) 611, 742
BsuTUI ATCGAT 2 cut(s) 74, 1038
BtgI CCRYGG 1 cut(s) 188
BtsCI GGATG 1 cut(s) 994
BtsIMutI CAGTG 1 cut(s) 802
Cac8I GCNNGC 4 cut(s) 243, 327, 640, 971
CciI TCATGA 1 cut(s) 1008
CfoI GCGC 1 cut(s) 10
Cfr10I RCCGGY 1 cut(s) 738
Cfr13I GGNCC 2 cut(s) 514, 609
ClaI ATCGAT 2 cut(s) 74, 1038
Csp6I GTAC 1 cut(s) 28
CviAII CATG 3 cut(s) 189, 688, 1009
CviQI GTAC 1 cut(s) 28
DdeI CTNAG 4 cut(s) 207, 321, 450, 510
DinI GGCGCC 1 cut(s) 9
DpnI GATC 4 cut(s) 423, 456, 669, 1037
DpnII GATC 4 cut(s) 421, 454, 667, 1035
DraI TTTAAA 1 cut(s) 577
EaeI YGGCCR 1 cut(s) 740
Eam1104I CTCTTC 2 cut(s) 837, 912
EarI CTCTTC 2 cut(s) 837, 912
EciI GGCGGA 1 cut(s) 40
Eco130I CCWWGG 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 514
Eco88I CYCGRG 1 cut(s) 592
EcoT14I CCWWGG 1 cut(s) 188
EgeI GGCGCC 1 cut(s) 9
EheI GGCGCC 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 188
FaeI CATG 3 cut(s) 192, 691, 1012
FalI AAGNNNNNCTT 4 cut(s) 381, 413, 663, 695
FatI CATG 3 cut(s) 188, 687, 1008
FauI CCCGC 2 cut(s) 703, 919
FbaI TGATCA 1 cut(s) 667
Fnu4HI GCNGC 3 cut(s) 6, 54, 246
FokI GGATG 1 cut(s) 1001
Fsp4HI GCNGC 3 cut(s) 6, 54, 246
FspBI CTAG 3 cut(s) 261, 525, 639
GlaI GCGC 1 cut(s) 9
GluI GCNGC 3 cut(s) 6, 54, 246
GsuI CTGGAG 1 cut(s) 1133
HaeII RGCGCY 1 cut(s) 11
HaeIII GGCC 2 cut(s) 611, 742
HapII CCGG 4 cut(s) 11, 20, 582, 739
HhaI GCGC 1 cut(s) 10
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 3 cut(s) 192, 691, 1012
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HindIII AAGCTT 2 cut(s) 62, 395
HinfI GANTC 6 cut(s) 47, 278, 485, 676, 887, 1005
HpaII CCGG 4 cut(s) 11, 20, 582, 739
Hpy166II GTNNAC 1 cut(s) 362
Hpy188I TCNGA 6 cut(s) 35, 283, 322, 511, 1035, 1066
Hpy188III TCNNGA 7 cut(s) 173, 226, 425, 671, 695, 1009, 1077
Hpy8I GTNNAC 1 cut(s) 362
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 7 cut(s) 83, 89, 363, 422, 468, 564, 764
HpyCH4III ACNGT 2 cut(s) 343, 797
HpyCH4IV ACGT 2 cut(s) 30, 379
HpyCH4V TGCA 3 cut(s) 241, 467, 969
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 1021
HpyF3I CTNAG 4 cut(s) 207, 321, 450, 510
HpySE526I ACGT 2 cut(s) 30, 379
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 3 cut(s) 192, 691, 1012
HspAI GCGC 1 cut(s) 8
KasI GGCGCC 1 cut(s) 7
Ksp22I TGATCA 1 cut(s) 667
Kzo9I GATC 4 cut(s) 421, 454, 667, 1035
LmnI GCTCC 3 cut(s) 22, 253, 1114
Lsp1109I GCAGC 1 cut(s) 232
LweI GCATC 4 cut(s) 298, 511, 979, 1075
MaeI CTAG 3 cut(s) 261, 525, 639
MaeII ACGT 2 cut(s) 30, 379
MaeIII GTNAC 4 cut(s) 139, 352, 473, 764
MalI GATC 4 cut(s) 423, 456, 669, 1037
MboI GATC 4 cut(s) 421, 454, 667, 1035
MflI RGATCY 2 cut(s) 421, 454
MluCI AATT 6 cut(s) 230, 403, 501, 543, 629, 894
Mly113I GGCGCC 1 cut(s) 8
MlyI GAGTC 1 cut(s) 881
MmeI TCCRAC 1 cut(s) 13
MnlI CCTC 5 cut(s) 445, 505, 793, 838, 1132
MseI TTAA 8 cut(s) 24, 441, 531, 576, 632, 956, 981, 1107
MspA1I CMGCKG 1 cut(s) 710
MspCI CTTAAG 1 cut(s) 1106
MspI CCGG 4 cut(s) 11, 20, 582, 739
MspR9I CCNGG 1 cut(s) 583
MvnI CGCG 1 cut(s) 914
MwoI GCNNNNNNNGC 2 cut(s) 14, 1021
NarI GGCGCC 1 cut(s) 8
NciI CCSGG 1 cut(s) 583
NcoI CCATGG 1 cut(s) 188
NdeII GATC 4 cut(s) 421, 454, 667, 1035
NheI GCTAGC 1 cut(s) 638
NlaIII CATG 3 cut(s) 192, 691, 1012
NlaIV GGNNCC 3 cut(s) 9, 456, 610
NmuCI GTSAC 2 cut(s) 352, 473
NspV TTCGAA 1 cut(s) 560
PagI TCATGA 1 cut(s) 1008
PcsI WCGNNNNNNNCGW 1 cut(s) 837
PfeI GAWTC 5 cut(s) 47, 278, 485, 676, 1005
PkrI GCNGC 3 cut(s) 7, 55, 247
PleI GAGTC 1 cut(s) 881
PluTI GGCGCC 1 cut(s) 11
PpsI GAGTC 1 cut(s) 881
PspN4I GGNNCC 3 cut(s) 9, 456, 610
PspPI GGNCC 2 cut(s) 514, 609
PstI CTGCAG 1 cut(s) 469
PsuI RGATCY 2 cut(s) 421, 454
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
SaqAI TTAA 8 cut(s) 24, 441, 531, 576, 632, 956, 981, 1107
SatI GCNGC 3 cut(s) 6, 54, 246
Sau3AI GATC 4 cut(s) 421, 454, 667, 1035
Sau96I GGNCC 2 cut(s) 514, 609
SchI GAGTC 1 cut(s) 881
ScrFI CCNGG 1 cut(s) 583
SfaNI GCATC 4 cut(s) 298, 511, 979, 1075
SfcI CTRYAG 1 cut(s) 465
SfoI GGCGCC 1 cut(s) 9
SfuI TTCGAA 1 cut(s) 560
SinI GGWCC 1 cut(s) 514
SmiI ATTTAAAT 1 cut(s) 577
SmlI CTYRAG 2 cut(s) 224, 1106
SmoI CTYRAG 2 cut(s) 224, 1106
Sse9I AATT 6 cut(s) 230, 403, 501, 543, 629, 894
SsiI CCGC 5 cut(s) 5, 51, 54, 710, 912
SspDI GGCGCC 1 cut(s) 7
SspMI CTAG 3 cut(s) 261, 525, 639
StyD4I CCNGG 1 cut(s) 581
StyI CCWWGG 1 cut(s) 188
SwaI ATTTAAAT 1 cut(s) 577
TaaI ACNGT 2 cut(s) 343, 797
TaiI ACGT 2 cut(s) 33, 382
TaqI TCGA 4 cut(s) 74, 213, 560, 1038
TasI AATT 6 cut(s) 230, 403, 501, 543, 629, 894
TauI GCSGC 2 cut(s) 8, 56
TfiI GAWTC 5 cut(s) 47, 278, 485, 676, 1005
Tru1I TTAA 8 cut(s) 24, 441, 531, 576, 632, 956, 981, 1107
Tru9I TTAA 8 cut(s) 24, 441, 531, 576, 632, 956, 981, 1107
TscAI CASTG 1 cut(s) 802
TseFI GTSAC 2 cut(s) 352, 473
TseI GCWGC 1 cut(s) 245
Tsp45I GTSAC 2 cut(s) 352, 473
TspDTI ATGAA 8 cut(s) 83, 309, 396, 867, 945, 997, 1025, 1056
TspRI CASTG 1 cut(s) 802
Vha464I CTTAAG 1 cut(s) 1106
VpaK11BI GGWCC 1 cut(s) 514
XspI CTAG 3 cut(s) 261, 525, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.