FvH4_5g03190
ERF Family

PIN2 TERF1-interacting telomerase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0011435
Physical Location & Seq
Forward (+)
1900347 .. 1903617
3271 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g03190.t2

Sequence Viewer

Length: 1095 bp
ATGGCGGCACCGGAAGCCCCTGTCAACTATGTCGGTATTGCCAAAAAGTCCGCCGCCTTCCGCCTCATGAAGCAAATGGGCTGGGAAGAAGGTGAAGGGCTTGGGAAAGACAAGCAGGGGATCAAAGGCTATGTTAGAGTCAAGAACAAGCAGGACACTTCTGGTGTTGGAGTAGAGAAGCCTAACCAGTGGGCATTCGACACAACCCAATTCGATAACATCCTCAAAAGATTGAAAGTGCAAGCAGCGCAACCCGTTGTTGAGGAGAAGAAGAGTGCTGAAGTGGAGAGCGATGATGATGAATTGCCTAGTCCTGTTAAGGAACCAGTTGTCAAGGTTACTCGACCACAGGGAAGGTATAAGAGAAGAGAAAGGGGAAAGCTTGTGGATGCTTATTCTTCCAAGGATCTTGAAGGAATCCTTGTAAAAAGGGCAGCGTCTCCAGAGATAAATTATCTTGATGATGAGTCAGACAAAGACAAGGCAACTGAGATTCAAGTTATATGTCCTGAAGAAACCACATGCAAAGAGATTCCTCCAAATTGGTGGGGACATAAATATGGGTTCGTCCCTGGGGGTTTGCTTGGAGCAGAATTGAAAAGAAGGAAGTTAGAAAATTCTCAAGCGAATGAGAGAAAAATGTTTTATGAGGATGATCAAGTAAATTTATACAATCTTGTTCAGGACAAATCTACAACTGGAAAGCAAGGACTGGGCATTAAGGACCGGAAAAAGAAAGTAGCTGGTTGCTTCTTTGAGGGGAAAAAGACATCATTCGATGATAGTGATGATGAAGATTCTGCTGATCCTAGCTCTCCCATTGAAGACAAACAAGATGGCTCTTTAGAAATGGGAAGTAGCAACGAACCAAAAGTGAAGCTGAAAAAGCTTTGTAAGCAGCTTATTTGTCAGGCACCTGGAGCGTCATTAAAACTGAAAGCATTGAAAGCTTTGATTGATGAACGTTCATCTTCTGTTTTCTCCGACTTTTCTTCAAAAAGAGATGCTCTTGCTTACTTGAAAACAAAGCTGGAAGGCAGCACAAAGTTTATCGTGGAAGGGAAAAAGGTAAGTCTCAGATCAAAGGCAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000723 GO:0000775 GO:0000776 GO:0000781 GO:0000784 GO:0000819 GO:0003674 GO:0003676 GO:0003723 GO:0004857 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005819 GO:0005856 GO:0006139 GO:0006259 GO:0006278 GO:0006725 GO:0006807 GO:0006996 GO:0007004 GO:0007049 GO:0007059 GO:0007080 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010389 GO:0010521 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010639 GO:0010833 GO:0010948 GO:0010972 GO:0015630 GO:0016043 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022402 GO:0030234 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031396 GO:0031397 GO:0031399 GO:0031400 GO:0031647 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0032268 GO:0032269 GO:0032879 GO:0032880 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033365 GO:0034502 GO:0034504 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0042592 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043388 GO:0044092 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0045786 GO:0045930 GO:0045934 GO:0046483 GO:0048285 GO:0048518 GO:0048519 GO:0048523 GO:0050000 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051053 GO:0051098 GO:0051099 GO:0051101 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051246 GO:0051248 GO:0051276 GO:0051303 GO:0051310 GO:0051338 GO:0051348 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051726 GO:0051972 GO:0051974 GO:0060249 GO:0060255 GO:0060341 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070034 GO:0070198 GO:0070727 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:0098687 GO:0098772 GO:0098813 GO:0140014 GO:1900180 GO:1900182 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902570 GO:1902749 GO:1902750 GO:1903047 GO:1903320 GO:1903321 GO:1903827 GO:1903829 GO:1904356 GO:1904357 GO:1904742 GO:1904744 GO:1904749 GO:1904751 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch

Protein Analysis

365

Amino Acids

40.49

Weight (kDa)

8.85

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch PF01585 16 - 59 3.8e-15 G-patch domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011435)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63980 AT1G63980
fragaria_vesca FvH4_5g03190 FvH4_5g03190
malus_domestica MD06G1091000.v1.1 MD14G1111900.v1.1
prunus_persica Prupe.5G106500_v2.0.a1
pyrus_communis pycom06g08660 pycom14g10660
rosa_chinensis RchiOBHm_Chr7g0196591
rosa_laevigata RLG00000004004
rosa_multiflora Rmu_sc0006080.1_g000003
rosa_roxburghii Rroxscaffold_3G00259180
rosa_rugosa Rorug07G0035000 Rorug07G0035100
rosa_samantha Rh7AG159000 Rh7BG161000 Rh7CG167400 Rh7DG160200
rosa_wichuraiana Rw7G013900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 7, 913
AciI CCGC 4 cut(s) 5, 51, 54, 61
AclI AACGTT 1 cut(s) 964
AclWI GGATC 3 cut(s) 128, 414, 800
AcsI RAATTY 2 cut(s) 616, 664
AcuI CTGAAG 2 cut(s) 300, 531
AgsI TTSAA 8 cut(s) 235, 413, 497, 598, 824, 946, 996, 1021
AjnI CCWGG 2 cut(s) 571, 916
AluBI AGCT 8 cut(s) 382, 743, 813, 880, 889, 901, 950, 1030
AluI AGCT 8 cut(s) 382, 743, 813, 880, 889, 901, 950, 1030
Alw26I GTCTC 2 cut(s) 444, 1079
AlwI GGATC 3 cut(s) 128, 414, 800
ApeKI GCWGC 5 cut(s) 245, 434, 898, 1038, 1088
ApoI RAATTY 2 cut(s) 616, 664
AspLEI GCGC 1 cut(s) 250
AspS9I GGNCC 1 cut(s) 724
AsuHPI GGTGA 1 cut(s) 104
AvaII GGWCC 1 cut(s) 724
BanI GGYRCC 2 cut(s) 7, 913
BbsI GAAGAC 1 cut(s) 831
BbvI GCAGC 4 cut(s) 257, 446, 910, 1050
BccI CCATC 1 cut(s) 830
BciT130I CCWGG 2 cut(s) 573, 918
BclI TGATCA 1 cut(s) 655
BcoDI GTCTC 2 cut(s) 444, 1079
BfaI CTAG 2 cut(s) 309, 810
BisI GCNGC 7 cut(s) 6, 54, 246, 435, 899, 1039, 1089
BlsI GCNGC 7 cut(s) 7, 55, 247, 436, 900, 1040, 1090
Bme1390I CCNGG 2 cut(s) 573, 918
Bme18I GGWCC 1 cut(s) 724
BmgT120I GGNCC 1 cut(s) 724
BmiI GGNNCC 3 cut(s) 9, 324, 915
BmrFI CCNGG 2 cut(s) 573, 918
BmrI ACTGGG 1 cut(s) 722
BmsI GCATC 2 cut(s) 379, 994
BmuI ACTGGG 1 cut(s) 722
BpiI GAAGAC 1 cut(s) 831
BpmI CTGGAG 2 cut(s) 426, 939
BpuEI CTTGAG 1 cut(s) 606
BsaJI CCNNGG 3 cut(s) 402, 571, 572
BsaWI WCCGGW 2 cut(s) 10, 726
Bse1I ACTGG 4 cut(s) 187, 326, 703, 717
BseBI CCWGG 2 cut(s) 573, 918
BseDI CCNNGG 3 cut(s) 402, 571, 572
BseGI GGATG 3 cut(s) 219, 394, 658
BseMII CTCAG 2 cut(s) 480, 1090
BseNI ACTGG 4 cut(s) 187, 326, 703, 717
BseRI GAGGAG 1 cut(s) 278
BseXI GCAGC 4 cut(s) 257, 446, 910, 1050
BseYI CCCAGC 1 cut(s) 81
BshNI GGYRCC 2 cut(s) 7, 913
BsiSI CCGG 2 cut(s) 11, 727
BslFI GGGAC 2 cut(s) 554, 564
BsmAI GTCTC 2 cut(s) 444, 1079
BsmBI CGTCTC 1 cut(s) 444
BsmFI GGGAC 2 cut(s) 554, 564
BsmI GAATGC 1 cut(s) 194
Bsp143I GATC 5 cut(s) 120, 406, 655, 805, 1079
BspACI CCGC 4 cut(s) 5, 51, 54, 61
BspCNI CTCAG 2 cut(s) 481, 1089
BspHI TCATGA 1 cut(s) 66
BspLI GGNNCC 3 cut(s) 9, 324, 915
BspPI GGATC 3 cut(s) 128, 414, 800
BspT107I GGYRCC 2 cut(s) 7, 913
BsrI ACTGG 4 cut(s) 187, 326, 703, 717
BssECI CCNNGG 3 cut(s) 402, 571, 572
BssMI GATC 5 cut(s) 120, 406, 655, 805, 1079
BssT1I CCWWGG 1 cut(s) 402
Bst2UI CCWGG 2 cut(s) 573, 918
Bst6I CTCTTC 2 cut(s) 266, 361
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 2 cut(s) 489, 1076
BstF5I GGATG 3 cut(s) 219, 394, 658
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 5 cut(s) 123, 409, 658, 808, 1082
BstMAI GTCTC 2 cut(s) 444, 1079
BstMBI GATC 5 cut(s) 120, 406, 655, 805, 1079
BstMWI GCNNNNNNNGC 6 cut(s) 14, 247, 886, 895, 920, 947
BstNI CCWGG 2 cut(s) 573, 918
BstNSI RCATGY 1 cut(s) 525
BstSCI CCNGG 2 cut(s) 571, 916
BstV1I GCAGC 4 cut(s) 257, 446, 910, 1050
BstV2I GAAGAC 1 cut(s) 831
BstX2I RGATCY 1 cut(s) 406
BstXI CCANNNNNNTGG 1 cut(s) 546
BstYI RGATCY 1 cut(s) 406
BtgZI GCGATG 1 cut(s) 306
BtsCI GGATG 3 cut(s) 219, 394, 658
BtsIMutI CAGTG 1 cut(s) 194
Cac8I GCNNGC 1 cut(s) 243
CciI TCATGA 1 cut(s) 66
CfoI GCGC 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 724
CseI GACGC 2 cut(s) 426, 912
CviAII CATG 3 cut(s) 67, 522, 1092
DdeI CTNAG 2 cut(s) 489, 1076
DpnI GATC 5 cut(s) 122, 408, 657, 807, 1081
DpnII GATC 5 cut(s) 120, 406, 655, 805, 1079
Eam1104I CTCTTC 2 cut(s) 266, 361
EarI CTCTTC 2 cut(s) 266, 361
EciI GGCGGA 2 cut(s) 40, 50
Eco130I CCWWGG 1 cut(s) 402
Eco47I GGWCC 1 cut(s) 724
Eco57I CTGAAG 2 cut(s) 300, 531
EcoRII CCWGG 2 cut(s) 571, 916
EcoT14I CCWWGG 1 cut(s) 402
ErhI CCWWGG 1 cut(s) 402
Esp3I CGTCTC 1 cut(s) 444
FaeI CATG 3 cut(s) 70, 525, 1095
FalI AAGNNNNNCTT 2 cut(s) 405, 437
FaqI GGGAC 2 cut(s) 554, 564
FatI CATG 3 cut(s) 66, 521, 1091
FbaI TGATCA 1 cut(s) 655
Fnu4HI GCNGC 7 cut(s) 6, 54, 246, 435, 899, 1039, 1089
FokI GGATG 3 cut(s) 206, 401, 665
Fsp4HI GCNGC 7 cut(s) 6, 54, 246, 435, 899, 1039, 1089
FspBI CTAG 2 cut(s) 309, 810
GlaI GCGC 1 cut(s) 249
GluI GCNGC 7 cut(s) 6, 54, 246, 435, 899, 1039, 1089
GsaI CCCAGC 1 cut(s) 85
GsuI CTGGAG 2 cut(s) 426, 939
HapII CCGG 2 cut(s) 11, 727
HgaI GACGC 2 cut(s) 426, 912
HhaI GCGC 1 cut(s) 250
Hin1II CATG 3 cut(s) 70, 525, 1095
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HindIII AAGCTT 3 cut(s) 380, 887, 948
HinfI GANTC 6 cut(s) 138, 417, 467, 493, 532, 797
HpaII CCGG 2 cut(s) 11, 727
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 3 cut(s) 472, 985, 1079
Hpy188III TCNNGA 7 cut(s) 67, 142, 410, 443, 458, 509, 683
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 8 cut(s) 67, 83, 89, 348, 407, 597, 1028, 1052
HpyCH4IV ACGT 1 cut(s) 964
HpyCH4V TGCA 2 cut(s) 241, 525
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 247, 886, 895, 920, 947
HpyF3I CTNAG 2 cut(s) 489, 1076
HpySE526I ACGT 1 cut(s) 964
Hsp92II CATG 3 cut(s) 70, 525, 1095
HspAI GCGC 1 cut(s) 248
Ksp22I TGATCA 1 cut(s) 655
Kzo9I GATC 5 cut(s) 120, 406, 655, 805, 1079
LmnI GCTCC 2 cut(s) 587, 920
Lsp1109I GCAGC 4 cut(s) 257, 446, 910, 1050
LweI GCATC 2 cut(s) 379, 994
MaeI CTAG 2 cut(s) 309, 810
MaeII ACGT 1 cut(s) 964
MaeIII GTNAC 1 cut(s) 337
MalI GATC 5 cut(s) 122, 408, 657, 807, 1081
MboI GATC 5 cut(s) 120, 406, 655, 805, 1079
MflI RGATCY 1 cut(s) 406
MluCI AATT 7 cut(s) 209, 302, 451, 541, 593, 616, 664
MlyI GAGTC 2 cut(s) 147, 476
MmeI TCCRAC 2 cut(s) 148, 1008
MnlI CCTC 6 cut(s) 74, 233, 256, 546, 643, 751
MseI TTAA 3 cut(s) 318, 720, 929
MslI CAYNNNNRTG 1 cut(s) 558
MspI CCGG 2 cut(s) 11, 727
MspR9I CCNGG 2 cut(s) 573, 918
Mva1269I GAATGC 1 cut(s) 194
MvaI CCWGG 2 cut(s) 573, 918
MwoI GCNNNNNNNGC 6 cut(s) 14, 247, 886, 895, 920, 947
NdeII GATC 5 cut(s) 120, 406, 655, 805, 1079
NlaIII CATG 3 cut(s) 70, 525, 1095
NlaIV GGNNCC 3 cut(s) 9, 324, 915
NspI RCATGY 1 cut(s) 525
PagI TCATGA 1 cut(s) 66
PasI CCCWGGG 1 cut(s) 572
PctI GAATGC 1 cut(s) 194
PfeI GAWTC 4 cut(s) 417, 493, 532, 797
PkrI GCNGC 7 cut(s) 7, 55, 247, 436, 900, 1040, 1090
PleI GAGTC 2 cut(s) 146, 475
PpsI GAGTC 2 cut(s) 146, 475
Psp1406I AACGTT 1 cut(s) 964
Psp6I CCWGG 2 cut(s) 571, 916
PspFI CCCAGC 1 cut(s) 81
PspGI CCWGG 2 cut(s) 571, 916
PspN4I GGNNCC 3 cut(s) 9, 324, 915
PspPI GGNCC 1 cut(s) 724
PsuI RGATCY 1 cut(s) 406
RseI CAYNNNNRTG 1 cut(s) 558
SaqAI TTAA 3 cut(s) 318, 720, 929
SatI GCNGC 7 cut(s) 6, 54, 246, 435, 899, 1039, 1089
Sau3AI GATC 5 cut(s) 120, 406, 655, 805, 1079
Sau96I GGNCC 1 cut(s) 724
SchI GAGTC 2 cut(s) 147, 476
ScrFI CCNGG 2 cut(s) 573, 918
SfaNI GCATC 2 cut(s) 379, 994
SinI GGWCC 1 cut(s) 724
SmiMI CAYNNNNRTG 1 cut(s) 558
SmlI CTYRAG 1 cut(s) 621
SmoI CTYRAG 1 cut(s) 621
Sse9I AATT 7 cut(s) 209, 302, 451, 541, 593, 616, 664
SsiI CCGC 4 cut(s) 5, 51, 54, 61
SspMI CTAG 2 cut(s) 309, 810
StyD4I CCNGG 2 cut(s) 571, 916
StyI CCWWGG 1 cut(s) 402
TaiI ACGT 1 cut(s) 967
TaqI TCGA 4 cut(s) 198, 213, 343, 777
TasI AATT 7 cut(s) 209, 302, 451, 541, 593, 616, 664
TauI GCSGC 2 cut(s) 8, 56
TfiI GAWTC 4 cut(s) 417, 493, 532, 797
Tru1I TTAA 3 cut(s) 318, 720, 929
Tru9I TTAA 3 cut(s) 318, 720, 929
TscAI CASTG 1 cut(s) 194
TseI GCWGC 5 cut(s) 245, 434, 898, 1038, 1088
TspDTI ATGAA 5 cut(s) 83, 315, 807, 957, 975
TspRI CASTG 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 724
XapI RAATTY 2 cut(s) 616, 664
XceI RCATGY 1 cut(s) 525
XspI CTAG 2 cut(s) 309, 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.