pycom06g08660
ERF Family

PIN2 TERF1-interacting telomerase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0011435
Physical Location & Seq
Forward (+)
13872430 .. 13875533
3104 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g08660.9

Sequence Viewer

Length: 1104 bp
ATGGCCGCCCCCGAAGCCCCTCTCTGTTACGTTGGCGTCGCCAGAAAGTCCGCCGCTTTCCGCCTCATGAAACAAATGGGATGGGAAGAAGGAGAAGGTCTTGGGAAAGACAAGCAGGGGATCAAAGGTTACGTAAGAGTAAAAAACAAGCAGGACAATGCTGGTGTTGGTGTAGAGAAGCCTAACCAATGGGCATTCGATACGACTCAATTCGATAGCATCCTCAAAAGATTGAAAGTTCAAGCAGCGCAACCCAGTGATGAAGTTGGTGAGGCGAACGCCACTCAAGAGGAAAGTGATACTGAATTGCCTCGTGATGTTAAGGAGCCAGTTGCCAAGGCTACTCGACCACAGGGAAGATATAGGAGAAGAGAACGAGGAAAGCTTGTCAATGCTTATTCTTCTAAGGATATTGAAGGAATCCTTGTCAGAAGGGCAGCATCTCCAGGGATTAATTTCGATCTGGATGGAGAAGTAGAGTCAGACAAGGCATCTAAGATTCAAGTTATTTGCCCTGAAGGAGAAGCATGCAAAGAAATTCCTTCAGATTGGTGGGGCCATAAATATGGGTTTACCCGCGGAGGTTTGCTTGGAGCAGAGATGAAAAGAAGAAAATTAGAAATGTCTGAAAATGGTAATGAGAGAAAAATGTTTTACGAGGATGATCAAGTAAATCTTTACAATCTTGTTCAGGATAAATCCACAACTGGAAAGCAAGGACTAGGCATCAAGGACCGGAAAAAGAAAGTAGCCGGTTGCTACTTTGAGGGGAAAAAGACCTCATTTAATGATAGCGATGATGAAGATTCTACTGATCTTGGTTCCCCTGTGAAACAAAAAGAAGATGACTTGTTGAAAATGGAAATTAGCAATGAACCAAAAGTGAAGCTAAAAAAGCTTTGTAAACAGCTCGTTCGTCAGGCACCTGGAGAGTCACTGAAGCTGAAAACGTTGAAAGCTTTGATCGATGAACATTCATCTTCCGTTTTCTCGGACTTTTCTTCAAAGAGAGATGCTCTTGCTTACTTGAGACAAAAGCTGGACGGCAGCAAAACTTTCATGGTGGAAGGAAAAAAAGCAAGTCTCAGGTCGAGGAGGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000723 GO:0000775 GO:0000776 GO:0000781 GO:0000784 GO:0000819 GO:0003674 GO:0003676 GO:0003723 GO:0004857 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005819 GO:0005856 GO:0006139 GO:0006259 GO:0006278 GO:0006725 GO:0006807 GO:0006996 GO:0007004 GO:0007049 GO:0007059 GO:0007080 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010389 GO:0010521 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010639 GO:0010833 GO:0010948 GO:0010972 GO:0015630 GO:0016043 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022402 GO:0030234 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0031647 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0032268 GO:0032269 GO:0032879 GO:0032880 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033365 GO:0034502 GO:0034504 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0042592 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043388 GO:0044092 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0045786 GO:0045930 GO:0045934 GO:0046483 GO:0048285 GO:0048518 GO:0048519 GO:0048523 GO:0050000 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051053 GO:0051098 GO:0051099 GO:0051101 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051246 GO:0051248 GO:0051276 GO:0051303 GO:0051310 GO:0051338 GO:0051348 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051726 GO:0051972 GO:0051974 GO:0060249 GO:0060255 GO:0060341 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070034 GO:0070198 GO:0070727 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:0098687 GO:0098772 GO:0098813 GO:0140014 GO:1900180 GO:1900182 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902570 GO:1902749 GO:1902750 GO:1903047 GO:1903320 GO:1903321 GO:1903827 GO:1903829 GO:1904356 GO:1904357 GO:1904742 GO:1904744 GO:1904749 GO:1904751 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch

Protein Analysis

368

Amino Acids

41.07

Weight (kDa)

9.17

Isoelectric Point (pI)

45.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63980 AT1G63980
fragaria_vesca FvH4_5g03190 FvH4_5g03190
malus_domestica MD06G1091000.v1.1 MD14G1111900.v1.1
prunus_persica Prupe.5G106500_v2.0.a1
pyrus_communis pycom06g08660 pycom14g10660
rosa_chinensis RchiOBHm_Chr7g0196591
rosa_laevigata RLG00000004004
rosa_multiflora Rmu_sc0006080.1_g000003
rosa_roxburghii Rroxscaffold_3G00259180
rosa_rugosa Rorug07G0035000 Rorug07G0035100
rosa_samantha Rh7AG159000 Rh7BG161000 Rh7CG167400 Rh7DG160200
rosa_wichuraiana Rw7G013900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 922
AccII CGCG 1 cut(s) 579
AciI CCGC 6 cut(s) 6, 51, 54, 61, 577, 579
AclI AACGTT 1 cut(s) 950
AclWI GGATC 1 cut(s) 128
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 537
AcuI CTGAAG 3 cut(s) 528, 537, 959
AcyI GRCGYC 1 cut(s) 36
AgsI TTSAA 7 cut(s) 235, 242, 416, 503, 856, 955, 1005
AjnI CCWGG 2 cut(s) 445, 925
AluBI AGCT 7 cut(s) 385, 889, 898, 910, 943, 959, 1039
AluI AGCT 7 cut(s) 385, 889, 898, 910, 943, 959, 1039
Alw26I GTCTC 2 cut(s) 1024, 1088
AlwI GGATC 1 cut(s) 128
AoxI GGCC 2 cut(s) 3, 556
ApeKI GCWGC 3 cut(s) 245, 437, 1047
ApoI RAATTY 1 cut(s) 537
AseI ATTAAT 1 cut(s) 453
AspLEI GCGC 1 cut(s) 250
AspS9I GGNCC 2 cut(s) 556, 733
AsuHPI GGTGA 1 cut(s) 281
AvaII GGWCC 1 cut(s) 733
BanI GGYRCC 1 cut(s) 922
BauI CACGAG 1 cut(s) 312
BbvI GCAGC 3 cut(s) 257, 449, 1059
BccI CCATC 2 cut(s) 75, 461
BceAI ACGGC 1 cut(s) 1060
BciT130I CCWGG 2 cut(s) 447, 927
BclI TGATCA 1 cut(s) 664
BcoDI GTCTC 2 cut(s) 1024, 1088
BfaI CTAG 1 cut(s) 722
BisI GCNGC 5 cut(s) 6, 54, 246, 438, 1048
BlsI GCNGC 5 cut(s) 7, 55, 247, 439, 1049
Bme1390I CCNGG 2 cut(s) 447, 927
Bme18I GGWCC 1 cut(s) 733
BmgT120I GGNCC 2 cut(s) 556, 733
BmiI GGNNCC 4 cut(s) 327, 557, 823, 924
BmrFI CCNGG 2 cut(s) 447, 927
BmrI ACTGGG 1 cut(s) 249
BmsI GCATC 5 cut(s) 228, 449, 500, 735, 1003
BmuI ACTGGG 1 cut(s) 249
BplI GAGNNNNNCTC 2 cut(s) 1000, 1032
BpmI CTGGAG 2 cut(s) 429, 948
BpuEI CTTGAG 2 cut(s) 270, 1048
Bsa29I ATCGAT 1 cut(s) 966
BsaAI YACGTR 1 cut(s) 133
BsaHI GRCGYC 1 cut(s) 36
BsaJI CCNNGG 3 cut(s) 336, 446, 577
BsaWI WCCGGW 1 cut(s) 735
Bse118I RCCGGY 1 cut(s) 752
Bse1I ACTGG 3 cut(s) 255, 329, 712
Bse3DI GCAATG 1 cut(s) 877
BseBI CCWGG 2 cut(s) 447, 927
BseCI ATCGAT 1 cut(s) 966
BseDI CCNNGG 3 cut(s) 336, 446, 577
BseGI GGATG 4 cut(s) 86, 219, 472, 667
BseMI GCAATG 1 cut(s) 877
BseMII CTCAG 1 cut(s) 1099
BseNI ACTGG 3 cut(s) 255, 329, 712
BseXI GCAGC 3 cut(s) 257, 449, 1059
Bsh1236I CGCG 1 cut(s) 579
BshFI GGCC 2 cut(s) 5, 558
BshNI GGYRCC 1 cut(s) 922
BshVI ATCGAT 1 cut(s) 966
BsiSI CCGG 2 cut(s) 736, 753
BsmAI GTCTC 2 cut(s) 1024, 1088
BsmI GAATGC 1 cut(s) 194
BsnI GGCC 2 cut(s) 5, 558
Bsp143I GATC 5 cut(s) 120, 460, 664, 814, 963
BspACI CCGC 6 cut(s) 6, 51, 54, 61, 577, 579
BspANI GGCC 2 cut(s) 5, 558
BspCNI CTCAG 1 cut(s) 1098
BspDI ATCGAT 1 cut(s) 966
BspFNI CGCG 1 cut(s) 579
BspHI TCATGA 1 cut(s) 66
BspLI GGNNCC 4 cut(s) 327, 557, 823, 924
BspPI GGATC 1 cut(s) 128
BspT107I GGYRCC 1 cut(s) 922
BsrDI GCAATG 1 cut(s) 877
BsrFI RCCGGY 1 cut(s) 752
BsrI ACTGG 3 cut(s) 255, 329, 712
BssAI RCCGGY 1 cut(s) 752
BssECI CCNNGG 3 cut(s) 336, 446, 577
BssMI GATC 5 cut(s) 120, 460, 664, 814, 963
BssNI GRCGYC 1 cut(s) 36
BssSI CACGAG 1 cut(s) 312
BssT1I CCWWGG 1 cut(s) 336
Bst2BI CACGAG 1 cut(s) 312
Bst2UI CCWGG 2 cut(s) 447, 927
Bst6I CTCTTC 1 cut(s) 364
BstACI GRCGYC 1 cut(s) 36
BstBAI YACGTR 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 529
BstDEI CTNAG 3 cut(s) 405, 495, 1085
BstDSI CCRYGG 1 cut(s) 577
BstF5I GGATG 4 cut(s) 86, 219, 472, 667
BstFNI CGCG 1 cut(s) 579
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 5 cut(s) 123, 463, 667, 817, 966
BstMAI GTCTC 2 cut(s) 1024, 1088
BstMBI GATC 5 cut(s) 120, 460, 664, 814, 963
BstMWI GCNNNNNNNGC 2 cut(s) 14, 895
BstNI CCWGG 2 cut(s) 447, 927
BstNSI RCATGY 1 cut(s) 531
BstSCI CCNGG 2 cut(s) 445, 925
BstSNI TACGTA 1 cut(s) 133
BstUI CGCG 1 cut(s) 579
BstV1I GCAGC 3 cut(s) 257, 449, 1059
BstXI CCANNNNNNTGG 1 cut(s) 566
Bsu15I ATCGAT 1 cut(s) 966
BsuRI GGCC 2 cut(s) 5, 558
BsuTUI ATCGAT 1 cut(s) 966
BtgI CCRYGG 1 cut(s) 577
BtgZI GCGATG 1 cut(s) 810
BtsCI GGATG 4 cut(s) 86, 219, 472, 667
BtsIMutI CAGTG 2 cut(s) 262, 935
Cac8I GCNNGC 1 cut(s) 529
CciI TCATGA 1 cut(s) 66
CfoI GCGC 1 cut(s) 250
Cfr10I RCCGGY 1 cut(s) 752
Cfr13I GGNCC 2 cut(s) 556, 733
Cfr42I CCGCGG 1 cut(s) 580
ClaI ATCGAT 1 cut(s) 966
CseI GACGC 1 cut(s) 25
CviAII CATG 3 cut(s) 67, 528, 1060
DdeI CTNAG 3 cut(s) 405, 495, 1085
DpnI GATC 5 cut(s) 122, 462, 666, 816, 965
DpnII GATC 5 cut(s) 120, 460, 664, 814, 963
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 364
EarI CTCTTC 1 cut(s) 364
EciI GGCGGA 2 cut(s) 40, 50
Eco105I TACGTA 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 336
Eco47I GGWCC 1 cut(s) 733
Eco57I CTGAAG 3 cut(s) 528, 537, 959
EcoRII CCWGG 2 cut(s) 445, 925
EcoT14I CCWWGG 1 cut(s) 336
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 3 cut(s) 70, 531, 1063
FaiI YATR 6 cut(s) 68, 363, 529, 561, 567, 1061
FalI AAGNNNNNCTT 4 cut(s) 408, 440, 660, 692
FatI CATG 3 cut(s) 66, 527, 1059
FauI CCCGC 1 cut(s) 584
FbaI TGATCA 1 cut(s) 664
Fnu4HI GCNGC 5 cut(s) 6, 54, 246, 438, 1048
FokI GGATG 4 cut(s) 93, 206, 479, 674
Fsp4HI GCNGC 5 cut(s) 6, 54, 246, 438, 1048
FspBI CTAG 1 cut(s) 722
GlaI GCGC 1 cut(s) 249
GluI GCNGC 5 cut(s) 6, 54, 246, 438, 1048
GsuI CTGGAG 2 cut(s) 429, 948
HaeIII GGCC 2 cut(s) 5, 558
HapII CCGG 2 cut(s) 736, 753
HgaI GACGC 1 cut(s) 25
HhaI GCGC 1 cut(s) 250
Hin1I GRCGYC 1 cut(s) 36
Hin1II CATG 3 cut(s) 70, 531, 1063
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HindIII AAGCTT 3 cut(s) 383, 896, 957
HinfI GANTC 6 cut(s) 205, 420, 479, 499, 806, 932
HpaII CCGG 2 cut(s) 736, 753
HphI GGTGA 1 cut(s) 281
Hpy166II GTNNAC 2 cut(s) 573, 905
Hpy188I TCNGA 5 cut(s) 431, 484, 547, 628, 994
Hpy188III TCNNGA 5 cut(s) 67, 287, 314, 464, 692
Hpy8I GTNNAC 2 cut(s) 573, 905
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 7 cut(s) 83, 89, 410, 426, 512, 552, 1061
HpyCH4IV ACGT 3 cut(s) 30, 132, 950
HpyCH4V TGCA 1 cut(s) 531
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 895
HpyF3I CTNAG 3 cut(s) 405, 495, 1085
HpySE526I ACGT 3 cut(s) 30, 132, 950
Hsp92I GRCGYC 1 cut(s) 36
Hsp92II CATG 3 cut(s) 70, 531, 1063
HspAI GCGC 1 cut(s) 248
Ksp22I TGATCA 1 cut(s) 664
KspI CCGCGG 1 cut(s) 580
Kzo9I GATC 5 cut(s) 120, 460, 664, 814, 963
LmnI GCTCC 2 cut(s) 325, 593
Lsp1109I GCAGC 3 cut(s) 257, 449, 1059
LweI GCATC 5 cut(s) 228, 449, 500, 735, 1003
MaeI CTAG 1 cut(s) 722
MaeII ACGT 3 cut(s) 30, 132, 950
MaeIII GTNAC 3 cut(s) 26, 128, 933
MalI GATC 5 cut(s) 122, 462, 666, 816, 965
MboI GATC 5 cut(s) 120, 460, 664, 814, 963
MboII GAAGA 9 cut(s) 98, 369, 381, 393, 621, 815, 854, 972, 993
MluCI AATT 6 cut(s) 209, 305, 454, 537, 614, 864
MlyI GAGTC 3 cut(s) 199, 488, 941
MseI TTAA 3 cut(s) 321, 453, 786
MslI CAYNNNNRTG 1 cut(s) 564
MspA1I CMGCKG 1 cut(s) 579
MspI CCGG 2 cut(s) 736, 753
MspR9I CCNGG 2 cut(s) 447, 927
Mva1269I GAATGC 1 cut(s) 194
MvaI CCWGG 2 cut(s) 447, 927
MvnI CGCG 1 cut(s) 579
MwoI GCNNNNNNNGC 2 cut(s) 14, 895
NdeII GATC 5 cut(s) 120, 460, 664, 814, 963
NlaIII CATG 3 cut(s) 70, 531, 1063
NlaIV GGNNCC 4 cut(s) 327, 557, 823, 924
NmuCI GTSAC 1 cut(s) 933
NspI RCATGY 1 cut(s) 531
PaeI GCATGC 1 cut(s) 531
PagI TCATGA 1 cut(s) 66
PctI GAATGC 1 cut(s) 194
PfeI GAWTC 3 cut(s) 420, 499, 806
PkrI GCNGC 5 cut(s) 7, 55, 247, 439, 1049
PleI GAGTC 3 cut(s) 199, 487, 940
PpsI GAGTC 3 cut(s) 199, 487, 940
Ppu21I YACGTR 1 cut(s) 133
PshBI ATTAAT 1 cut(s) 453
Psp1406I AACGTT 1 cut(s) 950
Psp6I CCWGG 2 cut(s) 445, 925
PspGI CCWGG 2 cut(s) 445, 925
PspN4I GGNNCC 4 cut(s) 327, 557, 823, 924
PspPI GGNCC 2 cut(s) 556, 733
RseI CAYNNNNRTG 1 cut(s) 564
SacII CCGCGG 1 cut(s) 580
SaqAI TTAA 3 cut(s) 321, 453, 786
SatI GCNGC 5 cut(s) 6, 54, 246, 438, 1048
Sau3AI GATC 5 cut(s) 120, 460, 664, 814, 963
Sau96I GGNCC 2 cut(s) 556, 733
SchI GAGTC 3 cut(s) 199, 488, 941
ScrFI CCNGG 2 cut(s) 447, 927
SfaNI GCATC 5 cut(s) 228, 449, 500, 735, 1003
Sfr303I CCGCGG 1 cut(s) 580
SgrBI CCGCGG 1 cut(s) 580
SinI GGWCC 1 cut(s) 733
SmiMI CAYNNNNRTG 1 cut(s) 564
SmlI CTYRAG 2 cut(s) 285, 1027
SmoI CTYRAG 2 cut(s) 285, 1027
SnaBI TACGTA 1 cut(s) 133
SphI GCATGC 1 cut(s) 531
Sse9I AATT 6 cut(s) 209, 305, 454, 537, 614, 864
SsiI CCGC 6 cut(s) 6, 51, 54, 61, 577, 579
SspMI CTAG 1 cut(s) 722
StyD4I CCNGG 2 cut(s) 445, 925
StyI CCWWGG 1 cut(s) 336
TaiI ACGT 3 cut(s) 33, 135, 953
TaqI TCGA 6 cut(s) 198, 213, 346, 459, 966, 1091
TasI AATT 6 cut(s) 209, 305, 454, 537, 614, 864
TauI GCSGC 2 cut(s) 8, 56
TfiI GAWTC 3 cut(s) 420, 499, 806
Tru1I TTAA 3 cut(s) 321, 453, 786
Tru9I TTAA 3 cut(s) 321, 453, 786
TscAI CASTG 2 cut(s) 262, 942
TseFI GTSAC 1 cut(s) 933
TseI GCWGC 3 cut(s) 245, 437, 1047
Tsp45I GTSAC 1 cut(s) 933
TspDTI ATGAA 8 cut(s) 83, 276, 617, 816, 888, 966, 984, 1048
TspGWI ACGGA 1 cut(s) 973
TspRI CASTG 2 cut(s) 262, 942
VpaK11BI GGWCC 1 cut(s) 733
VspI ATTAAT 1 cut(s) 453
XapI RAATTY 1 cut(s) 537
XceI RCATGY 1 cut(s) 531
XspI CTAG 1 cut(s) 722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.