RLG00000004004
ERF Family

PIN2 TERF1-interacting telomerase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0011435
Physical Location & Seq
Forward (+)
55169080 .. 55171986
2907 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004004

Sequence Viewer

Length: 1098 bp
ATGGCCGCACCGGAAGCCCCTGTCAACTATGTCGGTGTGGCCAAAAAGTCCGCCGCTTTCCGCCTCATGAAACAAATGGGCTGGGAAGAAGGAGAAGGGCTTGGGAAAGACAAGCAGGGGATCAAAGGCTATGTTAGAGTCAAAAACAAGCAGGACACTGCTGGTGTTGGTGTTGAGAAGCCTAACCAGTGGGCATTTGATACAACCCAATTCGATAGCATCCTCAAAAGATTGAAAGTGCAAGCAGCTCAACCATTTGATGAAGCTGCTGACAAGAACAAGATGAGCACTGAAGTGGAAAGTGAGGATGATTTGCCTGGTGAGGTTAAGGAACCAGCTGTCAAGGCTACTCGACCACAGGGAAGATATAAGAGAAGAGAAAGAGGAAAGCTTGTCGATGCTTATTCTTCCAAGGATCTTGAAGGAATCCTTGTCAAAAGGGCGGTGTCTCCAGAGATAAATTATCTTGATGATGAGTCAGAGAAGGCAACCGAGATTCAAGTTATATGTCCTGAAGAAACCACATGTAAAGAGATTCCTCCAAATTGGTGGGGCCATAAATATGGGTTCGTCCCTGGGGGTTTGCTTGGTGCAGAATTGAAAAGAAGGAAGTTAGAAAAGTCTCAAGCGAATGAGAGAACTATGTTTTACGAGGATGATCAAGTAAATCTGTACAATCTTGTTCAGGACAAATCCACAACTGGAAAGCAAGGACTAGGCATTAAGGACCGGAAAAAGAAAGTAGCCGGTTGCTACTTTGAGGGGAAAAAGACATCATTTAATGATAGCGATGATGAAGGTTCTGCTGATCGTGGCTCTCCCATGGAAGACAAACAAGATGAGTCGTTGGAAGTGGGAAGTGGCAATGAACCAAAACTAAAGCTGAAAAAGCTTTCTAAACAGCTTCTTCGTCAGGCACCTGGAGAGTCAATGAAACTGAAAGCACTGAAAGCTTTGATCGATGAAAATTCATCTTCTGTTTTCTCTGACTTTTCTTCAAAAAGAGATGCTGTTGCTTACTTGAGACAAAAGCTGGAAGGTAGCTCAAAGTTTATTGTGGAAGGGAAAAAAGTGAGTCTCAGATTGAAGACAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000723 GO:0000775 GO:0000776 GO:0000781 GO:0000784 GO:0000819 GO:0003674 GO:0003676 GO:0003723 GO:0004857 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005819 GO:0005856 GO:0006139 GO:0006259 GO:0006278 GO:0006725 GO:0006807 GO:0006996 GO:0007004 GO:0007049 GO:0007059 GO:0007080 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010389 GO:0010521 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010639 GO:0010833 GO:0010948 GO:0010972 GO:0015630 GO:0016043 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022402 GO:0030234 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0031647 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0032268 GO:0032269 GO:0032879 GO:0032880 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033365 GO:0034502 GO:0034504 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0042592 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043388 GO:0044092 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0045786 GO:0045930 GO:0045934 GO:0046483 GO:0048285 GO:0048518 GO:0048519 GO:0048523 GO:0050000 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051053 GO:0051098 GO:0051099 GO:0051101 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051246 GO:0051248 GO:0051276 GO:0051303 GO:0051310 GO:0051338 GO:0051348 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051726 GO:0051972 GO:0051974 GO:0060249 GO:0060255 GO:0060341 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070034 GO:0070198 GO:0070727 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:0098687 GO:0098772 GO:0098813 GO:0140014 GO:1900180 GO:1900182 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902570 GO:1902749 GO:1902750 GO:1903047 GO:1903320 GO:1903321 GO:1903827 GO:1903829 GO:1904356 GO:1904357 GO:1904742 GO:1904744 GO:1904749 GO:1904751 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch

Protein Analysis

366

Amino Acids

40.7

Weight (kDa)

8.94

Isoelectric Point (pI)

42.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch PF01585 16 - 59 3.1e-15 G-patch domain
WHD_LYAR PF25879 290 - 361 7.6e-22 LYAR family winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63980 AT1G63980
fragaria_vesca FvH4_5g03190 FvH4_5g03190
malus_domestica MD06G1091000.v1.1 MD14G1111900.v1.1
prunus_persica Prupe.5G106500_v2.0.a1
pyrus_communis pycom06g08660 pycom14g10660
rosa_chinensis RchiOBHm_Chr7g0196591
rosa_laevigata RLG00000004004
rosa_multiflora Rmu_sc0006080.1_g000003
rosa_roxburghii Rroxscaffold_3G00259180
rosa_rugosa Rorug07G0035000 Rorug07G0035100
rosa_samantha Rh7AG159000 Rh7BG161000 Rh7CG167400 Rh7DG160200
rosa_wichuraiana Rw7G013900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 916
AciI CCGC 5 cut(s) 6, 51, 54, 61, 443
AclWI GGATC 2 cut(s) 128, 423
AcoI YGGCCR 2 cut(s) 3, 39
AcsI RAATTY 1 cut(s) 967
AcuI CTGAAG 2 cut(s) 312, 534
AfaI GTAC 1 cut(s) 674
AflIII ACRYGT 1 cut(s) 524
AgsI TTSAA 6 cut(s) 235, 422, 500, 601, 999, 1087
AjnI CCWGG 3 cut(s) 316, 574, 919
AleI CACNNNNGTG 1 cut(s) 293
Alw21I GWGCWC 1 cut(s) 290
Alw26I GTCTC 4 cut(s) 453, 627, 1018, 1082
AlwI GGATC 2 cut(s) 128, 423
AoxI GGCC 3 cut(s) 3, 39, 553
ApeKI GCWGC 2 cut(s) 245, 266
ApoI RAATTY 1 cut(s) 967
AspS9I GGNCC 2 cut(s) 553, 727
AsuHPI GGTGA 1 cut(s) 332
AvaII GGWCC 1 cut(s) 727
BalI TGGCCA 1 cut(s) 41
BanI GGYRCC 1 cut(s) 916
BbsI GAAGAC 2 cut(s) 834, 1094
Bbv12I GWGCWC 1 cut(s) 290
BbvI GCAGC 2 cut(s) 253, 257
BciT130I CCWGG 3 cut(s) 318, 576, 921
BclI TGATCA 1 cut(s) 658
BcoDI GTCTC 4 cut(s) 453, 627, 1018, 1082
BfaI CTAG 1 cut(s) 716
BisI GCNGC 4 cut(s) 6, 54, 246, 267
BlsI GCNGC 4 cut(s) 7, 55, 247, 268
Bme1390I CCNGG 3 cut(s) 318, 576, 921
Bme18I GGWCC 1 cut(s) 727
BmgT120I GGNCC 2 cut(s) 553, 727
BmiI GGNNCC 3 cut(s) 333, 554, 918
BmrFI CCNGG 3 cut(s) 318, 576, 921
BmsI GCATC 3 cut(s) 228, 388, 997
BpiI GAAGAC 2 cut(s) 834, 1094
BpmI CTGGAG 2 cut(s) 435, 942
BpuEI CTTGAG 2 cut(s) 609, 1042
Bsa29I ATCGAT 1 cut(s) 960
BsaJI CCNNGG 4 cut(s) 411, 574, 575, 822
BsaWI WCCGGW 2 cut(s) 10, 729
Bse118I RCCGGY 1 cut(s) 746
Bse1I ACTGG 2 cut(s) 187, 706
Bse3DI GCAATG 1 cut(s) 871
BseBI CCWGG 3 cut(s) 318, 576, 921
BseCI ATCGAT 1 cut(s) 960
BseDI CCNNGG 4 cut(s) 411, 574, 575, 822
BseGI GGATG 3 cut(s) 219, 313, 661
BseMI GCAATG 1 cut(s) 871
BseMII CTCAG 1 cut(s) 1093
BseNI ACTGG 2 cut(s) 187, 706
BseXI GCAGC 2 cut(s) 253, 257
BseYI CCCAGC 1 cut(s) 81
BsgI GTGCAG 1 cut(s) 612
BshFI GGCC 3 cut(s) 5, 41, 555
BshNI GGYRCC 1 cut(s) 916
BshVI ATCGAT 1 cut(s) 960
BsiHKAI GWGCWC 1 cut(s) 290
BsiSI CCGG 3 cut(s) 11, 730, 747
BslFI GGGAC 1 cut(s) 557
BsmAI GTCTC 4 cut(s) 453, 627, 1018, 1082
BsmFI GGGAC 1 cut(s) 557
BsnI GGCC 3 cut(s) 5, 41, 555
Bsp1286I GDGCHC 1 cut(s) 290
Bsp1407I TGTACA 1 cut(s) 672
Bsp143I GATC 5 cut(s) 120, 415, 658, 808, 957
Bsp19I CCATGG 1 cut(s) 822
BspACI CCGC 5 cut(s) 6, 51, 54, 61, 443
BspANI GGCC 3 cut(s) 5, 41, 555
BspCNI CTCAG 1 cut(s) 1092
BspDI ATCGAT 1 cut(s) 960
BspHI TCATGA 1 cut(s) 66
BspLI GGNNCC 3 cut(s) 333, 554, 918
BspPI GGATC 2 cut(s) 128, 423
BspT107I GGYRCC 1 cut(s) 916
BsrDI GCAATG 1 cut(s) 871
BsrFI RCCGGY 1 cut(s) 746
BsrGI TGTACA 1 cut(s) 672
BsrI ACTGG 2 cut(s) 187, 706
BssAI RCCGGY 1 cut(s) 746
BssECI CCNNGG 4 cut(s) 411, 574, 575, 822
BssMI GATC 5 cut(s) 120, 415, 658, 808, 957
BssT1I CCWWGG 2 cut(s) 411, 822
Bst2UI CCWGG 3 cut(s) 318, 576, 921
Bst6I CTCTTC 1 cut(s) 370
BstAUI TGTACA 1 cut(s) 672
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 1 cut(s) 1079
BstDSI CCRYGG 1 cut(s) 822
BstF5I GGATG 3 cut(s) 219, 313, 661
BstKTI GATC 5 cut(s) 123, 418, 661, 811, 960
BstMAI GTCTC 4 cut(s) 453, 627, 1018, 1082
BstMBI GATC 5 cut(s) 120, 415, 658, 808, 957
BstMWI GCNNNNNNNGC 4 cut(s) 14, 344, 889, 950
BstNI CCWGG 3 cut(s) 318, 576, 921
BstNSI RCATGY 1 cut(s) 528
BstSCI CCNGG 3 cut(s) 316, 574, 919
BstV1I GCAGC 2 cut(s) 253, 257
BstV2I GAAGAC 2 cut(s) 834, 1094
BstX2I RGATCY 1 cut(s) 415
BstXI CCANNNNNNTGG 2 cut(s) 549, 563
BstYI RGATCY 1 cut(s) 415
Bsu15I ATCGAT 1 cut(s) 960
BsuRI GGCC 3 cut(s) 5, 41, 555
BsuTUI ATCGAT 1 cut(s) 960
BtgI CCRYGG 1 cut(s) 822
BtgZI GCGATG 1 cut(s) 804
BtsCI GGATG 3 cut(s) 219, 313, 661
BtsI GCAGTG 1 cut(s) 156
BtsIMutI CAGTG 4 cut(s) 156, 194, 288, 944
Cac8I GCNNGC 1 cut(s) 243
CciI TCATGA 1 cut(s) 66
Cfr10I RCCGGY 1 cut(s) 746
Cfr13I GGNCC 2 cut(s) 553, 727
ClaI ATCGAT 1 cut(s) 960
Csp6I GTAC 1 cut(s) 673
CviAII CATG 3 cut(s) 67, 525, 823
CviQI GTAC 1 cut(s) 673
DdeI CTNAG 1 cut(s) 1079
DpnI GATC 5 cut(s) 122, 417, 660, 810, 959
DpnII GATC 5 cut(s) 120, 415, 658, 808, 957
EaeI YGGCCR 2 cut(s) 3, 39
Eam1104I CTCTTC 1 cut(s) 370
EarI CTCTTC 1 cut(s) 370
EciI GGCGGA 2 cut(s) 40, 50
Eco130I CCWWGG 2 cut(s) 411, 822
Eco47I GGWCC 1 cut(s) 727
Eco57I CTGAAG 2 cut(s) 312, 534
EcoRII CCWGG 3 cut(s) 316, 574, 919
EcoT14I CCWWGG 2 cut(s) 411, 822
ErhI CCWWGG 2 cut(s) 411, 822
FaeI CATG 3 cut(s) 70, 528, 826
FalI AAGNNNNNCTT 2 cut(s) 414, 446
FaqI GGGAC 1 cut(s) 557
FatI CATG 3 cut(s) 66, 524, 822
FbaI TGATCA 1 cut(s) 658
Fnu4HI GCNGC 4 cut(s) 6, 54, 246, 267
FokI GGATG 3 cut(s) 206, 320, 668
Fsp4HI GCNGC 4 cut(s) 6, 54, 246, 267
FspBI CTAG 1 cut(s) 716
GluI GCNGC 4 cut(s) 6, 54, 246, 267
GsaI CCCAGC 1 cut(s) 85
GsuI CTGGAG 2 cut(s) 435, 942
HaeIII GGCC 3 cut(s) 5, 41, 555
HapII CCGG 3 cut(s) 11, 730, 747
Hin1II CATG 3 cut(s) 70, 528, 826
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HindIII AAGCTT 3 cut(s) 389, 890, 951
HinfI GANTC 8 cut(s) 138, 426, 476, 496, 535, 842, 926, 1075
HpaII CCGG 3 cut(s) 11, 730, 747
HphI GGTGA 1 cut(s) 332
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 3 cut(s) 481, 988, 1082
Hpy188III TCNNGA 6 cut(s) 67, 419, 452, 467, 512, 686
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 8 cut(s) 83, 89, 416, 478, 600, 791, 1031, 1055
HpyCH4V TGCA 2 cut(s) 241, 593
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 344, 889, 950
HpyF3I CTNAG 1 cut(s) 1079
Hsp92II CATG 3 cut(s) 70, 528, 826
Ksp22I TGATCA 1 cut(s) 658
Kzo9I GATC 5 cut(s) 120, 415, 658, 808, 957
Lsp1109I GCAGC 2 cut(s) 253, 257
LweI GCATC 3 cut(s) 228, 388, 997
MaeI CTAG 1 cut(s) 716
MalI GATC 5 cut(s) 122, 417, 660, 810, 959
MboI GATC 5 cut(s) 120, 415, 658, 808, 957
MboII GAAGA 9 cut(s) 98, 375, 387, 399, 527, 839, 899, 966, 987
MflI RGATCY 1 cut(s) 415
MhlI GDGCHC 1 cut(s) 290
MlsI TGGCCA 1 cut(s) 41
MluCI AATT 5 cut(s) 209, 460, 544, 596, 967
MluNI TGGCCA 1 cut(s) 41
MlyI GAGTC 5 cut(s) 147, 485, 851, 935, 1084
MmeI TCCRAC 1 cut(s) 828
MnlI CCTC 8 cut(s) 74, 233, 298, 316, 377, 549, 646, 754
Mox20I TGGCCA 1 cut(s) 41
MscI TGGCCA 1 cut(s) 41
MseI TTAA 3 cut(s) 327, 723, 780
MslI CAYNNNNRTG 2 cut(s) 293, 561
Msp20I TGGCCA 1 cut(s) 41
MspA1I CMGCKG 1 cut(s) 338
MspI CCGG 3 cut(s) 11, 730, 747
MspR9I CCNGG 3 cut(s) 318, 576, 921
MvaI CCWGG 3 cut(s) 318, 576, 921
MwoI GCNNNNNNNGC 4 cut(s) 14, 344, 889, 950
NcoI CCATGG 1 cut(s) 822
NdeII GATC 5 cut(s) 120, 415, 658, 808, 957
NlaIII CATG 3 cut(s) 70, 528, 826
NlaIV GGNNCC 3 cut(s) 333, 554, 918
NspI RCATGY 1 cut(s) 528
OliI CACNNNNGTG 1 cut(s) 293
PagI TCATGA 1 cut(s) 66
PasI CCCWGGG 1 cut(s) 575
PciI ACATGT 1 cut(s) 524
PfeI GAWTC 3 cut(s) 426, 496, 535
PkrI GCNGC 4 cut(s) 7, 55, 247, 268
PleI GAGTC 5 cut(s) 146, 484, 850, 934, 1083
PpsI GAGTC 5 cut(s) 146, 484, 850, 934, 1083
PscI ACATGT 1 cut(s) 524
Psp6I CCWGG 3 cut(s) 316, 574, 919
PspFI CCCAGC 1 cut(s) 81
PspGI CCWGG 3 cut(s) 316, 574, 919
PspN4I GGNNCC 3 cut(s) 333, 554, 918
PspPI GGNCC 2 cut(s) 553, 727
PsuI RGATCY 1 cut(s) 415
PvuII CAGCTG 1 cut(s) 338
RsaI GTAC 1 cut(s) 674
RsaNI GTAC 1 cut(s) 673
RseI CAYNNNNRTG 2 cut(s) 293, 561
SaqAI TTAA 3 cut(s) 327, 723, 780
SatI GCNGC 4 cut(s) 6, 54, 246, 267
Sau3AI GATC 5 cut(s) 120, 415, 658, 808, 957
Sau96I GGNCC 2 cut(s) 553, 727
SchI GAGTC 5 cut(s) 147, 485, 851, 935, 1084
ScrFI CCNGG 3 cut(s) 318, 576, 921
SduI GDGCHC 1 cut(s) 290
SfaNI GCATC 3 cut(s) 228, 388, 997
SinI GGWCC 1 cut(s) 727
SmiMI CAYNNNNRTG 2 cut(s) 293, 561
SmlI CTYRAG 2 cut(s) 624, 1021
SmoI CTYRAG 2 cut(s) 624, 1021
Sse9I AATT 5 cut(s) 209, 460, 544, 596, 967
SsiI CCGC 5 cut(s) 6, 51, 54, 61, 443
SspMI CTAG 1 cut(s) 716
StyD4I CCNGG 3 cut(s) 316, 574, 919
StyI CCWWGG 2 cut(s) 411, 822
TaqI TCGA 4 cut(s) 213, 352, 396, 960
TasI AATT 5 cut(s) 209, 460, 544, 596, 967
TatI WGTACW 1 cut(s) 672
TauI GCSGC 2 cut(s) 8, 56
TfiI GAWTC 3 cut(s) 426, 496, 535
Tru1I TTAA 3 cut(s) 327, 723, 780
Tru9I TTAA 3 cut(s) 327, 723, 780
TscAI CASTG 4 cut(s) 163, 194, 295, 951
TseI GCWGC 2 cut(s) 245, 266
TspDTI ATGAA 7 cut(s) 83, 276, 810, 882, 947, 960, 978
TspRI CASTG 4 cut(s) 163, 194, 295, 951
VpaK11BI GGWCC 1 cut(s) 727
XapI RAATTY 1 cut(s) 967
XceI RCATGY 1 cut(s) 528
XspI CTAG 1 cut(s) 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.