MD14G1111900.v1.1
ERF Family

PIN2 TERF1-interacting telomerase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0011435
Physical Location & Seq
Forward (+)
17984227 .. 17988163
3937 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1111900.v1.1.491

Sequence Viewer

Length: 1104 bp
ATGGCCTCACCCGAAGCCCCTCTCTGTTACGTCGGTGTCGCCAGAAAATCCGCCGCTTTCCGCCTTATGAAACAAATGGGATGGGAAGAAGGAGAAGGTCTTGGGAAAGACAAGCAGGGGATCAAAGGTTATGTCAGAGTCAAGAACAAGCAGGACACTACTGGTGTTGGTGTGGAGAAGCCTAACCAATGGGCATTCGATACGACCCAATTCGATAGTATCCTCAAAAGATTGAAAGTTCAAGCAGCGCAACCCAGCGATGAAGTTGCTGAGCCGAACGCCACTCAAGAGGAAAGTGATACTGAATTGCCTAGTGATGTTAAGGAACCTGTTGCCAAGGCTACTCGCCCACAGGGAAGATATAAGAAAAGAGAACGAGGAAAGCTTGTCAATGCATATTCTTCTAAGGATATTGAAGGAATCCTTGTCAGAAGGGCGGCGTCTCCAGGGATTAATTTCGATCTGGATGGAGAAGTAGGGTCAGACAAGGCATCTGAAATTCAAGTTATATCCCCTGAAGGAGAAGTATGCAAAGAAATTCCTCTAGATTGGTGGGGCCATAAATATGGGTTTATTCGCGGAGGTTTGCTTGGAGCAGAGATGAAAAGAAGAAAATTAGAAATATCTCAAAATGGTAATGAGAGAAAAATGTTTCACGAGGATGATCAAGTAAATCTTTACAATCTTGTTCAGGATAAATCCACAACTGGAAAGCAAGGACTAGGCATCAAGGACCGGAAAAAGAAAGTAGCTGGTTGCTACTTTGAGGGAAAAAAAACTTCATTTAATGATAGTGATGATGAAGATTCTGCTGATCTTGGTTCTCCTGTGAAACAAAAAGGAGATGAATCTTTGAAAATGGAAAGTAGCAACGAACCAAAACTGAAGCTGAAAAAGCTTTGTAAACAGCTCCTTCGTGAGGCATCTGGAGAGTCATTGAAGCTGAAAACGTTGAAAGCTTTGATCGATGAACATTCATCTTCTGTTTTCTCCAACTTTTCTTCAAAGAGAGATGCTCTTGCTTACTTGAGACAAAAGCTGGAAGGCAGCAAAACTTTTGTGGTGGAAGGGAAAAATGTGAGTCTCCCATTGAGGAGGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000723 GO:0000775 GO:0000776 GO:0000781 GO:0000784 GO:0000819 GO:0003674 GO:0003676 GO:0003723 GO:0004857 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005819 GO:0005856 GO:0006139 GO:0006259 GO:0006278 GO:0006725 GO:0006807 GO:0006996 GO:0007004 GO:0007049 GO:0007059 GO:0007080 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010389 GO:0010521 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010639 GO:0010833 GO:0010948 GO:0010972 GO:0015630 GO:0016043 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022402 GO:0030234 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0031647 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0032268 GO:0032269 GO:0032879 GO:0032880 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033365 GO:0034502 GO:0034504 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0042592 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043388 GO:0044092 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0045786 GO:0045930 GO:0045934 GO:0046483 GO:0048285 GO:0048518 GO:0048519 GO:0048523 GO:0050000 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051053 GO:0051098 GO:0051099 GO:0051101 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051246 GO:0051248 GO:0051276 GO:0051303 GO:0051310 GO:0051338 GO:0051348 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051726 GO:0051972 GO:0051974 GO:0060249 GO:0060255 GO:0060341 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070034 GO:0070198 GO:0070727 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:0098687 GO:0098772 GO:0098813 GO:0140014 GO:1900180 GO:1900182 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902570 GO:1902749 GO:1902750 GO:1903047 GO:1903320 GO:1903321 GO:1903827 GO:1903829 GO:1904356 GO:1904357 GO:1904742 GO:1904744 GO:1904749 GO:1904751 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch

Protein Analysis

368

Amino Acids

40.79

Weight (kDa)

9.09

Isoelectric Point (pI)

41.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch PF01585 16 - 59 4.1e-15 G-patch domain
WHD_LYAR PF25879 292 - 362 1.8e-22 LYAR family winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63980 AT1G63980
fragaria_vesca FvH4_5g03190 FvH4_5g03190
malus_domestica MD06G1091000.v1.1 MD14G1111900.v1.1
prunus_persica Prupe.5G106500_v2.0.a1
pyrus_communis pycom06g08660 pycom14g10660
rosa_chinensis RchiOBHm_Chr7g0196591
rosa_laevigata RLG00000004004
rosa_multiflora Rmu_sc0006080.1_g000003
rosa_roxburghii Rroxscaffold_3G00259180
rosa_rugosa Rorug07G0035000 Rorug07G0035100
rosa_samantha Rh7AG159000 Rh7BG161000 Rh7CG167400 Rh7DG160200
rosa_wichuraiana Rw7G013900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 579
AciI CCGC 5 cut(s) 51, 54, 61, 437, 579
AclI AACGTT 1 cut(s) 950
AclWI GGATC 1 cut(s) 128
AcsI RAATTY 2 cut(s) 498, 537
AcuI CTGAAG 2 cut(s) 537, 905
AcyI GRCGYC 1 cut(s) 440
AfiI CCNNNNNNNGG 1 cut(s) 919
AgsI TTSAA 8 cut(s) 235, 242, 416, 503, 856, 940, 955, 1005
AjnI CCWGG 1 cut(s) 445
AluBI AGCT 8 cut(s) 385, 752, 889, 898, 910, 943, 959, 1039
AluI AGCT 8 cut(s) 385, 752, 889, 898, 910, 943, 959, 1039
Alw26I GTCTC 3 cut(s) 447, 1024, 1088
AlwI GGATC 1 cut(s) 128
AoxI GGCC 2 cut(s) 3, 556
ApeKI GCWGC 2 cut(s) 245, 1047
ApoI RAATTY 2 cut(s) 498, 537
ArsI GACNNNNNNTTYG 2 cut(s) 117, 149
AseI ATTAAT 1 cut(s) 453
AspLEI GCGC 1 cut(s) 250
AspS9I GGNCC 2 cut(s) 556, 733
AvaII GGWCC 1 cut(s) 733
BauI CACGAG 1 cut(s) 656
BbvI GCAGC 2 cut(s) 257, 1059
BccI CCATC 2 cut(s) 75, 461
BcgI CGANNNNNNTGC 2 cut(s) 248, 282
BciT130I CCWGG 1 cut(s) 447
BciVI GTATCC 1 cut(s) 230
BclI TGATCA 1 cut(s) 664
BcoDI GTCTC 3 cut(s) 447, 1024, 1088
BfaI CTAG 3 cut(s) 312, 545, 722
BfuI GTATCC 1 cut(s) 230
BisI GCNGC 4 cut(s) 54, 246, 438, 1048
BlpI GCTNAGC 1 cut(s) 270
BlsI GCNGC 4 cut(s) 55, 247, 439, 1049
Bme1390I CCNGG 1 cut(s) 447
Bme18I GGWCC 1 cut(s) 733
BmgT120I GGNCC 2 cut(s) 556, 733
BmiI GGNNCC 2 cut(s) 327, 557
BmrFI CCNGG 1 cut(s) 447
BmsI GCATC 4 cut(s) 500, 735, 932, 1003
BplI GAGNNNNNCTC 2 cut(s) 1000, 1032
BpmI CTGGAG 2 cut(s) 429, 948
Bpu1102I GCTNAGC 1 cut(s) 270
BpuEI CTTGAG 2 cut(s) 270, 1048
Bsa29I ATCGAT 1 cut(s) 966
BsaHI GRCGYC 1 cut(s) 440
BsaJI CCNNGG 2 cut(s) 336, 446
BsaWI WCCGGW 1 cut(s) 735
Bsc4I CCNNNNNNNGG 1 cut(s) 919
Bse1I ACTGG 2 cut(s) 166, 712
BseBI CCWGG 1 cut(s) 447
BseCI ATCGAT 1 cut(s) 966
BseDI CCNNGG 2 cut(s) 336, 446
BseGI GGATG 3 cut(s) 86, 472, 667
BseLI CCNNNNNNNGG 1 cut(s) 919
BseMII CTCAG 1 cut(s) 261
BseNI ACTGG 2 cut(s) 166, 712
BseXI GCAGC 2 cut(s) 257, 1059
BseYI CCCAGC 1 cut(s) 254
Bsh1236I CGCG 1 cut(s) 579
BshFI GGCC 2 cut(s) 5, 558
BshVI ATCGAT 1 cut(s) 966
BsiSI CCGG 1 cut(s) 736
BslI CCNNNNNNNGG 1 cut(s) 919
BsmAI GTCTC 3 cut(s) 447, 1024, 1088
BsmBI CGTCTC 1 cut(s) 447
BsmI GAATGC 1 cut(s) 194
BsnI GGCC 2 cut(s) 5, 558
Bsp143I GATC 5 cut(s) 120, 460, 664, 814, 963
Bsp1720I GCTNAGC 1 cut(s) 270
BspACI CCGC 5 cut(s) 51, 54, 61, 437, 579
BspANI GGCC 2 cut(s) 5, 558
BspCNI CTCAG 1 cut(s) 262
BspDI ATCGAT 1 cut(s) 966
BspFNI CGCG 1 cut(s) 579
BspLI GGNNCC 2 cut(s) 327, 557
BspPI GGATC 1 cut(s) 128
BsrI ACTGG 2 cut(s) 166, 712
BssECI CCNNGG 2 cut(s) 336, 446
BssMI GATC 5 cut(s) 120, 460, 664, 814, 963
BssNI GRCGYC 1 cut(s) 440
BssSI CACGAG 1 cut(s) 656
BssT1I CCWWGG 1 cut(s) 336
Bst2BI CACGAG 1 cut(s) 656
Bst2UI CCWGG 1 cut(s) 447
BstACI GRCGYC 1 cut(s) 440
BstDEI CTNAG 2 cut(s) 270, 405
BstENI CCTNNNNNAGG 1 cut(s) 917
BstF5I GGATG 3 cut(s) 86, 472, 667
BstFNI CGCG 1 cut(s) 579
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 5 cut(s) 123, 463, 667, 817, 966
BstMAI GTCTC 3 cut(s) 447, 1024, 1088
BstMBI GATC 5 cut(s) 120, 460, 664, 814, 963
BstMWI GCNNNNNNNGC 1 cut(s) 895
BstNI CCWGG 1 cut(s) 447
BstSCI CCNGG 1 cut(s) 445
BstUI CGCG 1 cut(s) 579
BstV1I GCAGC 2 cut(s) 257, 1059
BstXI CCANNNNNNTGG 1 cut(s) 566
Bsu15I ATCGAT 1 cut(s) 966
BsuI GTATCC 1 cut(s) 230
BsuRI GGCC 2 cut(s) 5, 558
BsuTUI ATCGAT 1 cut(s) 966
BtgZI GCGATG 1 cut(s) 273
BtsCI GGATG 3 cut(s) 86, 472, 667
CfoI GCGC 1 cut(s) 250
Cfr13I GGNCC 2 cut(s) 556, 733
ClaI ATCGAT 1 cut(s) 966
CseI GACGC 1 cut(s) 429
DdeI CTNAG 2 cut(s) 270, 405
DpnI GATC 5 cut(s) 122, 462, 666, 816, 965
DpnII GATC 5 cut(s) 120, 460, 664, 814, 963
EciI GGCGGA 2 cut(s) 40, 50
Eco130I CCWWGG 1 cut(s) 336
Eco47I GGWCC 1 cut(s) 733
Eco57I CTGAAG 2 cut(s) 537, 905
EcoNI CCTNNNNNAGG 1 cut(s) 917
EcoRII CCWGG 1 cut(s) 445
EcoT14I CCWWGG 1 cut(s) 336
EcoT22I ATGCAT 1 cut(s) 397
ErhI CCWWGG 1 cut(s) 336
Esp3I CGTCTC 1 cut(s) 447
FaiI YATR 8 cut(s) 68, 132, 363, 397, 509, 529, 561, 567
FalI AAGNNNNNCTT 4 cut(s) 408, 440, 660, 692
FbaI TGATCA 1 cut(s) 664
Fnu4HI GCNGC 4 cut(s) 54, 246, 438, 1048
FokI GGATG 3 cut(s) 93, 479, 674
Fsp4HI GCNGC 4 cut(s) 54, 246, 438, 1048
FspBI CTAG 3 cut(s) 312, 545, 722
GlaI GCGC 1 cut(s) 249
GluI GCNGC 4 cut(s) 54, 246, 438, 1048
GsaI CCCAGC 1 cut(s) 258
GsuI CTGGAG 2 cut(s) 429, 948
HaeIII GGCC 2 cut(s) 5, 558
HapII CCGG 1 cut(s) 736
HgaI GACGC 1 cut(s) 429
HhaI GCGC 1 cut(s) 250
Hin1I GRCGYC 1 cut(s) 440
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HindIII AAGCTT 3 cut(s) 383, 896, 957
HinfI GANTC 6 cut(s) 138, 420, 806, 848, 932, 1081
HpaII CCGG 1 cut(s) 736
Hpy166II GTNNAC 1 cut(s) 905
Hpy188I TCNGA 4 cut(s) 137, 431, 484, 496
Hpy188III TCNNGA 8 cut(s) 142, 287, 464, 545, 656, 692, 917, 927
Hpy8I GTNNAC 1 cut(s) 905
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 8 cut(s) 83, 89, 410, 426, 512, 923, 1037, 1061
HpyCH4IV ACGT 2 cut(s) 30, 950
HpyCH4V TGCA 2 cut(s) 395, 531
HpyF10VI GCNNNNNNNGC 1 cut(s) 895
HpyF3I CTNAG 2 cut(s) 270, 405
HpySE526I ACGT 2 cut(s) 30, 950
Hsp92I GRCGYC 1 cut(s) 440
HspAI GCGC 1 cut(s) 248
Ksp22I TGATCA 1 cut(s) 664
Kzo9I GATC 5 cut(s) 120, 460, 664, 814, 963
LmnI GCTCC 2 cut(s) 593, 915
Lsp1109I GCAGC 2 cut(s) 257, 1059
LweI GCATC 4 cut(s) 500, 735, 932, 1003
MaeI CTAG 3 cut(s) 312, 545, 722
MaeII ACGT 2 cut(s) 30, 950
MaeIII GTNAC 1 cut(s) 26
MalI GATC 5 cut(s) 122, 462, 666, 816, 965
MboI GATC 5 cut(s) 120, 460, 664, 814, 963
MboII GAAGA 7 cut(s) 98, 369, 393, 621, 815, 972, 993
MluCI AATT 6 cut(s) 209, 305, 454, 498, 537, 614
MlyI GAGTC 3 cut(s) 147, 941, 1090
MmeI TCCRAC 1 cut(s) 1017
Mph1103I ATGCAT 1 cut(s) 397
MseI TTAA 3 cut(s) 321, 453, 786
MslI CAYNNNNRTG 2 cut(s) 564, 660
MspI CCGG 1 cut(s) 736
MspR9I CCNGG 1 cut(s) 447
Mva1269I GAATGC 1 cut(s) 194
MvaI CCWGG 1 cut(s) 447
MvnI CGCG 1 cut(s) 579
MwoI GCNNNNNNNGC 1 cut(s) 895
NdeII GATC 5 cut(s) 120, 460, 664, 814, 963
NlaIV GGNNCC 2 cut(s) 327, 557
NsiI ATGCAT 1 cut(s) 397
PctI GAATGC 1 cut(s) 194
PfeI GAWTC 3 cut(s) 420, 806, 848
PkrI GCNGC 4 cut(s) 55, 247, 439, 1049
PleI GAGTC 3 cut(s) 146, 940, 1089
PpsI GAGTC 3 cut(s) 146, 940, 1089
PshBI ATTAAT 1 cut(s) 453
Psp1406I AACGTT 1 cut(s) 950
Psp6I CCWGG 1 cut(s) 445
PspFI CCCAGC 1 cut(s) 254
PspGI CCWGG 1 cut(s) 445
PspN4I GGNNCC 2 cut(s) 327, 557
PspPI GGNCC 2 cut(s) 556, 733
RseI CAYNNNNRTG 2 cut(s) 564, 660
SaqAI TTAA 3 cut(s) 321, 453, 786
SatI GCNGC 4 cut(s) 54, 246, 438, 1048
Sau3AI GATC 5 cut(s) 120, 460, 664, 814, 963
Sau96I GGNCC 2 cut(s) 556, 733
SchI GAGTC 3 cut(s) 147, 941, 1090
ScrFI CCNGG 1 cut(s) 447
SfaNI GCATC 4 cut(s) 500, 735, 932, 1003
SinI GGWCC 1 cut(s) 733
SmiMI CAYNNNNRTG 2 cut(s) 564, 660
SmlI CTYRAG 2 cut(s) 285, 1027
SmoI CTYRAG 2 cut(s) 285, 1027
Sse9I AATT 6 cut(s) 209, 305, 454, 498, 537, 614
SsiI CCGC 5 cut(s) 51, 54, 61, 437, 579
SspMI CTAG 3 cut(s) 312, 545, 722
StyD4I CCNGG 1 cut(s) 445
StyI CCWWGG 1 cut(s) 336
TaiI ACGT 2 cut(s) 33, 953
TaqI TCGA 4 cut(s) 198, 213, 459, 966
TasI AATT 6 cut(s) 209, 305, 454, 498, 537, 614
TauI GCSGC 2 cut(s) 56, 440
TfiI GAWTC 3 cut(s) 420, 806, 848
Tru1I TTAA 3 cut(s) 321, 453, 786
Tru9I TTAA 3 cut(s) 321, 453, 786
TseI GCWGC 2 cut(s) 245, 1047
TspDTI ATGAA 8 cut(s) 83, 276, 617, 771, 816, 861, 966, 984
VpaK11BI GGWCC 1 cut(s) 733
VspI ATTAAT 1 cut(s) 453
XagI CCTNNNNNAGG 1 cut(s) 917
XapI RAATTY 2 cut(s) 498, 537
XbaI TCTAGA 1 cut(s) 544
XspI CTAG 3 cut(s) 312, 545, 722
Zsp2I ATGCAT 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.